]>
https://gitweb.dealii.org/ - dealii.git/log
David Wells [Tue, 29 Jun 2021 14:23:23 +0000 (10:23 -0400)]
Improve the documentation of TriaAccessor::is_ghost().
The documentation isn't quite right for p::s::T. Now that we have three parallel
Triangulation classes we should be a bit more careful in describing some of
their distinctions.
David Wells [Tue, 29 Jun 2021 12:49:06 +0000 (08:49 -0400)]
Merge pull request #12517 from peterrum/tria_serialization_fix
Fix serialization of Triangulation
Peter Munch [Tue, 29 Jun 2021 08:34:30 +0000 (10:34 +0200)]
Merge pull request #12502 from peterrum/n_global_coarse_cells
Add Triangulation::n_global_coarse_cells()
Martin Kronbichler [Tue, 29 Jun 2021 07:55:20 +0000 (09:55 +0200)]
Merge pull request #12508 from peterrum/CellWeightPolicy
Introduce RepartitioningPolicyTools::CellWeightPolicy
Peter Munch [Sun, 27 Jun 2021 14:29:49 +0000 (16:29 +0200)]
Introduce RepartitioningPolicyTools::CellWeightPolicy
Martin Kronbichler [Mon, 28 Jun 2021 20:01:27 +0000 (22:01 +0200)]
Merge pull request #12504 from peterrum/CellIDTranslator
Move CellIDTranslator into a new file
Peter Munch [Mon, 28 Jun 2021 18:52:52 +0000 (20:52 +0200)]
Fix serialization of Triangulation
Peter Munch [Sat, 26 Jun 2021 15:30:16 +0000 (17:30 +0200)]
Add Triangulation::n_global_coarse_cells()
Martin Kronbichler [Mon, 28 Jun 2021 13:51:38 +0000 (15:51 +0200)]
Merge pull request #12430 from peterrum/make_consistent_in_parallel
Implement AffineConstraints::make_consistent_in_parallel()
David Wells [Mon, 28 Jun 2021 11:56:23 +0000 (07:56 -0400)]
Merge pull request #12492 from peterrum/is_ghost_on_level
Add CellAccessor::is_ghost_on_level()
Timo Heister [Mon, 28 Jun 2021 05:06:38 +0000 (01:06 -0400)]
Merge pull request #12511 from drwells/missing-umfpack-extension
Add one more missing file extension.
David Wells [Mon, 28 Jun 2021 01:17:46 +0000 (21:17 -0400)]
Add one more missing file extension.
Peter Munch [Sat, 26 Jun 2021 17:12:45 +0000 (19:12 +0200)]
Move CellIDTranslator into a new file
Martin Kronbichler [Sun, 27 Jun 2021 06:46:34 +0000 (08:46 +0200)]
Merge pull request #12506 from tjhei/umfpack_cmake_warning
fix umfpack cmake 3.20 warning
Martin Kronbichler [Sun, 27 Jun 2021 06:45:52 +0000 (08:45 +0200)]
Merge pull request #12505 from tjhei/fix_undefined_copy_to_mg
fix missing undefined copy_to_mg
Timo Heister [Sat, 26 Jun 2021 21:33:43 +0000 (17:33 -0400)]
fix umfpack cmake 3.20 warning
Fix the following warnings produced by CMake 3.20:
CMake Warning (dev) at cmake/macros/macro_deal_ii_add_library.cmake:35
(ADD_LIBRARY):
Policy CMP0115 is not set: Source file extensions must be explicit.
File:
/home/heister/deal.ii-
candi/tmp/unpack/deal.II-v9.3.0/bundled/umfpack/UMFPACK/Source/umf_dump.cc
/home/heister/deal.ii-
candi/tmp/unpack/deal.II-v9.3.0/bundled/umfpack/UMFPACK/Source/umf_init_front.cc
/home/heister/deal.ii-
candi/tmp/unpack/deal.II-v9.3.0/bundled/umfpack/UMFPACK/Source/umf_local_search.cc
/home/heister/deal.ii-
candi/tmp/unpack/deal.II-v9.3.0/bundled/umfpack/UMFPACK/Source/umfpack_report_numeric.cc
Timo Heister [Sat, 26 Jun 2021 17:38:26 +0000 (13:38 -0400)]
add missing inst
fixes #12501 and #12490
David Wells [Fri, 25 Jun 2021 20:22:02 +0000 (16:22 -0400)]
Merge pull request #12499 from peterrum/distributed_compute_point_locations_unique_mapping
Make mapping in GridTools::distributed_compute_point_locations() unique
David Wells [Fri, 25 Jun 2021 20:17:56 +0000 (16:17 -0400)]
Merge pull request #12495 from drwells/improve-p-d-T-checks
Improve some checks for distributed Triangulations.
David Wells [Fri, 25 Jun 2021 18:46:09 +0000 (14:46 -0400)]
Merge pull request #12486 from drwells/instantiate-subdomain
Instantiate a GridTools function for dim = 1.
David Wells [Thu, 24 Jun 2021 20:26:02 +0000 (16:26 -0400)]
Improve some checks for distributed Triangulations.
Peter Munch [Fri, 25 Jun 2021 16:17:44 +0000 (18:17 +0200)]
Make mapping in GridTools::distributed_compute_point_locations() unique
David Wells [Tue, 22 Jun 2021 14:41:10 +0000 (10:41 -0400)]
Instantiate a GridTools function for dim = 1.
This requires special-casing p::d::T since the internal functions aren't defined
for 1D.
David Wells [Thu, 24 Jun 2021 12:25:36 +0000 (08:25 -0400)]
Merge pull request #12491 from peterrum/get_face_quadrature_collection
Work on get_face_quadrature_collection() and get_unique_face_quadratures()
Timo Heister [Wed, 23 Jun 2021 21:42:41 +0000 (17:42 -0400)]
Merge pull request #12485 from gassmoeller/clarify_locally_owned_particles
Fix number of locally owned particles in particle handler
Peter Munch [Wed, 23 Jun 2021 21:00:44 +0000 (23:00 +0200)]
Add CellAccessor::is_ghost_on_level()
Rene Gassmoeller [Tue, 22 Jun 2021 14:31:27 +0000 (10:31 -0400)]
Clarify locally owned particles
Peter Munch [Wed, 23 Jun 2021 08:56:19 +0000 (10:56 +0200)]
Work on get_face_quadrature_collection() and get_unique_face_quadratures()
Peter Munch [Wed, 23 Jun 2021 06:08:05 +0000 (08:08 +0200)]
Merge pull request #12489 from drwells/fix-simplex-quadrature-rules
Really use n_points_1D for the simplex quadrature rules.
David Wells [Tue, 22 Jun 2021 18:04:34 +0000 (14:04 -0400)]
Fix several simplex quadrature rules.
David Wells [Tue, 22 Jun 2021 18:00:07 +0000 (14:00 -0400)]
Add a test with poor output.
This test passes on master, but shouldn't, since several of the printed
integrands are wrong. This will be corrected in the next commit.
Marc Fehling [Tue, 22 Jun 2021 17:20:06 +0000 (11:20 -0600)]
Merge pull request #12483 from gassmoeller/fix_remove_particle
Fix bug in remove particle
Matthias Maier [Tue, 22 Jun 2021 16:31:15 +0000 (11:31 -0500)]
Merge pull request #12478 from tjhei/mpi_underlinkage_bug
fix cmake underlinkage error
David Wells [Tue, 22 Jun 2021 16:29:26 +0000 (12:29 -0400)]
Merge pull request #12416 from mathsen/flux_level_constraints
changed make_flux_sparsity_pattern to have the ability to add constraints
David Wells [Tue, 22 Jun 2021 14:48:49 +0000 (10:48 -0400)]
Merge pull request #12469 from bangerth/count
Update/extend the script that counts lines of code.
Rene Gassmoeller [Tue, 22 Jun 2021 14:01:13 +0000 (10:01 -0400)]
Fix copyright year
Bruno Turcksin [Tue, 22 Jun 2021 01:20:26 +0000 (21:20 -0400)]
Merge pull request #12482 from bangerth/arkode-3
Remove code for SUNDIALS versions prior to 3.0.
Daniel Arndt [Mon, 21 Jun 2021 22:22:39 +0000 (18:22 -0400)]
Merge pull request #12480 from peterrum/MinimalGranularityPolicy_fix
Fix MinimalGranularityPolicy
Rene Gassmoeller [Mon, 21 Jun 2021 21:52:48 +0000 (17:52 -0400)]
Fix bug in remove particle
Daniel Arndt [Mon, 21 Jun 2021 18:56:48 +0000 (14:56 -0400)]
Merge pull request #12481 from bangerth/changelog
Add a missing changelog entry.
Wolfgang Bangerth [Tue, 25 May 2021 19:31:15 +0000 (13:31 -0600)]
Remove code for SUNDIALS versions prior to 3.0.
Wolfgang Bangerth [Mon, 21 Jun 2021 17:38:12 +0000 (11:38 -0600)]
Add a missing changelog entry.
Peter Munch [Mon, 21 Jun 2021 14:37:23 +0000 (16:37 +0200)]
Fix MinimalGranularityPolicy
Daniel Arndt [Sun, 20 Jun 2021 15:53:00 +0000 (11:53 -0400)]
Merge pull request #12473 from bangerth/exc-3
Simplify an exception.
Jean-Paul Pelteret [Sun, 20 Jun 2021 11:51:43 +0000 (13:51 +0200)]
Merge pull request #12479 from joseeroman/jose/fix-slepc-url
Fix SLEPc URL
Jose E. Roman [Sun, 20 Jun 2021 11:14:44 +0000 (13:14 +0200)]
Fix SLEPc URL
Timo Heister [Sat, 19 Jun 2021 18:15:38 +0000 (14:15 -0400)]
fix cmake underlinkage error
The underlinkage MPI check under Ubuntu fails if MPI_CXX_LIBRARIES is
empty, which happens if you configure with CXX=mpicxx (even though you
should not).
In this situation, just disable this hack. Errors look like this:
CMake Error at cmake/modules/FindMPI.cmake:143 (LIST):
LIST GET given empty list
Call Stack (most recent call first):
cmake/macros/macro_find_package.cmake:27 (_FIND_PACKAGE)
cmake/configure/configure_1_mpi.cmake:28 (FIND_PACKAGE)
/a/CMakeFiles/CMakeTmp/evaluate_expression.tmp:1
(FEATURE_MPI_FIND_EXTERNAL)
cmake/macros/macro_evaluate_expression.cmake:30 (INCLUDE)
cmake/macros/macro_configure_feature.cmake:237 (EVALUATE_EXPRESSION)
cmake/configure/configure_1_mpi.cmake:81 (CONFIGURE_FEATURE)
cmake/macros/macro_verbose_include.cmake:19 (INCLUDE)
CMakeLists.txt:121 (VERBOSE_INCLUDE)
CMake Error at cmake/modules/FindMPI.cmake:144 (GET_FILENAME_COMPONENT):
GET_FILENAME_COMPONENT called with incorrect number of arguments
Call Stack (most recent call first):
cmake/macros/macro_find_package.cmake:27 (_FIND_PACKAGE)
cmake/configure/configure_1_mpi.cmake:28 (FIND_PACKAGE)
/a/CMakeFiles/CMakeTmp/evaluate_expression.tmp:1
(FEATURE_MPI_FIND_EXTERNAL)
cmake/macros/macro_evaluate_expression.cmake:30 (INCLUDE)
cmake/macros/macro_configure_feature.cmake:237 (EVALUATE_EXPRESSION)
cmake/configure/configure_1_mpi.cmake:81 (CONFIGURE_FEATURE)
cmake/macros/macro_verbose_include.cmake:19 (INCLUDE)
CMakeLists.txt:121 (VERBOSE_INCLUDE)
-- _mpi_libopen_pal_library not found! The call was:
-- FIND_LIBRARY(_mpi_libopen_pal_library NAMES open-pal HINTS
NO_DEFAULT_PATH NO_CMAKE_ENVIRONMENT_PATH NO_CMAKE_PATH
NO_SYSTEM_ENVIRONMENT_PATH NO_CMAKE_SYSTEM_PATH NO_CMAKE_FIND_ROOT_PATH)
Martin Kronbichler [Sat, 19 Jun 2021 20:41:28 +0000 (22:41 +0200)]
Merge pull request #12462 from simonsticko/face_quadrature_generator
Add class generating immersed quadrature rules over a box face
Martin Kronbichler [Sat, 19 Jun 2021 20:40:58 +0000 (22:40 +0200)]
Merge pull request #12470 from bangerth/ref
Leave a reference to step-78.
Martin Kronbichler [Sat, 19 Jun 2021 20:40:20 +0000 (22:40 +0200)]
Merge pull request #12471 from bangerth/77
Fix an indentation problem in step-77.
Martin Kronbichler [Sat, 19 Jun 2021 20:39:45 +0000 (22:39 +0200)]
Merge pull request #12472 from bangerth/tutorials
Add two missing tutorial programs to the changelog.
Wolfgang Bangerth [Fri, 18 Jun 2021 21:16:35 +0000 (15:16 -0600)]
Add two missing tutorial programs to the changelog.
Wolfgang Bangerth [Fri, 18 Jun 2021 21:15:57 +0000 (15:15 -0600)]
Simplify an exception.
Wolfgang Bangerth [Fri, 18 Jun 2021 20:56:49 +0000 (14:56 -0600)]
Fix an indentation problem in step-77.
Saw this while giving my talk this morning.
Wolfgang Bangerth [Fri, 18 Jun 2021 20:56:15 +0000 (14:56 -0600)]
Leave a reference to step-78.
David Wells [Fri, 18 Jun 2021 12:14:11 +0000 (08:14 -0400)]
Merge pull request #12451 from gassmoeller/update_particle_documentation
Cleanup for particle handler documentation
Simon Sticko [Mon, 14 Jun 2021 18:26:11 +0000 (20:26 +0200)]
Add class generating immersed quadrature rules over a box face
Add a class NonMatching::FaceQuadratureGenerator, that in the same way
as QuadratureGenerator generates immersed quadrature rules, but over a
given face of a BoundingBox.
Martin Kronbichler [Fri, 18 Jun 2021 07:00:36 +0000 (09:00 +0200)]
Merge pull request #12449 from drwells/cleanup-symmetrictensor-docs-1
Clean up some SymmetricTensor utility functions.
Martin Kronbichler [Fri, 18 Jun 2021 06:57:55 +0000 (08:57 +0200)]
Merge pull request #12461 from drwells/simplex-gauss-3
Un-hardcode a simplex quadrature rule.
Martin Kronbichler [Fri, 18 Jun 2021 06:56:02 +0000 (08:56 +0200)]
Merge pull request #12468 from drwells/alignedvector-mapping-q-generic
Fix a segmentation fault in MappingQGeneric.
Wolfgang Bangerth [Fri, 18 Jun 2021 05:30:02 +0000 (23:30 -0600)]
Update/extend the script that counts lines of code.
David Wells [Fri, 11 Jun 2021 20:09:00 +0000 (16:09 -0400)]
Clean up some SymmetricTensor utility functions.
We don't need these now that we support C++11 - we can just add default template
arguments to the functions themselves.
David Wells [Mon, 14 Jun 2021 17:15:03 +0000 (13:15 -0400)]
Un-hardcode a simplex quadrature rule.
This is easier to check (and somewhat more accurate) if we just use the
definition.
David Wells [Thu, 17 Jun 2021 14:40:50 +0000 (10:40 -0400)]
Use check_solver_within_range in simplex/poisson_01.cc
David Wells [Thu, 17 Jun 2021 12:50:33 +0000 (08:50 -0400)]
Use AlignedVector in MappingQGeneric.
The last patch indicates the compiler wants to vectorize access to these arrays,
so lets align them better.
David Wells [Thu, 17 Jun 2021 14:10:33 +0000 (10:10 -0400)]
Fix a segmentation fault at high optimization levels.
I don't completely understand this but accessing these pointers causes
segmentation faults. It's not due to type aliasing - converting both to 'const
auto *' does not fix the problem.
Peter Munch [Wed, 9 Jun 2021 23:53:53 +0000 (01:53 +0200)]
Implement AffineConstraints::make_consistent_in_parallel()
Martin Kronbichler [Wed, 16 Jun 2021 18:57:45 +0000 (20:57 +0200)]
Merge pull request #12459 from simonsticko/add_template_immersed_quadrature
Add a spacedim template parameter on ImmersedSurfaceQuadrature
Rene Gassmoeller [Tue, 15 Jun 2021 13:58:22 +0000 (09:58 -0400)]
Address comments
Peter Munch [Tue, 15 Jun 2021 10:48:00 +0000 (12:48 +0200)]
Merge pull request #12465 from mschreter/fix_PoisseuilleFlow_constructor
Fix declaration of PoisseuilleFlow constructor
Magdalena Schreter [Tue, 15 Jun 2021 08:25:50 +0000 (10:25 +0200)]
fix declaration of PoisseuilleFlow constructor
Martin Kronbichler [Tue, 15 Jun 2021 07:01:42 +0000 (09:01 +0200)]
Merge pull request #12464 from bangerth/exception
Add an exception to check that an element exists.
Wolfgang Bangerth [Mon, 14 Jun 2021 22:56:26 +0000 (16:56 -0600)]
Add an exception to check that an element exists.
Wolfgang Bangerth [Mon, 14 Jun 2021 19:53:07 +0000 (13:53 -0600)]
Merge pull request #12422 from gassmoeller/sort_property_pool
Sort property pool
David Wells [Mon, 14 Jun 2021 17:44:34 +0000 (13:44 -0400)]
Merge pull request #12460 from bangerth/vv
Fix a mistake in a formula.
Wolfgang Bangerth [Mon, 14 Jun 2021 16:12:47 +0000 (10:12 -0600)]
Fix a mistake in a formula.
The sum symbol is a copy-paste error from higher up on that page.
Simon Sticko [Mon, 14 Jun 2021 13:26:42 +0000 (15:26 +0200)]
Add a spacedim template parameter on ImmersedSurfaceQuadrature
To handle the case when we have a line integral immersed in a face, the
normals on ImmersedSurfaceQuadrature need to be vectors in spacedim.
The reason is that the conormal can not be computed without knowing the
normal to the surface. Add a spacedim template parameter and change the
normals to Tensor<1, spacedim>. Rewrite the documentation and modify
the test to a account for this.
Martin Kronbichler [Mon, 14 Jun 2021 06:54:05 +0000 (08:54 +0200)]
Merge pull request #12453 from peterrum/data_out_fix
Fix DataOut for TrilinosWrappers::MPI::Vector
Timo Heister [Sun, 13 Jun 2021 20:55:17 +0000 (16:55 -0400)]
Merge pull request #12457 from peterrum/data_out_update_ghost_values_follow_up
Small adjustments in DataEntry
Marc Fehling [Sun, 13 Jun 2021 20:33:56 +0000 (14:33 -0600)]
Merge pull request #12452 from drwells/define-tria-step-3
Define \mathbb{T} in step-3.
Peter Munch [Sat, 12 Jun 2021 20:14:19 +0000 (22:14 +0200)]
Small adjustments in DataEntry
Peter Munch [Sat, 12 Jun 2021 18:20:41 +0000 (20:20 +0200)]
Fix DataOut for TrilinosWrappers::MPI::Vector
David Wells [Sat, 12 Jun 2021 17:27:12 +0000 (13:27 -0400)]
Define \mathbb{T} in step-3.
Peter Munch [Sat, 12 Jun 2021 07:30:03 +0000 (09:30 +0200)]
Merge pull request #12438 from peterrum/data_entry_value_type
Template DataEntry on value_type
Rene Gassmoeller [Fri, 11 Jun 2021 23:47:30 +0000 (19:47 -0400)]
Update test
Rene Gassmoeller [Fri, 11 Jun 2021 17:21:33 +0000 (13:21 -0400)]
Hide particle container from property pool
Rene Gassmoeller [Fri, 11 Jun 2021 14:18:16 +0000 (10:18 -0400)]
Add test
Rene Gassmoeller [Fri, 11 Jun 2021 13:58:12 +0000 (09:58 -0400)]
Address comments
Rene Gassmoeller [Fri, 11 Jun 2021 12:57:01 +0000 (08:57 -0400)]
Revert "Only resort if necessary"
This reverts commit
cf58b8714e3aac81770656625ab093e164573091 .
Rene Gassmoeller [Wed, 9 Jun 2021 16:01:27 +0000 (12:01 -0400)]
Only resort if necessary
Rene Gassmoeller [Wed, 9 Jun 2021 05:10:36 +0000 (01:10 -0400)]
sort property pool
Rene Gassmoeller [Fri, 11 Jun 2021 23:08:04 +0000 (19:08 -0400)]
Update documentation. Fix missing function.
David Wells [Fri, 11 Jun 2021 22:28:43 +0000 (18:28 -0400)]
Merge pull request #12447 from drwells/shorten-boundary-mesh-doxygen
Shorten a long type in doxygen.
Peter Munch [Fri, 11 Jun 2021 06:07:51 +0000 (08:07 +0200)]
Template DataEntry on value_type
David Wells [Fri, 11 Jun 2021 20:06:21 +0000 (16:06 -0400)]
Merge pull request #12446 from drwells/remove-eisenstat
Remove, without deprecation, the Eisenstat preconditioner.
David Wells [Fri, 11 Jun 2021 16:45:21 +0000 (12:45 -0400)]
Shorten a long type in doxygen.
Martin Kronbichler [Fri, 11 Jun 2021 19:30:05 +0000 (21:30 +0200)]
Merge pull request #12442 from bangerth/exception-2
Make an exception text readable.
Peter Munch [Fri, 11 Jun 2021 18:49:20 +0000 (20:49 +0200)]
Merge pull request #12443 from peterrum/stokes_test_fix
Fix test feinterface/stokes
David Wells [Fri, 11 Jun 2021 16:59:28 +0000 (12:59 -0400)]
Remove, without deprecation, the Eisenstat preconditioner.
This has never worked in parallel and has suffered from a variety of other
issues over the years.
Martin Kronbichler [Fri, 11 Jun 2021 16:37:02 +0000 (18:37 +0200)]
Merge pull request #12440 from luca-heltai/remove_internal_function
Remove useless function.
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