]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
3 years agoFix an indentation problem in step-77. 12471/head
Wolfgang Bangerth [Fri, 18 Jun 2021 20:56:49 +0000 (14:56 -0600)]
Fix an indentation problem in step-77.

Saw this while giving my talk this morning.

3 years agoMerge pull request #12451 from gassmoeller/update_particle_documentation
David Wells [Fri, 18 Jun 2021 12:14:11 +0000 (08:14 -0400)]
Merge pull request #12451 from gassmoeller/update_particle_documentation

Cleanup for particle handler documentation

3 years agoMerge pull request #12449 from drwells/cleanup-symmetrictensor-docs-1
Martin Kronbichler [Fri, 18 Jun 2021 07:00:36 +0000 (09:00 +0200)]
Merge pull request #12449 from drwells/cleanup-symmetrictensor-docs-1

Clean up some SymmetricTensor utility functions.

3 years agoMerge pull request #12461 from drwells/simplex-gauss-3
Martin Kronbichler [Fri, 18 Jun 2021 06:57:55 +0000 (08:57 +0200)]
Merge pull request #12461 from drwells/simplex-gauss-3

Un-hardcode a simplex quadrature rule.

3 years agoMerge pull request #12468 from drwells/alignedvector-mapping-q-generic
Martin Kronbichler [Fri, 18 Jun 2021 06:56:02 +0000 (08:56 +0200)]
Merge pull request #12468 from drwells/alignedvector-mapping-q-generic

Fix a segmentation fault in MappingQGeneric.

3 years agoClean up some SymmetricTensor utility functions. 12449/head
David Wells [Fri, 11 Jun 2021 20:09:00 +0000 (16:09 -0400)]
Clean up some SymmetricTensor utility functions.

We don't need these now that we support C++11 - we can just add default template
arguments to the functions themselves.

3 years agoUn-hardcode a simplex quadrature rule. 12461/head
David Wells [Mon, 14 Jun 2021 17:15:03 +0000 (13:15 -0400)]
Un-hardcode a simplex quadrature rule.

This is easier to check (and somewhat more accurate) if we just use the
definition.

3 years agoUse check_solver_within_range in simplex/poisson_01.cc
David Wells [Thu, 17 Jun 2021 14:40:50 +0000 (10:40 -0400)]
Use check_solver_within_range in simplex/poisson_01.cc

3 years agoUse AlignedVector in MappingQGeneric. 12468/head
David Wells [Thu, 17 Jun 2021 12:50:33 +0000 (08:50 -0400)]
Use AlignedVector in MappingQGeneric.

The last patch indicates the compiler wants to vectorize access to these arrays,
so lets align them better.

3 years agoFix a segmentation fault at high optimization levels.
David Wells [Thu, 17 Jun 2021 14:10:33 +0000 (10:10 -0400)]
Fix a segmentation fault at high optimization levels.

I don't completely understand this but accessing these pointers causes
segmentation faults. It's not due to type aliasing - converting both to 'const
auto *' does not fix the problem.

3 years agoMerge pull request #12459 from simonsticko/add_template_immersed_quadrature
Martin Kronbichler [Wed, 16 Jun 2021 18:57:45 +0000 (20:57 +0200)]
Merge pull request #12459 from simonsticko/add_template_immersed_quadrature

Add a spacedim template parameter on ImmersedSurfaceQuadrature

3 years agoAddress comments 12451/head
Rene Gassmoeller [Tue, 15 Jun 2021 13:58:22 +0000 (09:58 -0400)]
Address comments

3 years agoMerge pull request #12465 from mschreter/fix_PoisseuilleFlow_constructor
Peter Munch [Tue, 15 Jun 2021 10:48:00 +0000 (12:48 +0200)]
Merge pull request #12465 from mschreter/fix_PoisseuilleFlow_constructor

Fix declaration of PoisseuilleFlow constructor

3 years agofix declaration of PoisseuilleFlow constructor 12465/head
Magdalena Schreter [Tue, 15 Jun 2021 08:25:50 +0000 (10:25 +0200)]
fix declaration of PoisseuilleFlow constructor

3 years agoMerge pull request #12464 from bangerth/exception
Martin Kronbichler [Tue, 15 Jun 2021 07:01:42 +0000 (09:01 +0200)]
Merge pull request #12464 from bangerth/exception

Add an exception to check that an element exists.

3 years agoAdd an exception to check that an element exists. 12464/head
Wolfgang Bangerth [Mon, 14 Jun 2021 22:56:26 +0000 (16:56 -0600)]
Add an exception to check that an element exists.

3 years agoMerge pull request #12422 from gassmoeller/sort_property_pool
Wolfgang Bangerth [Mon, 14 Jun 2021 19:53:07 +0000 (13:53 -0600)]
Merge pull request #12422 from gassmoeller/sort_property_pool

Sort property pool

3 years agoMerge pull request #12460 from bangerth/vv
David Wells [Mon, 14 Jun 2021 17:44:34 +0000 (13:44 -0400)]
Merge pull request #12460 from bangerth/vv

Fix a mistake in a formula.

3 years agoFix a mistake in a formula. 12460/head
Wolfgang Bangerth [Mon, 14 Jun 2021 16:12:47 +0000 (10:12 -0600)]
Fix a mistake in a formula.

The sum symbol is a copy-paste error from higher up on that page.

3 years agoAdd a spacedim template parameter on ImmersedSurfaceQuadrature 12459/head
Simon Sticko [Mon, 14 Jun 2021 13:26:42 +0000 (15:26 +0200)]
Add a spacedim template parameter on ImmersedSurfaceQuadrature

To handle the case when we have a line integral immersed in a face, the
normals on ImmersedSurfaceQuadrature need to be vectors in spacedim.
The reason is that the conormal can not be computed without knowing the
normal to the surface. Add a spacedim template parameter and change the
normals to Tensor<1, spacedim>. Rewrite the documentation and modify
the test to a account for this.

3 years agoMerge pull request #12453 from peterrum/data_out_fix
Martin Kronbichler [Mon, 14 Jun 2021 06:54:05 +0000 (08:54 +0200)]
Merge pull request #12453 from peterrum/data_out_fix

Fix DataOut for TrilinosWrappers::MPI::Vector

3 years agoMerge pull request #12457 from peterrum/data_out_update_ghost_values_follow_up
Timo Heister [Sun, 13 Jun 2021 20:55:17 +0000 (16:55 -0400)]
Merge pull request #12457 from peterrum/data_out_update_ghost_values_follow_up

Small adjustments in DataEntry

3 years agoMerge pull request #12452 from drwells/define-tria-step-3
Marc Fehling [Sun, 13 Jun 2021 20:33:56 +0000 (14:33 -0600)]
Merge pull request #12452 from drwells/define-tria-step-3

Define \mathbb{T} in step-3.

3 years agoSmall adjustments in DataEntry 12457/head
Peter Munch [Sat, 12 Jun 2021 20:14:19 +0000 (22:14 +0200)]
Small adjustments in DataEntry

3 years agoFix DataOut for TrilinosWrappers::MPI::Vector 12453/head
Peter Munch [Sat, 12 Jun 2021 18:20:41 +0000 (20:20 +0200)]
Fix DataOut for TrilinosWrappers::MPI::Vector

3 years agoDefine \mathbb{T} in step-3. 12452/head
David Wells [Sat, 12 Jun 2021 17:27:12 +0000 (13:27 -0400)]
Define \mathbb{T} in step-3.

3 years agoMerge pull request #12438 from peterrum/data_entry_value_type
Peter Munch [Sat, 12 Jun 2021 07:30:03 +0000 (09:30 +0200)]
Merge pull request #12438 from peterrum/data_entry_value_type

Template DataEntry on value_type

3 years agoUpdate test 12422/head
Rene Gassmoeller [Fri, 11 Jun 2021 23:47:30 +0000 (19:47 -0400)]
Update test

3 years agoHide particle container from property pool
Rene Gassmoeller [Fri, 11 Jun 2021 17:21:33 +0000 (13:21 -0400)]
Hide particle container from property pool

3 years agoAdd test
Rene Gassmoeller [Fri, 11 Jun 2021 14:18:16 +0000 (10:18 -0400)]
Add test

3 years agoAddress comments
Rene Gassmoeller [Fri, 11 Jun 2021 13:58:12 +0000 (09:58 -0400)]
Address comments

3 years agoRevert "Only resort if necessary"
Rene Gassmoeller [Fri, 11 Jun 2021 12:57:01 +0000 (08:57 -0400)]
Revert "Only resort if necessary"

This reverts commit cf58b8714e3aac81770656625ab093e164573091.

3 years agoOnly resort if necessary
Rene Gassmoeller [Wed, 9 Jun 2021 16:01:27 +0000 (12:01 -0400)]
Only resort if necessary

3 years agosort property pool
Rene Gassmoeller [Wed, 9 Jun 2021 05:10:36 +0000 (01:10 -0400)]
sort property pool

3 years agoUpdate documentation. Fix missing function.
Rene Gassmoeller [Fri, 11 Jun 2021 23:08:04 +0000 (19:08 -0400)]
Update documentation. Fix missing function.

3 years agoMerge pull request #12447 from drwells/shorten-boundary-mesh-doxygen
David Wells [Fri, 11 Jun 2021 22:28:43 +0000 (18:28 -0400)]
Merge pull request #12447 from drwells/shorten-boundary-mesh-doxygen

Shorten a long type in doxygen.

3 years agoTemplate DataEntry on value_type 12438/head
Peter Munch [Fri, 11 Jun 2021 06:07:51 +0000 (08:07 +0200)]
Template DataEntry on value_type

3 years agoMerge pull request #12446 from drwells/remove-eisenstat
David Wells [Fri, 11 Jun 2021 20:06:21 +0000 (16:06 -0400)]
Merge pull request #12446 from drwells/remove-eisenstat

Remove, without deprecation, the Eisenstat preconditioner.

3 years agoShorten a long type in doxygen. 12447/head
David Wells [Fri, 11 Jun 2021 16:45:21 +0000 (12:45 -0400)]
Shorten a long type in doxygen.

3 years agoMerge pull request #12442 from bangerth/exception-2
Martin Kronbichler [Fri, 11 Jun 2021 19:30:05 +0000 (21:30 +0200)]
Merge pull request #12442 from bangerth/exception-2

Make an exception text readable.

3 years agoMerge pull request #12443 from peterrum/stokes_test_fix
Peter Munch [Fri, 11 Jun 2021 18:49:20 +0000 (20:49 +0200)]
Merge pull request #12443 from peterrum/stokes_test_fix

Fix test feinterface/stokes

3 years agoRemove, without deprecation, the Eisenstat preconditioner. 12446/head
David Wells [Fri, 11 Jun 2021 16:59:28 +0000 (12:59 -0400)]
Remove, without deprecation, the Eisenstat preconditioner.

This has never worked in parallel and has suffered from a variety of other
issues over the years.

3 years agoMerge pull request #12440 from luca-heltai/remove_internal_function
Martin Kronbichler [Fri, 11 Jun 2021 16:37:02 +0000 (18:37 +0200)]
Merge pull request #12440 from luca-heltai/remove_internal_function

Remove useless function.

3 years agoFix test feinterface/stokes 12443/head
Peter Munch [Fri, 11 Jun 2021 15:52:44 +0000 (17:52 +0200)]
Fix test feinterface/stokes

3 years agoMake an exception text readable. 12442/head
Wolfgang Bangerth [Fri, 11 Jun 2021 14:04:12 +0000 (08:04 -0600)]
Make an exception text readable.

3 years agoProvide a definition of a static variable.
Wolfgang Bangerth [Fri, 11 Jun 2021 15:15:31 +0000 (09:15 -0600)]
Provide a definition of a static variable.

3 years agoMerge pull request #12431 from drwells/iso-refine-cleanups-1
Daniel Arndt [Fri, 11 Jun 2021 14:10:35 +0000 (10:10 -0400)]
Merge pull request #12431 from drwells/iso-refine-cleanups-1

3 years agoFix some common typos 12431/head
David Wells [Fri, 11 Jun 2021 10:48:00 +0000 (06:48 -0400)]
Fix some common typos

3 years agoImprove comments.
David Wells [Wed, 9 Jun 2021 20:07:26 +0000 (16:07 -0400)]
Improve comments.

3 years agoRefer to the face type as such.
David Wells [Wed, 9 Jun 2021 20:06:37 +0000 (16:06 -0400)]
Refer to the face type as such.

3 years agoAdd a utility function for next available vertices.
David Wells [Wed, 9 Jun 2021 20:05:10 +0000 (16:05 -0400)]
Add a utility function for next available vertices.

3 years agoMerge pull request #12125 from simonsticko/quadrature_generator
Martin Kronbichler [Fri, 11 Jun 2021 09:55:10 +0000 (11:55 +0200)]
Merge pull request #12125 from simonsticko/quadrature_generator

Add class generating high-order immersed quadrature rules

3 years agoRemove useless function. 12440/head
Luca Heltai [Fri, 11 Jun 2021 09:37:51 +0000 (11:37 +0200)]
Remove useless function.

3 years agoMerge pull request #12370 from zjiaqi2018/stokes_test
Martin Kronbichler [Fri, 11 Jun 2021 05:05:03 +0000 (07:05 +0200)]
Merge pull request #12370 from zjiaqi2018/stokes_test

feinterface: stokes test

3 years agoMerge pull request #12434 from gassmoeller/ensure_particle_container_size
Martin Kronbichler [Fri, 11 Jun 2021 05:02:30 +0000 (07:02 +0200)]
Merge pull request #12434 from gassmoeller/ensure_particle_container_size

Ensure correct particle container size

3 years agoMerge pull request #12436 from bangerth/assertion
Martin Kronbichler [Fri, 11 Jun 2021 05:00:35 +0000 (07:00 +0200)]
Merge pull request #12436 from bangerth/assertion

Expand on the description of an assertion.

3 years agoMerge pull request #12433 from kronbichler/simplify_particle_accessor
Wolfgang Bangerth [Thu, 10 Jun 2021 21:30:49 +0000 (15:30 -0600)]
Merge pull request #12433 from kronbichler/simplify_particle_accessor

Simplify members of ParticleAccessor

3 years agoExpand on the description of an assertion. 12436/head
Wolfgang Bangerth [Thu, 10 Jun 2021 20:09:56 +0000 (14:09 -0600)]
Expand on the description of an assertion.

3 years agoMerge pull request #11594 from peterrum/data_out_update_ghost_values
Peter Munch [Thu, 10 Jun 2021 16:35:33 +0000 (18:35 +0200)]
Merge pull request #11594 from peterrum/data_out_update_ghost_values

DataOut: update ghost values

3 years agoAdd some reasonable asserts 12434/head
Rene Gassmoeller [Thu, 10 Jun 2021 15:21:49 +0000 (11:21 -0400)]
Add some reasonable asserts

3 years agoAdd asserts where useful
Rene Gassmoeller [Thu, 10 Jun 2021 15:14:22 +0000 (11:14 -0400)]
Add asserts where useful

3 years agoAutomatically resize particle container
Rene Gassmoeller [Thu, 10 Jun 2021 15:03:57 +0000 (11:03 -0400)]
Automatically resize particle container

3 years agoDataOut: update ghost values 11594/head
Peter Munch [Fri, 12 Mar 2021 20:41:30 +0000 (21:41 +0100)]
DataOut: update ghost values

Use new LinearAlgebra::ReadWriteVector::import

Work on block vector

3 years agoMore use cases of new iterator 12433/head
Martin Kronbichler [Thu, 10 Jun 2021 14:20:25 +0000 (16:20 +0200)]
More use cases of new iterator

3 years agoSecond try
Martin Kronbichler [Thu, 10 Jun 2021 12:20:41 +0000 (14:20 +0200)]
Second try

3 years agoMerge pull request #12428 from gassmoeller/unify_particle_creation
Martin Kronbichler [Thu, 10 Jun 2021 09:13:44 +0000 (11:13 +0200)]
Merge pull request #12428 from gassmoeller/unify_particle_creation

Unify particle creation

3 years agoMerge pull request #12432 from simonsticko/zero_dim_tensor_product_quadrature
Martin Kronbichler [Thu, 10 Jun 2021 09:13:28 +0000 (11:13 +0200)]
Merge pull request #12432 from simonsticko/zero_dim_tensor_product_quadrature

Add a single point in Quadrature<0> constructor taking Quadrature<1>

3 years agoSimplify members of ParticleAccessor
Martin Kronbichler [Thu, 10 Jun 2021 08:25:22 +0000 (10:25 +0200)]
Simplify members of ParticleAccessor

3 years agoAdd a single point in Quadrature<0> constructor taking Quadrature<1> 12432/head
Simon Sticko [Thu, 10 Jun 2021 06:09:58 +0000 (08:09 +0200)]
Add a single point in Quadrature<0> constructor taking Quadrature<1>

The constructor currently adds a single weight but no points. This
appears to be a mistake, since points and weights get different sizes.
Fix this and add an comment in the documentation.

3 years agoAdd class generating high-order immersed quadrature rules 12125/head
Simon Sticko [Mon, 3 May 2021 09:46:14 +0000 (11:46 +0200)]
Add class generating high-order immersed quadrature rules

Add a class NonMatching::QuadratureGenerator that generates high-order
immersed quadrature rules over a BoundingBox, B, when the domain is
described by a level set function, \psi. Thus creating quadrature rules
for the following 3 regions of the box:

{x \in B : \psi(x) < 0},
{x \in B : \psi(x) > 0},
{x \in B : \psi(x) = 0}.

3 years agoMerge pull request #12420 from peterrum/dataout_acc
Martin Kronbichler [Thu, 10 Jun 2021 05:09:30 +0000 (07:09 +0200)]
Merge pull request #12420 from peterrum/dataout_acc

Make method/field in DataOut accessible

3 years agoMerge pull request #12421 from kronbichler/particle_accessor_cleanup
Martin Kronbichler [Thu, 10 Jun 2021 05:08:33 +0000 (07:08 +0200)]
Merge pull request #12421 from kronbichler/particle_accessor_cleanup

Minor simplification in particle accessor

3 years agoMerge pull request #12424 from masterleinad/update_docu_trilinos
Martin Kronbichler [Thu, 10 Jun 2021 05:08:13 +0000 (07:08 +0200)]
Merge pull request #12424 from masterleinad/update_docu_trilinos

Clarify requirment for MPI with Trilinos in documentation

3 years agoMerge pull request #12426 from marcfehling/fix-p4est
David Wells [Thu, 10 Jun 2021 01:41:48 +0000 (21:41 -0400)]
Merge pull request #12426 from marcfehling/fix-p4est

Fix setup script for p4est>=2.3.

3 years agoUn-hardcode some constants.
David Wells [Wed, 9 Jun 2021 20:02:46 +0000 (16:02 -0400)]
Un-hardcode some constants.

3 years agoMerge pull request #12427 from drwells/add-AssertIsNotUsed
David Wells [Wed, 9 Jun 2021 23:53:17 +0000 (19:53 -0400)]
Merge pull request #12427 from drwells/add-AssertIsNotUsed

Add an assertion for unused tria objects.

3 years agoIndent 12428/head
Rene Gassmoeller [Wed, 9 Jun 2021 20:41:06 +0000 (16:41 -0400)]
Indent

3 years agoMake method/field in DataOut accessible 12420/head
Peter Munch [Wed, 9 Jun 2021 08:37:01 +0000 (10:37 +0200)]
Make method/field in DataOut accessible

3 years agoFix a test
Rene Gassmoeller [Wed, 9 Jun 2021 20:40:32 +0000 (16:40 -0400)]
Fix a test

3 years agoUnify particle creation
Rene Gassmoeller [Wed, 9 Jun 2021 20:28:40 +0000 (16:28 -0400)]
Unify particle creation

3 years agoAdd an assertion for unused tria objects. 12427/head
David Wells [Wed, 9 Jun 2021 19:40:27 +0000 (15:40 -0400)]
Add an assertion for unused tria objects.

3 years agoUse find instead of version check. 12426/head
Marc Fehling [Wed, 9 Jun 2021 19:30:51 +0000 (13:30 -0600)]
Use find instead of version check.

3 years agoMerge pull request #11490 from peterrum/tet_refinement
David Wells [Wed, 9 Jun 2021 19:08:19 +0000 (15:08 -0400)]
Merge pull request #11490 from peterrum/tet_refinement

Enabling global refinement for TET meshes

3 years agoFix setup script for p4est>=2.3.
Marc Fehling [Wed, 9 Jun 2021 18:32:45 +0000 (12:32 -0600)]
Fix setup script for p4est>=2.3.

3 years agoClarify requirment for MPI with Trilinos in documentation 12424/head
Daniel Arndt [Wed, 9 Jun 2021 18:48:46 +0000 (14:48 -0400)]
Clarify requirment for MPI with Trilinos in documentation

3 years agoMinor simplification in particle accessor 12421/head
Martin Kronbichler [Wed, 9 Jun 2021 13:44:33 +0000 (15:44 +0200)]
Minor simplification in particle accessor

3 years agoMerge pull request #12412 from lethe-cfd/particles_ghost_merge
Martin Kronbichler [Wed, 9 Jun 2021 18:15:54 +0000 (20:15 +0200)]
Merge pull request #12412 from lethe-cfd/particles_ghost_merge

Merge ghost and regular particles in single container

3 years agoFIx cell type that is checked 12412/head
Bruno [Wed, 9 Jun 2021 14:14:39 +0000 (10:14 -0400)]
FIx cell type that is checked

3 years agoMerge pull request #12417 from gassmoeller/reduce_use_of_particle_class
Martin Kronbichler [Wed, 9 Jun 2021 13:21:32 +0000 (15:21 +0200)]
Merge pull request #12417 from gassmoeller/reduce_use_of_particle_class

Do not use Particle class inside ParticleHandler

3 years agoMerge pull request #12414 from bangerth/vec-tools-2
David Wells [Wed, 9 Jun 2021 13:20:32 +0000 (09:20 -0400)]
Merge pull request #12414 from bangerth/vec-tools-2

Simplify some code for the DG case by referring to the continuous case.

3 years agoEnabling global refinement for TET meshes 11490/head
Peter Munch [Sat, 30 Jan 2021 16:47:26 +0000 (17:47 +0100)]
Enabling global refinement for TET meshes

3 years agoMerge pull request #12401 from kronbichler/mapping_q_cache_vertices
Peter Munch [Wed, 9 Jun 2021 08:20:33 +0000 (10:20 +0200)]
Merge pull request #12401 from kronbichler/mapping_q_cache_vertices

Fix MappingQCache::get_vertices()

3 years agoMerge pull request #12418 from bangerth/sundials
Martin Kronbichler [Wed, 9 Jun 2021 05:44:02 +0000 (07:44 +0200)]
Merge pull request #12418 from bangerth/sundials

We no longer support SUNDIALS before version 3.0.

3 years agoFix ghost duplication bug + apply Rene's comments
Bruno [Wed, 9 Jun 2021 02:19:59 +0000 (22:19 -0400)]
Fix ghost duplication bug + apply Rene's comments

3 years agoProperly treat the case of piecewise constant elements. 12414/head
Wolfgang Bangerth [Tue, 8 Jun 2021 23:29:54 +0000 (17:29 -0600)]
Properly treat the case of piecewise constant elements.

3 years agoSimplify some code for the DG case by referring to the continuous case.
Wolfgang Bangerth [Tue, 8 Jun 2021 17:01:13 +0000 (11:01 -0600)]
Simplify some code for the DG case by referring to the continuous case.

3 years agoWe no longer support SUNDIALS before version 3.0. 12418/head
Wolfgang Bangerth [Tue, 8 Jun 2021 23:25:46 +0000 (17:25 -0600)]
We no longer support SUNDIALS before version 3.0.

3 years agoRemove last non-necessary note
Bruno Blais [Tue, 8 Jun 2021 21:42:17 +0000 (17:42 -0400)]
Remove last non-necessary note

3 years agoApply Rene comments
Bruno Blais [Tue, 8 Jun 2021 17:31:00 +0000 (13:31 -0400)]
Apply Rene comments

3 years agoFix particle duplication + tests
Bruno Blais [Tue, 8 Jun 2021 17:05:21 +0000 (13:05 -0400)]
Fix particle duplication + tests


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