]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
3 years agoCMake: FindKOKKOS: Work around configuration failure 12044/head
Matthias Maier [Thu, 15 Apr 2021 04:48:56 +0000 (23:48 -0500)]
CMake: FindKOKKOS: Work around configuration failure

Configuration did fail in the following situation
 - Kokkos installed via Trilinos (MPI enabled)
 - deal.II configured without MPI

In this situation FindTRILINOS.cmake bails out because of an MPI
configuration mismatch, so the manual search for Kokkos in
FindKOKKOS.cmake is triggered. The latter one fails because Kokkos
installed via Trilinos did export a valid project configuration only
containing the Kokkos::kokkos target and not the Kokkos::kokkoscore
target.

Work around this issue by only configuring if Kokkos::kokkoscore has
indeed been imported.

3 years agoMerge pull request #12041 from marcfehling/cell-weights-empty
Bruno Turcksin [Wed, 14 Apr 2021 02:10:47 +0000 (22:10 -0400)]
Merge pull request #12041 from marcfehling/cell-weights-empty

Bug in weighting_callback for uninitialized DoFHandlers.

3 years agoMerge pull request #12040 from peterrum/process_dof_indices_fix_set_periodicity_const...
Bruno Turcksin [Wed, 14 Apr 2021 02:07:43 +0000 (22:07 -0400)]
Merge pull request #12040 from peterrum/process_dof_indices_fix_set_periodicity_constraints

Fix process_dof_indices (for artificial faces in DoFTools::set_periodicity_constraints)

3 years agoBug in weighting_callback for uninitialized DoFHandlers. 12041/head
Marc Fehling [Tue, 13 Apr 2021 21:38:59 +0000 (15:38 -0600)]
Bug in weighting_callback for uninitialized DoFHandlers.

3 years agoFix process_dof_indices (for artificial faces in DoFTools::set_periodicity_constraints) 12040/head
Peter Munch [Tue, 13 Apr 2021 19:58:57 +0000 (21:58 +0200)]
Fix process_dof_indices (for artificial faces in DoFTools::set_periodicity_constraints)

3 years agoMerge pull request #12038 from bangerth/61
David Wells [Tue, 13 Apr 2021 14:56:13 +0000 (10:56 -0400)]
Merge pull request #12038 from bangerth/61

Clarify an issue in the introduction of step-61.

3 years agoMerge pull request #12032 from peterrum/dof_handler_artificial_dofs
David Wells [Tue, 13 Apr 2021 14:43:36 +0000 (10:43 -0400)]
Merge pull request #12032 from peterrum/dof_handler_artificial_dofs

Do not allocate memory for DoFs on artificial cells

3 years agoClarify an issue in the introduction of step-61. 12038/head
Wolfgang Bangerth [Mon, 12 Apr 2021 17:24:33 +0000 (11:24 -0600)]
Clarify an issue in the introduction of step-61.

3 years agoDo not allocate memory for DoFs on artificial cells 12032/head
Peter Munch [Fri, 9 Apr 2021 15:24:19 +0000 (17:24 +0200)]
Do not allocate memory for DoFs on artificial cells

3 years agoMerge pull request #12036 from bangerth/uniformity
Timo Heister [Sat, 10 Apr 2021 17:14:19 +0000 (13:14 -0400)]
Merge pull request #12036 from bangerth/uniformity

Make tooltips more uniform in style.

3 years agoMerge pull request #12033 from peterrum/find_vector_in_mf
Martin Kronbichler [Sat, 10 Apr 2021 13:49:55 +0000 (15:49 +0200)]
Merge pull request #12033 from peterrum/find_vector_in_mf

Compare pointers in find_vector_in_mf

3 years agoMake tooltips more uniform in style. 12036/head
Wolfgang Bangerth [Fri, 9 Apr 2021 22:13:58 +0000 (16:13 -0600)]
Make tooltips more uniform in style.

3 years agoCompare pointers in find_vector_in_mf 12033/head
Peter Munch [Fri, 9 Apr 2021 19:45:51 +0000 (21:45 +0200)]
Compare pointers in find_vector_in_mf

3 years agoMerge pull request #12028 from bangerth/cmake-2
Bruno Turcksin [Fri, 9 Apr 2021 02:54:39 +0000 (22:54 -0400)]
Merge pull request #12028 from bangerth/cmake-2

Make cmake messages easier to read.

3 years agoMake cmake error messages easier to read. 12028/head
Wolfgang Bangerth [Thu, 8 Apr 2021 17:41:21 +0000 (11:41 -0600)]
Make cmake error messages easier to read.

3 years agoMerge pull request #12020 from bangerth/p2
Marc Fehling [Wed, 7 Apr 2021 05:23:58 +0000 (07:23 +0200)]
Merge pull request #12020 from bangerth/p2

Fix a typo.

3 years agoMerge pull request #12019 from bangerth/15-5
Bruno Turcksin [Wed, 7 Apr 2021 02:16:51 +0000 (22:16 -0400)]
Merge pull request #12019 from bangerth/15-5

Break generation of graphical data into its own function in step-15.

3 years agoMerge pull request #12021 from bangerth/p1
Bruno Turcksin [Wed, 7 Apr 2021 02:14:49 +0000 (22:14 -0400)]
Merge pull request #12021 from bangerth/p1

3 years agoAvoid unnecessary include files. 12021/head
Wolfgang Bangerth [Tue, 6 Apr 2021 21:47:09 +0000 (15:47 -0600)]
Avoid unnecessary include files.

3 years agoAdd missing include files.
Wolfgang Bangerth [Tue, 6 Apr 2021 21:46:45 +0000 (15:46 -0600)]
Add missing include files.

3 years agoFix a typo. 12020/head
Wolfgang Bangerth [Tue, 6 Apr 2021 21:47:34 +0000 (15:47 -0600)]
Fix a typo.

3 years agoBreak generation of graphical data into its own function in step-15. 12019/head
Wolfgang Bangerth [Wed, 31 Mar 2021 15:56:25 +0000 (09:56 -0600)]
Break generation of graphical data into its own function in step-15.

3 years agoMerge pull request #11869 from dangars/hdf5_bool
David Wells [Tue, 6 Apr 2021 18:44:31 +0000 (14:44 -0400)]
Merge pull request #11869 from dangars/hdf5_bool

Add bool type to HDF5

3 years agoMerge pull request #12018 from bangerth/table-3
Daniel Arndt [Tue, 6 Apr 2021 17:55:34 +0000 (13:55 -0400)]
Merge pull request #12018 from bangerth/table-3

3 years agoRename more local variables. Add to the documentation. 12018/head
Wolfgang Bangerth [Mon, 5 Apr 2021 22:32:38 +0000 (16:32 -0600)]
Rename more local variables. Add to the documentation.

3 years agoSlightly simplify the AlignedVector::reserve() function.
Wolfgang Bangerth [Mon, 5 Apr 2021 21:28:38 +0000 (15:28 -0600)]
Slightly simplify the AlignedVector::reserve() function.

3 years agoRename variables in AlignedVector::reserve().
Wolfgang Bangerth [Mon, 5 Apr 2021 21:26:59 +0000 (15:26 -0600)]
Rename variables in AlignedVector::reserve().

3 years agoSimplify the logic of AlignedVector::reserve().
Wolfgang Bangerth [Mon, 5 Apr 2021 21:24:50 +0000 (15:24 -0600)]
Simplify the logic of AlignedVector::reserve().

3 years agoMerge pull request #12017 from bangerth/table-2
Daniel Arndt [Tue, 6 Apr 2021 00:31:47 +0000 (20:31 -0400)]
Merge pull request #12017 from bangerth/table-2

Rename member variables.

3 years agoRename member variables. 12017/head
Wolfgang Bangerth [Mon, 5 Apr 2021 17:14:22 +0000 (11:14 -0600)]
Rename member variables.

3 years agoMerge pull request #12009 from bangerth/table
David Wells [Mon, 5 Apr 2021 19:11:57 +0000 (15:11 -0400)]
Merge pull request #12009 from bangerth/table

Use std::unique_ptr to manage memory in AlignedVector.

3 years agoMerge pull request #11965 from peterrum/compute_nonzero_components_assert
Daniel Arndt [Mon, 5 Apr 2021 18:32:47 +0000 (14:32 -0400)]
Merge pull request #11965 from peterrum/compute_nonzero_components_assert

FETools::Compositing::compute_nonzero_components(): add assert

3 years agoMerge pull request #12010 from tjhei/fewer_prepare_refine_calls
Marc Fehling [Mon, 5 Apr 2021 17:49:12 +0000 (19:49 +0200)]
Merge pull request #12010 from tjhei/fewer_prepare_refine_calls

p::d:Triangulation: fewer prepare_coarsening_and_refinement calls

3 years agoMerge pull request #11995 from bangerth/p2
Daniel Arndt [Mon, 5 Apr 2021 17:45:07 +0000 (13:45 -0400)]
Merge pull request #11995 from bangerth/p2

3 years agoAdd a test. 12009/head
Wolfgang Bangerth [Mon, 5 Apr 2021 17:19:26 +0000 (11:19 -0600)]
Add a test.

3 years agoUse std::unique_ptr to manage memory in AlignedVector.
Wolfgang Bangerth [Fri, 2 Apr 2021 21:21:33 +0000 (15:21 -0600)]
Use std::unique_ptr to manage memory in AlignedVector.

3 years agoSimplify step-15 with the new function. 11995/head
Wolfgang Bangerth [Wed, 31 Mar 2021 03:32:39 +0000 (21:32 -0600)]
Simplify step-15 with the new function.

3 years agoSimplify step-11 somewhat.
Wolfgang Bangerth [Wed, 31 Mar 2021 03:39:03 +0000 (21:39 -0600)]
Simplify step-11 somewhat.

3 years agoAdjust tests.
Wolfgang Bangerth [Wed, 31 Mar 2021 03:30:38 +0000 (21:30 -0600)]
Adjust tests.

3 years agoAdd a changelog entry.
Wolfgang Bangerth [Wed, 31 Mar 2021 03:25:57 +0000 (21:25 -0600)]
Add a changelog entry.

3 years agoAdd a default argument.
Wolfgang Bangerth [Wed, 31 Mar 2021 14:51:09 +0000 (08:51 -0600)]
Add a default argument.

3 years agoDeprecate a DoFTools function that returns by argument, rather than directly.
Wolfgang Bangerth [Wed, 31 Mar 2021 03:25:49 +0000 (21:25 -0600)]
Deprecate a DoFTools function that returns by argument, rather than directly.

We want to move away from these kinds of functions, so deprecate it and replace it by
a function that does the right thing instead.

3 years agoAdd a changelog entry.
Wolfgang Bangerth [Wed, 31 Mar 2021 03:18:53 +0000 (21:18 -0600)]
Add a changelog entry.

3 years agoDeprecate a function in DoFTools.
Wolfgang Bangerth [Wed, 31 Mar 2021 03:18:42 +0000 (21:18 -0600)]
Deprecate a function in DoFTools.

While there also update the documentation of its replacement a bit.

3 years agoFETools::Compositing::compute_nonzero_components(): add assert 11965/head
Peter Munch [Thu, 25 Mar 2021 22:02:05 +0000 (23:02 +0100)]
FETools::Compositing::compute_nonzero_components(): add assert

3 years agoadd tests 12010/head
Timo Heister [Sun, 4 Apr 2021 15:20:20 +0000 (11:20 -0400)]
add tests

3 years agoreduce number of prepare_coarsening_and_refinement() calls
Timo Heister [Mon, 28 Sep 2020 19:14:52 +0000 (15:14 -0400)]
reduce number of prepare_coarsening_and_refinement() calls

I noticed that we call prepare_coarsening_and_refinement() many times
when using a p::d::Triangulation. Many of these are certainly
unnecessary:

1. distributed tria for mesh_reconstruction_after_repartitioning. This
is used to remove all refinement and smoothing will be called inside the
execute...() call below. No need to call our more expensive version.

2. serial execute_coarsening_and_refinement() should not call the
derived version, which in turn calls the serial version.

For the test tests/distributed_grids/refine_periodic_01:
Before: 154 sequential, 154 parallel
After: 126 sequential, 53 parallel

fixup

3 years agoMerge pull request #11990 from vachan-potluri/subdivided_hyper_cube-doc
Jean-Paul Pelteret [Sun, 4 Apr 2021 19:59:04 +0000 (21:59 +0200)]
Merge pull request #11990 from vachan-potluri/subdivided_hyper_cube-doc

Fix mistake in parameter description

3 years agoMerge pull request #12005 from bangerth/kinsol
Jean-Paul Pelteret [Sun, 4 Apr 2021 19:56:22 +0000 (21:56 +0200)]
Merge pull request #12005 from bangerth/kinsol

Some KINSOL documentation updates.

3 years agoMerge pull request #12006 from bangerth/whitespace
Jean-Paul Pelteret [Sun, 4 Apr 2021 19:42:21 +0000 (21:42 +0200)]
Merge pull request #12006 from bangerth/whitespace

Unify endlines at the end of files.

3 years agoMerge pull request #12011 from tjhei/readme-typo
Jean-Paul Pelteret [Sun, 4 Apr 2021 19:40:28 +0000 (21:40 +0200)]
Merge pull request #12011 from tjhei/readme-typo

small readme.html fixes

3 years agosmall readme.html fixes 12011/head
Timo Heister [Sun, 4 Apr 2021 16:10:27 +0000 (12:10 -0400)]
small readme.html fixes

3 years agoAdd changelog 11869/head
Daniel Garcia-Sanchez [Sun, 4 Apr 2021 10:18:55 +0000 (12:18 +0200)]
Add changelog

3 years agoAdd HDF5 documentation for datatypes
Daniel Garcia-Sanchez [Sun, 4 Apr 2021 10:14:04 +0000 (12:14 +0200)]
Add HDF5 documentation for datatypes

3 years agoWrite test hdf5_07
Daniel Garcia-Sanchez [Sat, 3 Apr 2021 19:15:01 +0000 (21:15 +0200)]
Write test hdf5_07

3 years agoMerge pull request #12004 from bangerth/15-4
David Wells [Sat, 3 Apr 2021 02:03:04 +0000 (22:03 -0400)]
Merge pull request #12004 from bangerth/15-4

Use an easier-to-read do...while loop.

3 years agoUnify endlines at the end of files. 12006/head
Wolfgang Bangerth [Fri, 2 Apr 2021 17:51:13 +0000 (11:51 -0600)]
Unify endlines at the end of files.

3 years agoMerge pull request #11999 from masterleinad/avoid_polymorphic_use_arborx_access_traits
Wolfgang Bangerth [Fri, 2 Apr 2021 17:12:53 +0000 (11:12 -0600)]
Merge pull request #11999 from masterleinad/avoid_polymorphic_use_arborx_access_traits

Avoid usage of the ArborX access traits in polymorphic contexts

3 years agoMerge pull request #12002 from tamiko/small_cleanup
Wolfgang Bangerth [Fri, 2 Apr 2021 17:12:43 +0000 (11:12 -0600)]
Merge pull request #12002 from tamiko/small_cleanup

FindARBORX: Remove library variable

3 years agoMerge pull request #12003 from lethe-cfd/cylinder_with_subdivision
Wolfgang Bangerth [Fri, 2 Apr 2021 17:12:22 +0000 (11:12 -0600)]
Merge pull request #12003 from lethe-cfd/cylinder_with_subdivision

Add a subdivided_cylinder grid generator and test

3 years agoMerge pull request #11981 from marcfehling/distributed-signal-2
Wolfgang Bangerth [Fri, 2 Apr 2021 17:09:26 +0000 (11:09 -0600)]
Merge pull request #11981 from marcfehling/distributed-signal-2

Added `p:d:TemporarilyMatchRefineFlags`.

3 years agoSome KINSOL documentation updates. 12005/head
Wolfgang Bangerth [Fri, 2 Apr 2021 16:48:26 +0000 (10:48 -0600)]
Some KINSOL documentation updates.

3 years agoAdd bool type to HDF5
Daniel Garcia-Sanchez [Fri, 2 Apr 2021 09:53:20 +0000 (11:53 +0200)]
Add bool type to HDF5

3 years agoMerge pull request #11991 from bergbauer/boomer_settings
Peter Munch [Fri, 2 Apr 2021 08:00:29 +0000 (10:00 +0200)]
Merge pull request #11991 from bergbauer/boomer_settings

Add settings to BoomerAMG

3 years agoAdd changelog entry 12003/head
Bruno [Thu, 1 Apr 2021 21:55:10 +0000 (17:55 -0400)]
Add changelog entry

3 years agoApply first round of comments
Bruno [Thu, 1 Apr 2021 21:33:28 +0000 (17:33 -0400)]
Apply first round of comments

3 years agoRegular cylinder uses subdivided_cylinder
Bruno [Thu, 1 Apr 2021 20:40:22 +0000 (16:40 -0400)]
Regular cylinder uses subdivided_cylinder

3 years agoAdd image for subdivided cylinder
Bruno [Thu, 1 Apr 2021 20:35:55 +0000 (16:35 -0400)]
Add image for subdivided cylinder

3 years agoUse an easier-to-read do...while loop. 12004/head
Wolfgang Bangerth [Wed, 31 Mar 2021 15:51:53 +0000 (09:51 -0600)]
Use an easier-to-read do...while loop.

While there, also rename a variable again.

3 years agoMerge pull request #11997 from bangerth/15-3
David Wells [Thu, 1 Apr 2021 19:43:01 +0000 (15:43 -0400)]
Merge pull request #11997 from bangerth/15-3

Rename a variable.

3 years agoMerge pull request #12000 from bangerth/15-6
David Wells [Thu, 1 Apr 2021 19:39:18 +0000 (15:39 -0400)]
Merge pull request #12000 from bangerth/15-6

Remove an unnecessary destructor in step-15

3 years agoFixed documentation
Bruno [Thu, 1 Apr 2021 19:04:40 +0000 (15:04 -0400)]
Fixed documentation

3 years agoAdded `p:d:TemporarilyMatchRefineFlags`. 11981/head
Marc Fehling [Wed, 24 Mar 2021 22:22:12 +0000 (16:22 -0600)]
Added `p:d:TemporarilyMatchRefineFlags`.

3 years agoAdd a subdivided_cylinder grid generator and test
Bruno [Thu, 1 Apr 2021 18:44:23 +0000 (14:44 -0400)]
Add a subdivided_cylinder grid generator and test

3 years agoAlso make the base class members protected and improve documentation 11999/head
Daniel Arndt [Thu, 1 Apr 2021 17:04:07 +0000 (13:04 -0400)]
Also make the base class members protected and improve documentation

3 years agoMerge pull request #11993 from agrayver/define_vtk_types
Wolfgang Bangerth [Thu, 1 Apr 2021 13:35:04 +0000 (07:35 -0600)]
Merge pull request #11993 from agrayver/define_vtk_types

Add query methods for vtk cell types in ReferenceCell

3 years agoFindARBORX: Remove library variable 12002/head
Matthias Maier [Thu, 1 Apr 2021 03:51:40 +0000 (22:51 -0500)]
FindARBORX: Remove library variable

ArborX is a header only library, so we don't need to specify an empty
string here :-)

3 years agoMerge pull request #11992 from peterrum/fesystem_delete_default_constructor
Wolfgang Bangerth [Thu, 1 Apr 2021 03:07:45 +0000 (21:07 -0600)]
Merge pull request #11992 from peterrum/fesystem_delete_default_constructor

Delete default constructor FESystem

3 years agoMerge pull request #11988 from marcfehling/fes-size
Wolfgang Bangerth [Wed, 31 Mar 2021 21:38:58 +0000 (15:38 -0600)]
Merge pull request #11988 from marcfehling/fes-size

Remove assertion from `DoFHandler::get_fe_collection()`.

3 years agoAdd query methods for vtk cell types in ReferenceCell 11993/head
Alexander Grayver [Wed, 31 Mar 2021 11:39:29 +0000 (13:39 +0200)]
Add query methods for vtk cell types in ReferenceCell

3 years agoRemove an unnecessary destructor. 12000/head
Wolfgang Bangerth [Sun, 28 Mar 2021 17:20:42 +0000 (19:20 +0200)]
Remove an unnecessary destructor.

3 years agoMerge pull request #11987 from bangerth/unify
Marc Fehling [Wed, 31 Mar 2021 19:40:22 +0000 (21:40 +0200)]
Merge pull request #11987 from bangerth/unify

Unify the spelling of a section name in the tutorial programs.

3 years agoMerge pull request #11954 from bangerth/const
Marc Fehling [Wed, 31 Mar 2021 19:17:25 +0000 (21:17 +0200)]
Merge pull request #11954 from bangerth/const

Make a variable 'const'.

3 years agoAvoid usage of the ArborX access traits in polymorphic contexts
Daniel Arndt [Wed, 31 Mar 2021 18:08:19 +0000 (14:08 -0400)]
Avoid usage of the ArborX access traits in polymorphic contexts

3 years agoMerge pull request #11994 from bangerth/p1
Daniel Arndt [Wed, 31 Mar 2021 17:28:31 +0000 (13:28 -0400)]
Merge pull request #11994 from bangerth/p1

Rename a changelog file.

3 years agoAdd settings to BoomerAMG. 11991/head
Maximilian Bergbauer [Tue, 30 Mar 2021 17:39:40 +0000 (19:39 +0200)]
Add settings to BoomerAMG.

3 years agoMerge pull request #11985 from bangerth/15-1
David Wells [Wed, 31 Mar 2021 16:45:04 +0000 (12:45 -0400)]
Merge pull request #11985 from bangerth/15-1

Minor updates to step-15.

3 years agoRename a variable. 11997/head
Wolfgang Bangerth [Sun, 28 Mar 2021 17:17:11 +0000 (19:17 +0200)]
Rename a variable.

While there, also replace a '1/' by '1./'.

3 years agoMerge pull request #11986 from bangerth/15-2
Daniel Arndt [Wed, 31 Mar 2021 14:54:16 +0000 (10:54 -0400)]
Merge pull request #11986 from bangerth/15-2

Remove unnecessary header includes.

3 years agoRename a changelog file. 11994/head
Wolfgang Bangerth [Wed, 31 Mar 2021 03:16:54 +0000 (21:16 -0600)]
Rename a changelog file.

3 years agoDelete default constructor FESystem 11992/head
Peter Munch [Wed, 31 Mar 2021 10:52:02 +0000 (12:52 +0200)]
Delete default constructor FESystem

3 years agoFix mistake in parameter description 11990/head
Vachan Potluri [Wed, 31 Mar 2021 07:33:44 +0000 (13:03 +0530)]
Fix mistake in parameter description

"repetitions" here is an integer unlike in subdivided_hyper_rectangle()

3 years agoMerge pull request #11983 from peterrum/tria_policy_load_fix
Wolfgang Bangerth [Wed, 31 Mar 2021 02:59:08 +0000 (20:59 -0600)]
Merge pull request #11983 from peterrum/tria_policy_load_fix

Reset policy during Triangulation::load()

3 years agoRemove assertion from `DoFHandler::get_fe_collection()`. 11988/head
Marc Fehling [Wed, 31 Mar 2021 02:40:48 +0000 (20:40 -0600)]
Remove assertion from `DoFHandler::get_fe_collection()`.

3 years agoMake a variable 'const'. 11954/head
Wolfgang Bangerth [Mon, 22 Mar 2021 20:45:21 +0000 (21:45 +0100)]
Make a variable 'const'.

3 years agoUnify the spelling of a section name in the tutorial programs. 11987/head
Wolfgang Bangerth [Mon, 29 Mar 2021 17:16:58 +0000 (11:16 -0600)]
Unify the spelling of a section name in the tutorial programs.

We use 'Possibilities for extensions' in about 40 existing tutorial programs. Use the
same heading in about a dozen others.

3 years agoRemove unnecessary header includes. 11986/head
Wolfgang Bangerth [Tue, 30 Mar 2021 23:34:34 +0000 (17:34 -0600)]
Remove unnecessary header includes.

3 years agoMinor updates to step-15. 11985/head
Wolfgang Bangerth [Wed, 31 Mar 2021 01:52:17 +0000 (19:52 -0600)]
Minor updates to step-15.

3 years agoMerge pull request #11969 from marcfehling/signal-post-p4est-refinement
Bruno Turcksin [Wed, 31 Mar 2021 01:16:50 +0000 (21:16 -0400)]
Merge pull request #11969 from marcfehling/signal-post-p4est-refinement

New Triangulation signal `post_p4est_refinement`.

3 years agoMerge pull request #11984 from kronbichler/avoid_quadratic_complexity
Daniel Arndt [Tue, 30 Mar 2021 19:12:06 +0000 (15:12 -0400)]
Merge pull request #11984 from kronbichler/avoid_quadratic_complexity


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