]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
3 years agoUse HDF5 for testing simplex workflows 10887/head
Pasquale Africa [Thu, 3 Sep 2020 14:40:55 +0000 (14:40 +0000)]
Use HDF5 for testing simplex workflows

4 years agoMerge pull request #10937 from peterrum/pft_manifold
Daniel Arndt [Mon, 21 Sep 2020 02:39:51 +0000 (22:39 -0400)]
Merge pull request #10937 from peterrum/pft_manifold

Add note to Triangulation::create_triangulation

4 years agoMerge pull request #10930 from bangerth/code-gallery
Timo Heister [Sun, 20 Sep 2020 17:30:27 +0000 (13:30 -0400)]
Merge pull request #10930 from bangerth/code-gallery

Also install missing files from the code gallery.

4 years agoMerge pull request #10938 from masterleinad/fix_gcc-10-warnings
Timo Heister [Sun, 20 Sep 2020 17:29:38 +0000 (13:29 -0400)]
Merge pull request #10938 from masterleinad/fix_gcc-10-warnings

Fix some more gcc-10 warnings

4 years agoFix some more gcc-10 warnings 10938/head
Daniel Arndt [Sun, 20 Sep 2020 12:29:32 +0000 (08:29 -0400)]
Fix some more gcc-10 warnings

4 years agoMerge pull request #10936 from masterleinad/fix_scalapack_test_again
Peter Munch [Sun, 20 Sep 2020 08:27:24 +0000 (10:27 +0200)]
Merge pull request #10936 from masterleinad/fix_scalapack_test_again

Fix SCALAPACK tests again

4 years agoAdd note to Triangulation::create_triangulation 10937/head
Peter Munch [Sun, 20 Sep 2020 08:15:13 +0000 (10:15 +0200)]
Add note to Triangulation::create_triangulation

4 years agoFix SCALAPACK tests again 10936/head
Daniel Arndt [Sun, 20 Sep 2020 02:32:31 +0000 (22:32 -0400)]
Fix SCALAPACK tests again

4 years agoMerge pull request #10898 from bangerth/cc
David Wells [Sat, 19 Sep 2020 22:16:22 +0000 (18:16 -0400)]
Merge pull request #10898 from bangerth/cc

Mention Code Complete as a resource.

4 years agoMerge pull request #10935 from masterleinad/deprecated_parallel_triangulation
Peter Munch [Sat, 19 Sep 2020 19:33:14 +0000 (21:33 +0200)]
Merge pull request #10935 from masterleinad/deprecated_parallel_triangulation

Avoid gcc-10 warning about deprecated parallel::Triangulation

4 years agoAvoid gcc-10 warning about deprecated parallel::Triangulation 10935/head
Daniel Arndt [Sat, 19 Sep 2020 16:12:11 +0000 (12:12 -0400)]
Avoid gcc-10 warning about deprecated parallel::Triangulation

4 years agoExclude cmake-generated files. 10930/head
Wolfgang Bangerth [Fri, 18 Sep 2020 21:27:00 +0000 (15:27 -0600)]
Exclude cmake-generated files.

4 years agoMerge pull request #10308 from lethe-cfd/particle_advection_step
David Wells [Fri, 18 Sep 2020 16:07:32 +0000 (12:07 -0400)]
Merge pull request #10308 from lethe-cfd/particle_advection_step

Step-68 : Particle tracking of a massless tracer in a vortical flow

4 years agoFinalized step-68 10308/head
Bruno [Fri, 18 Sep 2020 11:37:08 +0000 (07:37 -0400)]
Finalized step-68
Fixed a bug related to deal.II distributed vector and to the particle
loop in interpolated euler.

4 years agoMerge pull request #10933 from elauksap/doc_muparser_fix
Peter Munch [Fri, 18 Sep 2020 13:34:59 +0000 (15:34 +0200)]
Merge pull request #10933 from elauksap/doc_muparser_fix

Fix broken link to muParser website

4 years agoFix broken link to muParser website 10933/head
Pasquale Africa [Fri, 18 Sep 2020 13:23:15 +0000 (13:23 +0000)]
Fix broken link to muParser website

4 years agoMerge pull request #10931 from peterrum/feeval_functions
Martin Kronbichler [Fri, 18 Sep 2020 12:36:52 +0000 (14:36 +0200)]
Merge pull request #10931 from peterrum/feeval_functions

Add some functions to FEEvaluation

4 years agoAdd some functions to FEEvaluation 10931/head
Peter Munch [Thu, 17 Sep 2020 20:00:14 +0000 (22:00 +0200)]
Add some functions to FEEvaluation

4 years agoAdd a changelog entry.
Wolfgang Bangerth [Thu, 17 Sep 2020 19:04:10 +0000 (13:04 -0600)]
Add a changelog entry.

4 years agoAlso install missing files from the code gallery.
Wolfgang Bangerth [Thu, 17 Sep 2020 19:03:04 +0000 (13:03 -0600)]
Also install missing files from the code gallery.

4 years agoMerge pull request #10929 from bangerth/period
David Wells [Thu, 17 Sep 2020 18:58:24 +0000 (14:58 -0400)]
Merge pull request #10929 from bangerth/period

Use proper grammar.

4 years agoUse proper grammar. 10929/head
Wolfgang Bangerth [Thu, 17 Sep 2020 18:42:15 +0000 (12:42 -0600)]
Use proper grammar.

4 years agoMerge pull request #10301 from bangerth/66
Peter Munch [Thu, 17 Sep 2020 18:26:58 +0000 (20:26 +0200)]
Merge pull request #10301 from bangerth/66

step-19: A simple particles tutorial.

4 years agoMerge pull request #10923 from bangerth/1
David Wells [Thu, 17 Sep 2020 13:27:18 +0000 (09:27 -0400)]
Merge pull request #10923 from bangerth/1

Make the tolerance in step-1 relative.

4 years agoMerge pull request #10925 from bangerth/1.2
David Wells [Thu, 17 Sep 2020 13:26:00 +0000 (09:26 -0400)]
Merge pull request #10925 from bangerth/1.2

Better link to what one can do with iterators.

4 years agoMerge pull request #10922 from kronbichler/refactor_fe_eval_impl
Peter Munch [Thu, 17 Sep 2020 12:49:09 +0000 (14:49 +0200)]
Merge pull request #10922 from kronbichler/refactor_fe_eval_impl

Refactor access to FEEvaluationImpl and friends

4 years agoAdjust return parameter. Add inverse mass matrix 10922/head
Martin Kronbichler [Thu, 17 Sep 2020 10:59:57 +0000 (12:59 +0200)]
Adjust return parameter. Add inverse mass matrix

4 years agoAdd a reference to step-68.
Wolfgang Bangerth [Wed, 16 Sep 2020 15:45:27 +0000 (09:45 -0600)]
Add a reference to step-68.

Make whitespace more uniform.

Edit euler_step_interpolated() somewhat.

Leave a note about step-68.

Edit the remainder of the program.

Apply suggestions from code review by bangerth

Co-authored-by: Wolfgang Bangerth <bangerth@colostate.edu>
Applied the final round of comments from Wolfgang

4 years agoBetter link to what one can do with iterators. 10925/head
Wolfgang Bangerth [Wed, 16 Sep 2020 18:58:24 +0000 (12:58 -0600)]
Better link to what one can do with iterators.

4 years agoMerge pull request #10924 from bangerth/1.1
Daniel Arndt [Wed, 16 Sep 2020 18:54:01 +0000 (14:54 -0400)]
Merge pull request #10924 from bangerth/1.1

Better explain something in step-1.

4 years agoMake the tolerance in step-1 relative. 10923/head
Wolfgang Bangerth [Wed, 16 Sep 2020 17:41:19 +0000 (11:41 -0600)]
Make the tolerance in step-1 relative.

4 years agoBetter explain something in step-1. 10924/head
Wolfgang Bangerth [Wed, 16 Sep 2020 17:41:56 +0000 (11:41 -0600)]
Better explain something in step-1.

4 years agoRefactor access to FEEvaluationImpl and friends
Martin Kronbichler [Wed, 16 Sep 2020 14:17:28 +0000 (16:17 +0200)]
Refactor access to FEEvaluationImpl and friends

4 years agoMerge pull request #10920 from kronbichler/integrate_scatter_bug
Peter Munch [Wed, 16 Sep 2020 14:08:46 +0000 (16:08 +0200)]
Merge pull request #10920 from kronbichler/integrate_scatter_bug

Fix multiple-component bug in FEFaceEvaluationImpl::integrate_scatter

4 years agoAdded the particles in "advanced techniques"
Bruno Blais [Tue, 15 Sep 2020 19:41:27 +0000 (15:41 -0400)]
Added the particles in "advanced techniques"
Added that the tutorial for the particles build on step-40
which I think is the first complete parallel tutorial.
Added changelog entry in major changes
Fixed additional spelling mistake
Apply suggestions from code review by bangerth
Applied all additional suggestions by Wolfgang Bangerth
- Fixed spelling mistakes
- Added an animation for the Rayleigh-Kothe vortex in the introduction
to illustrate the flow pattern

Co-authored-by: Wolfgang Bangerth <bangerth@colostate.edu>
4 years agoFix multiple-component bug in FEFaceEvaluationImpl::integrate_scatter 10920/head
Martin Kronbichler [Wed, 16 Sep 2020 07:20:15 +0000 (09:20 +0200)]
Fix multiple-component bug in FEFaceEvaluationImpl::integrate_scatter

4 years agoMerge pull request #10911 from masterleinad/fix_scalapack_test
Martin Kronbichler [Wed, 16 Sep 2020 08:11:08 +0000 (10:11 +0200)]
Merge pull request #10911 from masterleinad/fix_scalapack_test

Fix SCALAPACK tests

4 years agoMerge pull request #10912 from bangerth/noexcept
Martin Kronbichler [Wed, 16 Sep 2020 08:10:23 +0000 (10:10 +0200)]
Merge pull request #10912 from bangerth/noexcept

Mark two functions 'noexcept'.

4 years agoMerge pull request #10703 from bangerth/7
Daniel Arndt [Wed, 16 Sep 2020 02:34:37 +0000 (22:34 -0400)]
Merge pull request #10703 from bangerth/7

Discuss the concept of superconvergence better.

4 years agoMerge pull request #10919 from bangerth/follow-up
Daniel Arndt [Wed, 16 Sep 2020 02:30:06 +0000 (22:30 -0400)]
Merge pull request #10919 from bangerth/follow-up

Minor doc fixes.

4 years agoUse markdown. 10898/head
Wolfgang Bangerth [Thu, 10 Sep 2020 00:26:56 +0000 (18:26 -0600)]
Use markdown.

4 years agoAlso mention step-19. 10301/head
Wolfgang Bangerth [Tue, 15 Sep 2020 23:32:50 +0000 (17:32 -0600)]
Also mention step-19.

4 years agoMinor doc fixes. 10919/head
Wolfgang Bangerth [Tue, 15 Sep 2020 23:26:23 +0000 (17:26 -0600)]
Minor doc fixes.

4 years agoAdd a changelog entry.
Wolfgang Bangerth [Tue, 15 Sep 2020 23:22:33 +0000 (17:22 -0600)]
Add a changelog entry.

4 years agoMark two functions 'noexcept'. 10912/head
Wolfgang Bangerth [Mon, 14 Sep 2020 12:58:56 +0000 (06:58 -0600)]
Mark two functions 'noexcept'.

4 years agoDiscuss the concept of superconvergence better. 10703/head
Wolfgang Bangerth [Mon, 13 Jul 2020 19:03:01 +0000 (13:03 -0600)]
Discuss the concept of superconvergence better.

4 years agoAddress Bruno Blais's comments.
Wolfgang Bangerth [Tue, 15 Sep 2020 23:08:25 +0000 (17:08 -0600)]
Address Bruno Blais's comments.

4 years agoMerge pull request #10918 from tjhei/step_3_double_rhs
Wolfgang Bangerth [Tue, 15 Sep 2020 22:41:03 +0000 (16:41 -0600)]
Merge pull request #10918 from tjhei/step_3_double_rhs

step-3: use a double for the RHS

4 years agoFixed a few last spelling mistakes and syntax errors
Bruno [Thu, 16 Jul 2020 04:48:46 +0000 (00:48 -0400)]
Fixed a few last spelling mistakes and syntax errors

4 years agoUpdate examples/step-68/doc/results.dox
Bruno Blais [Thu, 16 Jul 2020 03:46:07 +0000 (23:46 -0400)]
Update examples/step-68/doc/results.dox

Co-authored-by: Rene Gassmoeller <rene.gassmoeller@mailbox.org>
4 years agoUpdate examples/step-68/doc/results.dox
Bruno Blais [Thu, 16 Jul 2020 03:45:42 +0000 (23:45 -0400)]
Update examples/step-68/doc/results.dox

Co-authored-by: Rene Gassmoeller <rene.gassmoeller@mailbox.org>
4 years agoApplied Rene suggestion to introduction
Bruno [Thu, 16 Jul 2020 03:47:36 +0000 (23:47 -0400)]
Applied Rene suggestion to introduction
- Fixed typos and minor elements

4 years agoAdd paragraphs about communication, load balancing
Rene Gassmoeller [Fri, 12 Jun 2020 17:11:16 +0000 (10:11 -0700)]
Add paragraphs about communication, load balancing

4 years ago- Added missing parameter file
Bruno [Wed, 10 Jun 2020 04:18:16 +0000 (00:18 -0400)]
- Added missing parameter file
- Added section in introduction on the challenges related to distributed particle simulations

4 years agoApplied Rene suggestions
Bruno [Wed, 10 Jun 2020 00:39:36 +0000 (20:39 -0400)]
Applied Rene suggestions

4 years agoRemoved reference to step-19 for the moment to prevent CI error
blaisb [Tue, 2 Jun 2020 20:13:50 +0000 (16:13 -0400)]
Removed reference to step-19 for the moment to prevent CI error

4 years ago- Removed dependency on trilinos or petsc to use deal.II distributed vectors
blaisb [Tue, 2 Jun 2020 17:39:08 +0000 (13:39 -0400)]
- Removed dependency on trilinos or petsc to use deal.II distributed vectors
- Finalized step-68

4 years agoAdded properties to the particles
blaisb [Tue, 2 Jun 2020 15:28:47 +0000 (11:28 -0400)]
Added properties to the particles
Shifted the particle creation to be at the gauss point to ensure that the same number of
particles is generated no matter the number of processors
There is still a bug with parallel output it seems, I will open
an issue

4 years agoChange particle generation
blaisb [Tue, 2 Jun 2020 13:11:02 +0000 (09:11 -0400)]
Change particle generation

4 years agoWorking example with properties
blaisb [Fri, 29 May 2020 18:59:03 +0000 (14:59 -0400)]
Working example with properties

4 years agoTemporary working version while I fix properties
blaisb [Fri, 29 May 2020 14:33:53 +0000 (10:33 -0400)]
Temporary working version while I fix properties

4 years agoApplied all comments on documentation
blaisb [Fri, 29 May 2020 12:29:04 +0000 (08:29 -0400)]
Applied all comments on documentation

4 years agoUpdate examples/step-68/doc/tooltip
Bruno Blais [Fri, 29 May 2020 11:50:03 +0000 (07:50 -0400)]
Update examples/step-68/doc/tooltip

Co-authored-by: Rene Gassmoeller <rene.gassmoeller@mailbox.org>
4 years agoUpdate examples/step-68/doc/results.dox
Bruno Blais [Fri, 29 May 2020 11:49:56 +0000 (07:49 -0400)]
Update examples/step-68/doc/results.dox

Co-authored-by: Rene Gassmoeller <rene.gassmoeller@mailbox.org>
4 years agoUpdate examples/step-68/doc/results.dox
Bruno Blais [Fri, 29 May 2020 11:49:39 +0000 (07:49 -0400)]
Update examples/step-68/doc/results.dox

Co-authored-by: Rene Gassmoeller <rene.gassmoeller@mailbox.org>
4 years agoUpdate examples/step-68/doc/results.dox
Bruno Blais [Fri, 29 May 2020 11:49:21 +0000 (07:49 -0400)]
Update examples/step-68/doc/results.dox

Co-authored-by: Peter Munch <peterrmuench@gmail.com>
4 years agoUpdate examples/step-68/doc/results.dox
Bruno Blais [Fri, 29 May 2020 11:49:14 +0000 (07:49 -0400)]
Update examples/step-68/doc/results.dox

Co-authored-by: Peter Munch <peterrmuench@gmail.com>
4 years agoUpdate examples/step-68/doc/results.dox
Bruno Blais [Fri, 29 May 2020 11:49:06 +0000 (07:49 -0400)]
Update examples/step-68/doc/results.dox

Co-authored-by: Peter Munch <peterrmuench@gmail.com>
4 years agoUpdate examples/step-68/step-68.cc
Bruno Blais [Fri, 29 May 2020 11:48:48 +0000 (07:48 -0400)]
Update examples/step-68/step-68.cc

Co-authored-by: Peter Munch <peterrmuench@gmail.com>
4 years agoUpdate examples/step-68/step-68.cc
Bruno Blais [Fri, 29 May 2020 11:48:24 +0000 (07:48 -0400)]
Update examples/step-68/step-68.cc

Co-authored-by: Peter Munch <peterrmuench@gmail.com>
4 years agoUpdate examples/step-68/doc/intro.dox
Bruno Blais [Fri, 29 May 2020 11:48:15 +0000 (07:48 -0400)]
Update examples/step-68/doc/intro.dox

Co-authored-by: Peter Munch <peterrmuench@gmail.com>
4 years agoUpdate examples/step-68/doc/intro.dox
Bruno Blais [Fri, 29 May 2020 11:48:00 +0000 (07:48 -0400)]
Update examples/step-68/doc/intro.dox

Co-authored-by: Peter Munch <peterrmuench@gmail.com>
4 years agoUpdate examples/step-68/doc/intro.dox
Bruno Blais [Fri, 29 May 2020 11:47:50 +0000 (07:47 -0400)]
Update examples/step-68/doc/intro.dox

Co-authored-by: Peter Munch <peterrmuench@gmail.com>
4 years agoUpdate examples/step-68/doc/intro.dox
Bruno Blais [Fri, 29 May 2020 11:47:42 +0000 (07:47 -0400)]
Update examples/step-68/doc/intro.dox

Co-authored-by: Peter Munch <peterrmuench@gmail.com>
4 years agoAddress some comments
Rene Gassmoeller [Thu, 28 May 2020 21:22:43 +0000 (14:22 -0700)]
Address some comments

4 years agoExtend documentation
Rene Gassmoeller [Thu, 28 May 2020 21:02:33 +0000 (14:02 -0700)]
Extend documentation

4 years agoAdded the documentation for step-58
blaisb [Thu, 28 May 2020 04:02:35 +0000 (00:02 -0400)]
Added the documentation for step-58
- Added introduction
- Commented to code fully
- Added results section
- Put animations on youtube

TODO :
- 2 places where additions by Rene would be appreciated
- Add particle properties and output them

4 years agoMake indent
Rene Gassmoeller [Fri, 22 May 2020 17:13:16 +0000 (10:13 -0700)]
Make indent

4 years agoAdd load balancing.
Rene Gassmoeller [Fri, 22 May 2020 17:11:17 +0000 (10:11 -0700)]
Add load balancing.

4 years agoAddresses the first comments of Peter
blaisb [Fri, 22 May 2020 16:51:22 +0000 (12:51 -0400)]
Addresses the first comments of Peter

4 years agoAdded a preliminary version of step-x for particle tracking on analytically defined...
blaisb [Fri, 22 May 2020 05:24:54 +0000 (01:24 -0400)]
Added a preliminary version of step-x for particle tracking on analytically defined velocity field

4 years agoMerge pull request #10885 from agrayver/python_cell_wrapper
Daniel Arndt [Tue, 15 Sep 2020 19:00:19 +0000 (15:00 -0400)]
Merge pull request #10885 from agrayver/python_cell_wrapper

4 years agostep-3: use a double for the RHS 10918/head
Timo Heister [Tue, 15 Sep 2020 15:34:05 +0000 (11:34 -0400)]
step-3: use a double for the RHS

4 years agoMerge pull request #10856 from Rombur/cuda_cmake_18
Daniel Arndt [Tue, 15 Sep 2020 15:33:55 +0000 (11:33 -0400)]
Merge pull request #10856 from Rombur/cuda_cmake_18

Fix warnings when using cmake 3.18

4 years agoMerge pull request #10875 from agrayver/python_wrappers
Bruno Turcksin [Tue, 15 Sep 2020 15:31:57 +0000 (11:31 -0400)]
Merge pull request #10875 from agrayver/python_wrappers

4 years agoAdd method for returning all triangulation cells 10885/head
Alexander Grayver [Thu, 3 Sep 2020 14:06:41 +0000 (16:06 +0200)]
Add method for returning all triangulation cells

4 years agoAdd an incompatibility note and optional args
Alexander Grayver [Thu, 3 Sep 2020 07:45:30 +0000 (09:45 +0200)]
Add an incompatibility note and optional args

4 years agoUpdate tutotial program
Alexander Grayver [Wed, 2 Sep 2020 07:20:33 +0000 (09:20 +0200)]
Update tutotial program

4 years agoAdd changelog item
Alexander Grayver [Tue, 1 Sep 2020 20:26:38 +0000 (22:26 +0200)]
Add changelog item

4 years agoAdd python wrappers
Alexander Grayver [Tue, 1 Sep 2020 20:22:23 +0000 (22:22 +0200)]
Add python wrappers

4 years agoAdd an incompatibility note and optional args 10875/head
Alexander Grayver [Thu, 3 Sep 2020 07:45:30 +0000 (09:45 +0200)]
Add an incompatibility note and optional args

4 years agoUpdate tutotial program
Alexander Grayver [Wed, 2 Sep 2020 07:20:33 +0000 (09:20 +0200)]
Update tutotial program

4 years agoAdd changelog item
Alexander Grayver [Tue, 1 Sep 2020 20:26:38 +0000 (22:26 +0200)]
Add changelog item

4 years agoAdd python wrappers
Alexander Grayver [Tue, 1 Sep 2020 20:22:23 +0000 (22:22 +0200)]
Add python wrappers

4 years agoMerge pull request #10858 from gassmoeller/add_copy_from_particle_handler
Timo Heister [Mon, 14 Sep 2020 16:55:05 +0000 (12:55 -0400)]
Merge pull request #10858 from gassmoeller/add_copy_from_particle_handler

Add copy from particle handler

4 years agoMerge pull request #10913 from tjhei/doc_sparsity_it
Daniel Arndt [Mon, 14 Sep 2020 16:12:23 +0000 (12:12 -0400)]
Merge pull request #10913 from tjhei/doc_sparsity_it

SparsityPattern: improve documentation

4 years agoSparsityPattern: improve documentation 10913/head
Timo Heister [Mon, 14 Sep 2020 13:53:31 +0000 (09:53 -0400)]
SparsityPattern: improve documentation

My students rightfully complained, that it is very difficult to find
begin() (hidden in the base class) and the accessor functions (hidden
behind using).

4 years agofix_scalapack tests 10911/head
Daniel Arndt [Mon, 14 Sep 2020 00:09:49 +0000 (20:09 -0400)]
fix_scalapack tests

4 years agoMerge pull request #10910 from peterrum/categorize_by_boundary_ids_pbc
Martin Kronbichler [Mon, 14 Sep 2020 07:01:40 +0000 (09:01 +0200)]
Merge pull request #10910 from peterrum/categorize_by_boundary_ids_pbc

Fix categorize_by_boundary_ids for PBC

4 years agoFix categorize_by_boundary_ids for PBC 10910/head
Peter Munch [Sun, 13 Sep 2020 09:43:45 +0000 (11:43 +0200)]
Fix categorize_by_boundary_ids for PBC


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