]>
https://gitweb.dealii.org/ - dealii.git/log
Sean Ingimarson [Tue, 11 Apr 2023 14:19:57 +0000 (10:19 -0400)]
Improvements to the NOXSolver documentation
David Wells [Thu, 9 Feb 2023 12:39:30 +0000 (07:39 -0500)]
Merge pull request #14778 from bangerth/types
Fix a comment for types::boundary_id.
Peter Munch [Thu, 9 Feb 2023 10:13:46 +0000 (11:13 +0100)]
Merge pull request #14766 from mschreter/find_all_active_cells_around_point_2
Extend test `find_all_active_cells_around_point_04`
Wolfgang Bangerth [Thu, 9 Feb 2023 03:46:08 +0000 (20:46 -0700)]
Fix a comment for types::boundary_id.
Wolfgang Bangerth [Thu, 9 Feb 2023 01:40:42 +0000 (18:40 -0700)]
Merge pull request #14759 from Darth-Veidim/darth-branch
changed std::pow to Utilities::pow in include/ source/
Wolfgang Bangerth [Thu, 9 Feb 2023 01:25:53 +0000 (18:25 -0700)]
Merge pull request #14736 from luca-heltai/stefanozampini/petscsf
Add support for partitioning with PetscSF
Wolfgang Bangerth [Wed, 8 Feb 2023 23:45:57 +0000 (16:45 -0700)]
Merge pull request #14760 from tjhei/diag-ignore-cast-function-type
ignore external cast-function-type warnings
Wolfgang Bangerth [Wed, 8 Feb 2023 22:57:29 +0000 (15:57 -0700)]
Merge pull request #14761 from drwells/fe-dgp-regularity
Fix the support points for FE_SimplexDGP.
Wolfgang Bangerth [Wed, 8 Feb 2023 20:56:53 +0000 (13:56 -0700)]
Merge pull request #14762 from drwells/qprojector-orientation
QProjector: minor orientation fixes.
Vadim Gallyamov [Wed, 8 Feb 2023 20:48:33 +0000 (21:48 +0100)]
changed std::pow to Utilities::fixed_power in include/ source/
Timo Heister [Wed, 8 Feb 2023 11:51:57 +0000 (06:51 -0500)]
Merge pull request #14767 from bangerth/cleanups
Minor cleanups in PETSc interfaces.
Daniel Arndt [Wed, 8 Feb 2023 02:55:49 +0000 (21:55 -0500)]
Merge pull request #14765 from pengfej/fixing_random_number_generator
Wolfgang Bangerth [Wed, 8 Feb 2023 00:30:12 +0000 (17:30 -0700)]
Minor cleanups in PETSc interfaces.
Specifically, silence a warning about an unused variable. While there,
mark a couple more variables as 'const'.
Magdalena Schreter [Tue, 7 Feb 2023 19:25:34 +0000 (20:25 +0100)]
extend find_all_active_cells_around_point_04.cc
Pengfei Jia [Tue, 7 Feb 2023 18:50:32 +0000 (13:50 -0500)]
Update source/base/mu_parser_internal.cc
Co-authored-by: Timo Heister <timo.heister@gmail.com>
Pengfei Jia [Tue, 7 Feb 2023 18:26:29 +0000 (13:26 -0500)]
indent
Pengfei Jia [Tue, 7 Feb 2023 18:25:32 +0000 (13:25 -0500)]
Adding tests and fixing comments
Pengfei Jia [Tue, 7 Feb 2023 17:17:31 +0000 (12:17 -0500)]
Fixing random number generator function parser
Daniel Arndt [Tue, 7 Feb 2023 13:35:57 +0000 (08:35 -0500)]
Merge pull request #14728 from peterrum/find_all_active_cells_around_point
Peter Munch [Wed, 25 Jan 2023 22:17:53 +0000 (23:17 +0100)]
Fix find_all_active_cells_around_point()
Co-authored-by: Magdalena Schreter <schreter.magdalena@gmail.com>
Marc Fehling [Tue, 7 Feb 2023 07:41:50 +0000 (00:41 -0700)]
Merge pull request #14763 from Rombur/static_tests
Don't use static variables in tests
Bruno Turcksin [Tue, 7 Feb 2023 02:40:44 +0000 (21:40 -0500)]
Don't use static variables in tests
David Wells [Tue, 7 Feb 2023 02:04:05 +0000 (21:04 -0500)]
QProjector: minor orientation fixes.
David Wells [Tue, 7 Feb 2023 02:02:59 +0000 (21:02 -0500)]
Fix the support points for FE_SimplexDGP.
Timo Heister [Tue, 7 Feb 2023 00:19:11 +0000 (19:19 -0500)]
ignore external cast-function-type warnings
When building on Ubuntu 22.04 (gcc 11.3) with OpenMPI I am getting the
following warnings:
```
[ 58%] Building CXX object
source/base/CMakeFiles/obj_base_release.dir/symbolic_function.cc.o
In file included from
/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277,
from
/usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:2887,
from
/home/runner/dealii-candi/tmp/build/deal.II-master/include/deal.II/base/config.h:576,
from
/home/runner/dealii-candi/tmp/unpack/deal.II-master/include/deal.II/base/symbolic_function.templates.h:19,
from
/home/runner/dealii-candi/tmp/unpack/deal.II-master/source/base/symbolic_function.cc:16:
/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:
In member function ‘virtual void MPI::Op::Init(void (*)(const void*,
void*, int, const MPI::Datatype&), bool)’:
/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:25:
warning: cast between incompatible function types from ‘void (*)(void*,
void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*,
ompi_datatype_t**))’ to ‘void (*)(void*, void*, int*,
ompi_datatype_t**)’ [-Wcast-function-type]
121 | (void)MPI_Op_create((MPI_User_function*)
```
The code in question doesn't look correct, but we are not using the c++
wrappers anyways.
Marc Fehling [Mon, 6 Feb 2023 18:32:46 +0000 (11:32 -0700)]
Merge pull request #14756 from dealii/dependabot/github_actions/docker/build-push-action-4
Bump docker/build-push-action from 3 to 4
dependabot[bot] [Mon, 6 Feb 2023 02:24:41 +0000 (02:24 +0000)]
Bump docker/build-push-action from 3 to 4
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 3 to 4.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](https://github.com/docker/build-push-action/compare/v3...v4)
---
updated-dependencies:
- dependency-name: docker/build-push-action
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Timo Heister [Sun, 5 Feb 2023 22:21:28 +0000 (17:21 -0500)]
Merge pull request #14755 from Rombur/kokko_mpi
Add Kokkos::initialize and finalize to MPI_InitFinalize
Bruno Turcksin [Fri, 3 Feb 2023 15:03:54 +0000 (10:03 -0500)]
Add Kokkos::initalize and finalize to MPI_InitFinalize
Bruno Turcksin [Fri, 3 Feb 2023 14:58:55 +0000 (09:58 -0500)]
Remove Kokkos::initialize and finalize
Matthias Maier [Fri, 3 Feb 2023 16:03:25 +0000 (16:03 +0000)]
Merge pull request #14753 from masterleinad/kokkos_clean_up
Avoid __CUDA_ARCH__ in source code
Daniel Arndt [Thu, 2 Feb 2023 20:57:44 +0000 (15:57 -0500)]
Wrap Kokkos::abort
Daniel Arndt [Thu, 2 Feb 2023 15:50:39 +0000 (15:50 +0000)]
Fix nvcc
Daniel Arndt [Thu, 2 Feb 2023 13:16:39 +0000 (08:16 -0500)]
ifdef KOKKOS_VERSION -> if KOKKOS_VERSION
Marc Fehling [Thu, 2 Feb 2023 06:44:47 +0000 (23:44 -0700)]
Merge pull request #14752 from simonsticko/fix_missing_kokkos_header
Make sure all Kokkos headers are installed
Daniel Arndt [Thu, 2 Feb 2023 03:32:32 +0000 (22:32 -0500)]
Disable warnings in Kokkos headers
Daniel Arndt [Wed, 1 Feb 2023 22:02:19 +0000 (17:02 -0500)]
Avoid __CUDA_ARCH__ in source code
Simon Sticko [Wed, 1 Feb 2023 18:30:24 +0000 (19:30 +0100)]
Make sure all Kokkos headers are installed
One of the Kokkos headers has a .h extension and not .hpp as the
others. Add *.h to the the pattern of headers we copy over when we
install the library.
Daniel Arndt [Wed, 1 Feb 2023 14:39:42 +0000 (09:39 -0500)]
Merge pull request #14726 from tamiko/silence_warnings
Daniel Arndt [Wed, 1 Feb 2023 14:38:07 +0000 (09:38 -0500)]
Merge pull request #14746 from bangerth/thread
Daniel Arndt [Wed, 1 Feb 2023 14:37:18 +0000 (09:37 -0500)]
Merge pull request #14744 from singima/kinsol_edits
Sean Ingimarson [Fri, 27 Jan 2023 17:45:20 +0000 (12:45 -0500)]
Some edits of the KINSol documentation.
David Wells [Tue, 31 Jan 2023 13:31:22 +0000 (08:31 -0500)]
Merge pull request #14747 from marcfehling/doc-setactivefe
Doc: Inform user how to exchange active FE indices on ghost cells.
Marc Fehling [Tue, 31 Jan 2023 05:54:50 +0000 (22:54 -0700)]
Doc: Inform user how to exchange active FE indices on ghost cells.
Wolfgang Bangerth [Tue, 31 Jan 2023 02:00:36 +0000 (19:00 -0700)]
Merge pull request #14745 from drwells/exodus-lines
Make the ExodusII reader work with line types.
David Wells [Mon, 30 Jan 2023 20:25:23 +0000 (15:25 -0500)]
Merge pull request #14740 from bangerth/doc-12
Better document CommunicationPatternBase and derived classes.
Wolfgang Bangerth [Mon, 30 Jan 2023 19:51:22 +0000 (12:51 -0700)]
Remove a BOOST src directory we don't use.
David Wells [Fri, 27 Jan 2023 22:28:09 +0000 (17:28 -0500)]
Make ExodusII work with line types.
This is useful for loading codim 1 and codim 2 meshes.
Stefano Zampini [Tue, 24 Jan 2023 08:46:38 +0000 (11:46 +0300)]
Add support for CommunicationPattern with PETSc SF
Stefano Zampini [Tue, 24 Jan 2023 12:26:08 +0000 (15:26 +0300)]
Convenience routine from IndexSet to PETSc IS
David Wells [Fri, 27 Jan 2023 22:29:04 +0000 (17:29 -0500)]
Merge pull request #14741 from bangerth/index-set
Introduce IndexSet::get_index_vector().
Wolfgang Bangerth [Fri, 27 Jan 2023 20:15:37 +0000 (13:15 -0700)]
Replace deprecated function in tests.
Wolfgang Bangerth [Fri, 27 Jan 2023 20:11:50 +0000 (13:11 -0700)]
Deprecate a fill function.
Daniel Arndt [Fri, 27 Jan 2023 18:34:46 +0000 (13:34 -0500)]
Merge pull request #14737 from drwells/default-orientation
David Wells [Fri, 27 Jan 2023 14:10:53 +0000 (09:10 -0500)]
Merge pull request #14731 from tamiko/fix_tests_3
Test cgal/cgal_intersect_simplices_1d_3d: constrain to version 5.5 or newer
Bruno Turcksin [Fri, 27 Jan 2023 13:46:34 +0000 (08:46 -0500)]
Merge pull request #14571 from masterleinad/kokkos_la_d_vector_device_aware_mpi
David Wells [Fri, 27 Jan 2023 12:42:11 +0000 (07:42 -0500)]
Merge pull request #14743 from tamiko/cmake_improvements_2
Documentation: update to reflect recent CMake changes
David Wells [Fri, 27 Jan 2023 12:34:31 +0000 (07:34 -0500)]
Merge pull request #14742 from tamiko/cmake_improvements
CMake: Uniformly raise the minimum required version to 3.13.4
David Wells [Fri, 27 Jan 2023 12:32:42 +0000 (07:32 -0500)]
Merge pull request #14738 from tamiko/make_older_cmake_happy
CMake: do not use VERSION for interface targets for older CMake versions
Marc Fehling [Fri, 27 Jan 2023 05:40:34 +0000 (22:40 -0700)]
Merge pull request #14739 from masterleinad/strip_x_cuda
Strip "-x cuda" from Trilinos flags without configured Cuda support
Matthias Maier [Fri, 27 Jan 2023 01:12:19 +0000 (19:12 -0600)]
doc/users: update to new cmake syntax, update to recent changes
Matthias Maier [Fri, 27 Jan 2023 01:03:22 +0000 (19:03 -0600)]
doc/developers: update to new cmake syntax, update to recent changes
Matthias Maier [Fri, 27 Jan 2023 00:51:19 +0000 (18:51 -0600)]
update news entry
Matthias Maier [Fri, 27 Jan 2023 00:41:42 +0000 (18:41 -0600)]
examples/step-81: depend on deal.II 9.5.0
Matthias Maier [Fri, 27 Jan 2023 00:40:52 +0000 (18:40 -0600)]
CMake: Uniformly raise the minimum required version to 3.13.4
Wolfgang Bangerth [Fri, 27 Jan 2023 00:18:52 +0000 (17:18 -0700)]
Merge pull request #14735 from luca-heltai/stefanozampini/issue-14656
partially address https://github.com/dealii/dealii/issues/14656
Matthias Maier [Thu, 26 Jan 2023 15:07:35 +0000 (09:07 -0600)]
CMake: do use VERSION for interface targets for older CMake versions
Wolfgang Bangerth [Thu, 26 Jan 2023 23:14:25 +0000 (16:14 -0700)]
Use get_index_vector() instead of fill_index_vector().
Daniel Arndt [Thu, 26 Jan 2023 22:25:13 +0000 (17:25 -0500)]
Strip "-x cuda" from Trilinos flags without configured Cuda support
Wolfgang Bangerth [Thu, 26 Jan 2023 23:08:16 +0000 (16:08 -0700)]
Add a changelog entry.
Wolfgang Bangerth [Thu, 26 Jan 2023 23:07:09 +0000 (16:07 -0700)]
Introduce IndexSet::get_index_vector().
Wolfgang Bangerth [Thu, 26 Jan 2023 22:45:20 +0000 (15:45 -0700)]
Better document CommunicationPatternBase and derived classes.
David Wells [Thu, 26 Jan 2023 03:32:44 +0000 (22:32 -0500)]
Add some comments describing our orientation implementation.
David Wells [Sat, 21 Jan 2023 22:40:29 +0000 (17:40 -0500)]
Consistently name things 'combined face orientation'.
David Wells [Sat, 21 Jan 2023 18:16:40 +0000 (13:16 -0500)]
Un-hardcode some more face and line orientations.
Wolfgang Bangerth [Thu, 26 Jan 2023 20:58:11 +0000 (13:58 -0700)]
Merge pull request #14685 from luca-heltai/stefanozampini/petsc-precon
PETScWrappers: improve preconditioner class
Wolfgang Bangerth [Thu, 26 Jan 2023 20:54:53 +0000 (13:54 -0700)]
Merge pull request #14732 from drwells/unhardcode-fe-p-orientation
Un-hardcode some orientation info in FE_SimplexP{_Bubbles}.
Wolfgang Bangerth [Thu, 26 Jan 2023 20:45:44 +0000 (13:45 -0700)]
Merge pull request #14713 from tamiko/parallelize_tests
CMake: add_test(): allow concurrent runs of tests with shared targets
David Wells [Thu, 26 Jan 2023 14:53:41 +0000 (09:53 -0500)]
Merge pull request #14729 from tamiko/fix_tests_1
Test gmsh/gmsh_api_(01|02|03|04): add output variants
Daniel Arndt [Thu, 26 Jan 2023 14:27:08 +0000 (09:27 -0500)]
Use DEAL_II_CONSTEXPR_IN_CONDITIONAL
Daniel Arndt [Thu, 26 Jan 2023 14:05:35 +0000 (09:05 -0500)]
Merge remote-tracking branch 'upstream/master' into kokkos_la_d_vector_device_aware_mpi
Daniel Arndt [Thu, 26 Jan 2023 13:22:40 +0000 (08:22 -0500)]
Merge pull request #14733 from masterleinad/fix_old_kokkos_tests
Stefano Zampini [Tue, 17 Jan 2023 14:41:22 +0000 (17:41 +0300)]
fix mispells
Stefano Zampini [Mon, 16 Jan 2023 14:19:01 +0000 (17:19 +0300)]
Improve documentation
Stefano Zampini [Mon, 16 Jan 2023 13:27:34 +0000 (16:27 +0300)]
rename assign_petsc_matrix/vector to reinit
Daniel Arndt [Thu, 26 Jan 2023 04:12:36 +0000 (23:12 -0500)]
Fix a couple tests for older Kokkos versions used by Trilinos
David Wells [Thu, 26 Jan 2023 02:44:21 +0000 (21:44 -0500)]
Un-hardcode some orientation info in FE_SimplexP{_Bubbles}.
Matthias Maier [Thu, 26 Jan 2023 01:53:59 +0000 (19:53 -0600)]
Test cgal/cgal_intersect_simplices_1d_3d: constrain to version 5.5 or newer
The test fails with the following assertion:
--------------------------------------------------------
An error occurred in line <557> of file <source/cgal/intersections.cc> in function [...]
The violated condition was:
false
Additional information:
This function requires a version of CGAL greater or equal than 5.5.
--------------------------------------------------------
So, let's simply not run this particular test in this case.
Daniel Arndt [Thu, 26 Jan 2023 01:15:58 +0000 (20:15 -0500)]
Merge pull request #14508 from tamiko/modernize_cmake_part_11
Matthias Maier [Thu, 26 Jan 2023 01:04:39 +0000 (19:04 -0600)]
Test gmsh/gmsh_api_(01|02|03|04): add output variants
It seems that there was a change in more recent versions of gmsh and the
mesh output changed. These output variants seem to be stable among a
number of architectures and linux distributions so I simply commit them.
The output is similar to the main version and seems to be a "superset".
(It looks like older gmsh versions removed unused points ?!)
If we ever start to increase the number of output variants again I
suggest to change the test to ".run_only" and not compare unstable
output.
Matthias Maier [Thu, 26 Jan 2023 00:08:16 +0000 (00:08 +0000)]
Merge pull request #14701 from bangerth/explicit
Also mark some variable instantiations as 'extern'.
Matthias Maier [Thu, 26 Jan 2023 00:04:51 +0000 (00:04 +0000)]
Merge pull request #14722 from masterleinad/introduce_deal_ii_if_constexpr
Introduce DEAL_II_IF_CONSTEXPR
Matthias Maier [Wed, 25 Jan 2023 23:59:57 +0000 (23:59 +0000)]
Merge pull request #14719 from drwells/more-initlog
Use initlog() in more tests.
Wolfgang Bangerth [Wed, 25 Jan 2023 23:52:25 +0000 (16:52 -0700)]
Merge pull request #14702 from drwells/set-combined-orientation
Set combined orientation
Matthias Maier [Tue, 24 Jan 2023 17:00:25 +0000 (11:00 -0600)]
CMake: add_tests(): do not oversubscribe mpi/thread tests
Matthias Maier [Tue, 24 Jan 2023 16:56:35 +0000 (10:56 -0600)]
CMake: add_test() remove code duplication
Matthias Maier [Tue, 24 Jan 2023 03:06:55 +0000 (21:06 -0600)]
CMake: add_test(): remove compilation interrupt guard
Matthias Maier [Tue, 24 Jan 2023 02:40:58 +0000 (20:40 -0600)]
CMake: add_test(): allow concurrent runs of tests with shared targets
In order to make this possible we define an *additional* test (and test
target) that depends on the executable target and ensures that the
target is in place before it is called concurrently.
Matthias Maier [Tue, 24 Jan 2023 02:07:28 +0000 (20:07 -0600)]
CMake: add_test(): refactor, add comments, fix error message
Matthias Maier [Tue, 24 Jan 2023 01:56:46 +0000 (19:56 -0600)]
CMake: add_test(): refactor shared target boolean
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