]> https://gitweb.dealii.org/ - candi.git/log
candi.git
4 years agofix trilinos tpetra when using intel MKL 150/head
Timo Heister [Tue, 23 Jun 2020 18:05:02 +0000 (14:05 -0400)]
fix trilinos tpetra when using intel MKL

The choice to disable TPetra when using MKL lead to several downstream
Trilinos configuration errors. Instead, just disable the two
instantiations that are missing in MKL. Tested to work correctly with
Intel 19.0.5 and MKL.

4 years agoMerge pull request #146 from rezarastak/deprecate_old_ubuntu
Timo Heister [Tue, 9 Jun 2020 22:15:04 +0000 (18:15 -0400)]
Merge pull request #146 from rezarastak/deprecate_old_ubuntu

deprecate unsupported ubuntu platforms

4 years agoMerge pull request #147 from rezarastak/required_ubuntu_packages
Timo Heister [Tue, 9 Jun 2020 22:14:38 +0000 (18:14 -0400)]
Merge pull request #147 from rezarastak/required_ubuntu_packages

bc and python must be available on ubuntu

4 years agobc and python must be available on ubuntu 147/head
Reza Rastak [Tue, 9 Jun 2020 04:34:32 +0000 (21:34 -0700)]
bc and python must be available on ubuntu

4 years agodeprecate unsupported ubuntu platforms 146/head
Reza Rastak [Tue, 9 Jun 2020 03:11:17 +0000 (20:11 -0700)]
deprecate unsupported ubuntu platforms

4 years agoMerge pull request #144 from tjhei/master-9.2.0
Timo Heister [Mon, 25 May 2020 13:27:20 +0000 (09:27 -0400)]
Merge pull request #144 from tjhei/master-9.2.0

switch master branch to v9.2.0

4 years agoswitch master branch to v9.2.0 144/head
Timo Heister [Thu, 21 May 2020 22:12:00 +0000 (18:12 -0400)]
switch master branch to v9.2.0

4 years agoMerge pull request #141 from tjhei/petsc_slepc_update
Timo Heister [Tue, 19 May 2020 18:39:35 +0000 (14:39 -0400)]
Merge pull request #141 from tjhei/petsc_slepc_update

Petsc/slepc update

4 years agoMerge pull request #137 from tjhei/adolc-v2.7.2
Uwe Köcher [Mon, 18 May 2020 17:46:10 +0000 (19:46 +0200)]
Merge pull request #137 from tjhei/adolc-v2.7.2

update adol-c to 2.7.2

4 years agoMerge pull request #136 from tjhei/arch_manjaro
Uwe Köcher [Mon, 18 May 2020 17:12:08 +0000 (19:12 +0200)]
Merge pull request #136 from tjhei/arch_manjaro

basic working version for arch/manjaro

4 years agoMerge pull request #140 from tjhei/ubuntu2004
Uwe Köcher [Mon, 18 May 2020 17:09:39 +0000 (19:09 +0200)]
Merge pull request #140 from tjhei/ubuntu2004

support ubuntu 20.04

4 years agoupdate slepc/petsc version to 3.13.x 141/head
Timo Heister [Mon, 18 May 2020 13:41:43 +0000 (09:41 -0400)]
update slepc/petsc version to 3.13.x

This is required as our old version only supports Python 2.x, which is
end-of-life now.

4 years agosupport ubuntu 20.04 140/head
Timo Heister [Mon, 18 May 2020 13:40:21 +0000 (09:40 -0400)]
support ubuntu 20.04

4 years agobump version number on master branch
Timo Heister [Fri, 15 May 2020 20:06:38 +0000 (16:06 -0400)]
bump version number on master branch

4 years agoupdate adol-c to 2.7.2 137/head
Timo Heister [Tue, 7 Apr 2020 18:10:01 +0000 (14:10 -0400)]
update adol-c to 2.7.2

4 years agoMerge pull request #138 from tjhei/ci_checkoutv2
Timo Heister [Sun, 12 Apr 2020 14:47:49 +0000 (10:47 -0400)]
Merge pull request #138 from tjhei/ci_checkoutv2

CI: switch to checkout v2

4 years agoCI: switch to checkout v2 138/head
Timo Heister [Thu, 9 Apr 2020 16:23:41 +0000 (12:23 -0400)]
CI: switch to checkout v2

this might fix occasional reference is not a tree errors.

4 years agobasic working version for arch/manjaro 136/head
Timo Heister [Mon, 2 Mar 2020 21:53:23 +0000 (16:53 -0500)]
basic working version for arch/manjaro

4 years agoMerge pull request #134 from tjhei/test_petsc_on_osx
Uwe Köcher [Tue, 28 Jan 2020 19:35:06 +0000 (20:35 +0100)]
Merge pull request #134 from tjhei/test_petsc_on_osx

add github action to include petsc on OSX

4 years agoadd github action to include petsc on OSX 134/head
Timo Heister [Tue, 28 Jan 2020 16:27:04 +0000 (11:27 -0500)]
add github action to include petsc on OSX

4 years agoMerge pull request #132 from tjhei/tjhei-osx-ci
Uwe Köcher [Fri, 10 Jan 2020 07:56:19 +0000 (08:56 +0100)]
Merge pull request #132 from tjhei/tjhei-osx-ci

simple continuous integration using github actions

4 years agouse github actions for CI 132/head
Timo Heister [Sun, 29 Dec 2019 20:33:11 +0000 (15:33 -0500)]
use github actions for CI

use github actions for some simple build tests:
- ubuntu 18: MPI, gcc, p4est and deal.II
- OSX minimal: clang, serial, just deal.II
- OSX parallel: gcc9, MPI, p4est and deal.II

4 years agoMerge pull request #131 from tjhei/osx-support
Uwe Köcher [Thu, 9 Jan 2020 08:06:52 +0000 (09:06 +0100)]
Merge pull request #131 from tjhei/osx-support

OSX 10.14 and 10.15 support

4 years agoOSX 10.14 and 10.15 support 131/head
Timo Heister [Sun, 29 Dec 2019 21:26:29 +0000 (16:26 -0500)]
OSX 10.14 and 10.15 support

- add platform detection
- update homebrew instructions

4 years agoMerge pull request #128 from tjhei/osx-update
Uwe Köcher [Tue, 24 Dec 2019 21:02:35 +0000 (22:02 +0100)]
Merge pull request #128 from tjhei/osx-update

OSX  doc update

4 years agoMerge pull request #92 from tjhei/update_trilinos_12_12
Uwe Köcher [Tue, 24 Dec 2019 15:19:30 +0000 (16:19 +0100)]
Merge pull request #92 from tjhei/update_trilinos_12_12

update trilinos

4 years agoMerge pull request #129 from tjhei/openblas_update
Uwe Köcher [Tue, 24 Dec 2019 15:14:19 +0000 (16:14 +0100)]
Merge pull request #129 from tjhei/openblas_update

update openblas to 0.3.7

4 years agodisable tpetra is using MKL 92/head
Timo Heister [Mon, 23 Dec 2019 23:12:50 +0000 (18:12 -0500)]
disable tpetra is using MKL

4 years agoupdate openblas to 0.3.7 129/head
Timo Heister [Mon, 23 Dec 2019 22:51:59 +0000 (17:51 -0500)]
update openblas to 0.3.7

this fixes compilation on intel compilers

4 years agoupdate OSX documentation 128/head
Timo Heister [Mon, 23 Dec 2019 22:49:03 +0000 (17:49 -0500)]
update OSX documentation

4 years agoupdate trilinos version
Timo Heister [Fri, 20 Dec 2019 21:41:46 +0000 (16:41 -0500)]
update trilinos version

4 years agodisable ifpack2 to make it compile
Timo Heister [Fri, 8 Mar 2019 15:09:59 +0000 (08:09 -0700)]
disable ifpack2 to make it compile

4 years agoupdate to 12.14.1
Timo Heister [Fri, 8 Mar 2019 14:09:20 +0000 (07:09 -0700)]
update to 12.14.1

4 years agofix inst
Timo Heister [Wed, 6 Feb 2019 22:29:38 +0000 (15:29 -0700)]
fix inst

4 years agoadd unoffical master build
Timo Heister [Wed, 6 Feb 2019 20:00:05 +0000 (13:00 -0700)]
add unoffical master build

4 years agoupdate trilinos to 12.12
Timo Heister [Thu, 20 Sep 2018 19:27:20 +0000 (13:27 -0600)]
update trilinos to 12.12

- update to 12.12
- enable complex support
- require tpetra and add instantiations (fixes problems in
https://github.com/dealii/dealii/pull/7180 )
- disable boost (not needed and causes build to fail)

4 years agoMerge pull request #127 from tjhei/checksum_alternatives
Timo Heister [Fri, 20 Dec 2019 21:31:04 +0000 (16:31 -0500)]
Merge pull request #127 from tjhei/checksum_alternatives

allow checksum alternatives to fix trilinos download

4 years agoallow checksum alternatives to fix trilinos download 127/head
Timo Heister [Wed, 18 Dec 2019 21:54:54 +0000 (16:54 -0500)]
allow checksum alternatives to fix trilinos download

- allow alternative checksums to be specified
- add a second checksum for trilinos as the original file changed

4 years agoMerge pull request #124 from tjhei/ubuntu19
Uwe Köcher [Tue, 8 Oct 2019 14:14:59 +0000 (16:14 +0200)]
Merge pull request #124 from tjhei/ubuntu19

add ubuntu19 support

4 years agoMerge pull request #123 from tjhei/ubuntu_zlib
Uwe Köcher [Tue, 8 Oct 2019 14:14:18 +0000 (16:14 +0200)]
Merge pull request #123 from tjhei/ubuntu_zlib

add zlib as ubuntu dependency

4 years agoadd ubuntu19 support 124/head
Timo Heister [Sat, 5 Oct 2019 01:10:41 +0000 (21:10 -0400)]
add ubuntu19 support

4 years agoadd zlib as ubuntu dependency 123/head
Timo Heister [Sat, 5 Oct 2019 01:04:57 +0000 (21:04 -0400)]
add zlib as ubuntu dependency

5 years agoMerge pull request #121 from tjhei/update_petsc
Uwe Köcher [Mon, 26 Aug 2019 07:16:32 +0000 (09:16 +0200)]
Merge pull request #121 from tjhei/update_petsc

update petsc

5 years agoMerge pull request #120 from tjhei/update_hdf5
Uwe Köcher [Mon, 26 Aug 2019 07:14:35 +0000 (09:14 +0200)]
Merge pull request #120 from tjhei/update_hdf5

update hdf5 to 1.10.5

5 years agoupdate slepc 121/head
Timo Heister [Sat, 24 Aug 2019 20:09:00 +0000 (16:09 -0400)]
update slepc

5 years agoupdate petsc
Timo Heister [Sat, 24 Aug 2019 19:50:21 +0000 (15:50 -0400)]
update petsc

this old version does not compile with newer MPI 3.0:
```
/home/heister/shared-dealii/dealii-v9.1.1/tmp/build/petsc-
lite-3.7.6/src/sys/objects/init.c:412:40: error: ‘MPI_Handler_function’
undeclared
```

5 years agoupdate hdf5 to 1.10.5 120/head
Timo Heister [Fri, 23 Aug 2019 18:05:20 +0000 (14:05 -0400)]
update hdf5 to 1.10.5

Required to link with a newer version of MPI:
/home/heister/shared-
dealii/dealii-v9.1.1/tmp/unpack/hdf5-1.10.1/testpar/t_cache.c:1222:27:
error: call to ‘MPI_Address’ declared with attribute error: MPI_Address
was removed in MPI-3.0.  Use MPI_Get_address instead.

This should go into 9.1 as well.

5 years agoMerge pull request #113 from tjhei/p4est_to_2.2
Uwe Köcher [Fri, 24 May 2019 08:09:52 +0000 (10:09 +0200)]
Merge pull request #113 from tjhei/p4est_to_2.2

update p4est to 2.2

5 years agoMerge pull request #116 from tjhei/update_master
Uwe Köcher [Thu, 23 May 2019 07:59:33 +0000 (09:59 +0200)]
Merge pull request #116 from tjhei/update_master

update master version

5 years agoupdate master 116/head
Timo Heister [Mon, 13 May 2019 16:42:17 +0000 (10:42 -0600)]
update master

5 years agoMerge pull request #115 from tjhei/optimized_bash_fix
Uwe Köcher [Fri, 12 Apr 2019 07:26:22 +0000 (09:26 +0200)]
Merge pull request #115 from tjhei/optimized_bash_fix

#111 and fix bash multiline on master

5 years agofix bash multiline 115/head
Timo Heister [Thu, 11 Apr 2019 21:44:11 +0000 (15:44 -0600)]
fix bash multiline

5 years agoupdate p4est to 2.2 113/head
Timo Heister [Thu, 28 Mar 2019 02:14:20 +0000 (20:14 -0600)]
update p4est to 2.2

5 years agoMerge pull request #111 from tjhei/native_opt
Uwe Köcher [Fri, 25 Jan 2019 16:30:33 +0000 (10:30 -0600)]
Merge pull request #111 from tjhei/native_opt

add optimization option

5 years agoadd optimization option 111/head
Timo Heister [Wed, 25 Apr 2018 15:39:17 +0000 (11:39 -0400)]
add optimization option

Introduce a new settings to allow native optimizations. This currently
affects PETSc and deal.II (basically setting march=native).

5 years agoMerge pull request #110 from tjhei/opencascade_gmsh
Uwe Köcher [Fri, 16 Nov 2018 19:14:33 +0000 (20:14 +0100)]
Merge pull request #110 from tjhei/opencascade_gmsh

gmsh: use opencascade using CASROOT, fix linking

5 years agoopencascade and gmsh: export CASROOT, fix libs 110/head
Timo Heister [Thu, 15 Nov 2018 19:20:07 +0000 (14:20 -0500)]
opencascade and gmsh: export CASROOT, fix libs

- opencascade support inside gmsh is needed for deal.II.
- gmsh finds opencascade using the CASROOT env variable, so export it
when we install opencascade.
- set rpath in gmsh installation to be able to find libs
- disable petsc/slepc in gmsh (not needed)

5 years agoMerge pull request #109 from tjhei/gmsh-fix
Uwe Köcher [Sun, 11 Nov 2018 13:05:16 +0000 (14:05 +0100)]
Merge pull request #109 from tjhei/gmsh-fix

fix gmsh

5 years agofix gmsh 109/head
Timo Heister [Sat, 10 Nov 2018 00:57:19 +0000 (17:57 -0700)]
fix gmsh

5 years agoMerge pull request #108 from tjhei/gmsh
Uwe Köcher [Fri, 9 Nov 2018 17:34:31 +0000 (18:34 +0100)]
Merge pull request #108 from tjhei/gmsh

add Gmsh

5 years agoMerge pull request #107 from tjhei/fix_path_directives
Uwe Köcher [Fri, 9 Nov 2018 17:31:33 +0000 (18:31 +0100)]
Merge pull request #107 from tjhei/fix_path_directives

fix path directive in cmake package

5 years agoadd gmsh 108/head
Timo Heister [Fri, 9 Nov 2018 16:24:47 +0000 (11:24 -0500)]
add gmsh

this is a dependency starting with deal.II 9.0.

This needs to also go on the dealii-9.0 branch

5 years agofix path directive in cmake package 107/head
Timo Heister [Fri, 9 Nov 2018 16:18:34 +0000 (11:18 -0500)]
fix path directive in cmake package

otherwise $PATH will be expanded in the config file

5 years agoUpdate README.md
Uwe Köcher [Thu, 8 Nov 2018 19:00:53 +0000 (20:00 +0100)]
Update README.md

5 years agoadd VERSION
Timo Heister [Thu, 8 Nov 2018 16:44:02 +0000 (11:44 -0500)]
add VERSION

5 years agoMerge pull request #106 from tjhei/opensuse_fixes2
Uwe Köcher [Thu, 1 Nov 2018 08:31:28 +0000 (09:31 +0100)]
Merge pull request #106 from tjhei/opensuse_fixes2

opensuse fixes

5 years agoopensuse fixes 106/head
Timo Heister [Tue, 30 Oct 2018 14:48:48 +0000 (10:48 -0400)]
opensuse fixes

- switch to mpich (fewer runtime warnings)
- install ld gold (avoids slow linking)

5 years agoMerge pull request #105 from tjhei/fix_scalapack_dir
Uwe Köcher [Fri, 26 Oct 2018 10:59:10 +0000 (12:59 +0200)]
Merge pull request #105 from tjhei/fix_scalapack_dir

fix SCALAPACK_DIR

5 years agofix SCALAPACK_DIR 105/head
Timo Heister [Wed, 24 Oct 2018 17:39:23 +0000 (13:39 -0400)]
fix SCALAPACK_DIR

5 years agoUpdate README.md
Uwe Köcher [Mon, 22 Oct 2018 13:11:43 +0000 (15:11 +0200)]
Update README.md

5 years agoMerge pull request #102 from koecher/git-cherry-pick
Uwe Köcher [Mon, 22 Oct 2018 12:37:50 +0000 (14:37 +0200)]
Merge pull request #102 from koecher/git-cherry-pick

git cherry-pick enhancement

5 years agoMerge pull request #104 from tjhei/update-assimp v9.0.1
Uwe Köcher [Wed, 17 Oct 2018 16:40:53 +0000 (18:40 +0200)]
Merge pull request #104 from tjhei/update-assimp

update assimp to 4.1.0

5 years agofix checksum 104/head
Timo Heister [Wed, 17 Oct 2018 16:26:18 +0000 (12:26 -0400)]
fix checksum

5 years agoMerge pull request #103 from tjhei/opensuse_fixes
Uwe Köcher [Wed, 17 Oct 2018 16:18:58 +0000 (18:18 +0200)]
Merge pull request #103 from tjhei/opensuse_fixes

opensuse fixes

5 years agomoves git cherry-pick to package_unpack just before package_specific_patch 102/head
Uwe Köcher [Wed, 17 Oct 2018 08:00:11 +0000 (10:00 +0200)]
moves git cherry-pick to package_unpack just before package_specific_patch

5 years agoopensuse fixes 103/head
Timo Heister [Tue, 16 Oct 2018 19:23:12 +0000 (15:23 -0400)]
opensuse fixes

- missing python2
- missing g++ (devel_C_C++ only installs cpp)
- add documentation for mpi wrappers
- trilinos also wants libmetis to work (not sure why)

5 years agoMerge pull request #101 from koecher/dealii-9.0.1
Timo Heister [Tue, 16 Oct 2018 19:20:07 +0000 (15:20 -0400)]
Merge pull request #101 from koecher/dealii-9.0.1

switch deal.II v9.0.0 -> v9.0.1

5 years agodisables exemple for DEAL_CHERRYPICKCOMMITS and adds the variable
Uwe Köcher [Tue, 16 Oct 2018 19:01:48 +0000 (21:01 +0200)]
disables exemple for DEAL_CHERRYPICKCOMMITS and adds the variable

5 years agobugfix: add missing cd .. for packing git
Uwe Köcher [Tue, 16 Oct 2018 18:22:48 +0000 (20:22 +0200)]
bugfix: add missing cd .. for packing git

5 years agoimplements git cherry-pick for STABLE_BUILD
Uwe Köcher [Tue, 16 Oct 2018 17:35:28 +0000 (19:35 +0200)]
implements git cherry-pick for STABLE_BUILD

5 years agoswitch deal.II v9.0.0 -> v9.0.1 101/head
Uwe Köcher [Tue, 16 Oct 2018 15:42:57 +0000 (17:42 +0200)]
switch deal.II v9.0.0 -> v9.0.1

5 years agoMerge pull request #96 from tjhei/openblas
Uwe Köcher [Fri, 12 Oct 2018 18:18:55 +0000 (20:18 +0200)]
Merge pull request #96 from tjhei/openblas

add openblas

5 years agoMerge pull request #98 from tjhei/opensuse15
Uwe Köcher [Fri, 12 Oct 2018 18:18:33 +0000 (20:18 +0200)]
Merge pull request #98 from tjhei/opensuse15

support opensuse 15

5 years agoMerge pull request #99 from tjhei/fix_numdiff_path v9.0.0
Uwe Köcher [Fri, 12 Oct 2018 18:15:12 +0000 (20:15 +0200)]
Merge pull request #99 from tjhei/fix_numdiff_path

fix numdiff path

5 years agoMerge pull request #95 from tjhei/cmake-path-fix
Uwe Köcher [Fri, 12 Oct 2018 18:13:30 +0000 (20:13 +0200)]
Merge pull request #95 from tjhei/cmake-path-fix

fix cmake path

5 years agoalso fix install path from source 95/head
Timo Heister [Thu, 11 Oct 2018 14:53:13 +0000 (16:53 +0200)]
also fix install path from source

5 years agofix numdiff path 99/head
Timo Heister [Thu, 11 Oct 2018 14:30:49 +0000 (16:30 +0200)]
fix numdiff path

5 years agosupport opensuse 15 98/head
Timo Heister [Thu, 11 Oct 2018 13:58:53 +0000 (15:58 +0200)]
support opensuse 15

5 years agoMerge pull request #97 from tjhei/new-mirror
Uwe Köcher [Tue, 9 Oct 2018 07:23:57 +0000 (09:23 +0200)]
Merge pull request #97 from tjhei/new-mirror

change mirror server url

5 years agoexport BLAS_LIB, fix petsc 96/head
Timo Heister [Fri, 5 Oct 2018 16:25:43 +0000 (18:25 +0200)]
export BLAS_LIB, fix petsc

5 years agochange mirror 97/head
Timo Heister [Fri, 5 Oct 2018 15:26:31 +0000 (17:26 +0200)]
change mirror

1. url at clemson changed
2. also add tjhei.info (which redirects to clemson for now, but allows
me to change it

5 years agoadd openblas
Timo Heister [Fri, 5 Oct 2018 11:49:52 +0000 (13:49 +0200)]
add openblas

5 years agofix cmake path
Timo Heister [Fri, 5 Oct 2018 11:36:27 +0000 (13:36 +0200)]
fix cmake path

cmake sets the incorrect install path if you use "once:cmake"

5 years agoupdate assimp to 4.1.0
Timo Heister [Mon, 24 Sep 2018 20:56:44 +0000 (14:56 -0600)]
update assimp to 4.1.0

6 years agoMerge pull request #90 from tjhei/arpack-fixes
Uwe Köcher [Thu, 6 Sep 2018 07:51:45 +0000 (09:51 +0200)]
Merge pull request #90 from tjhei/arpack-fixes

fix arpack-ng

6 years agoMerge pull request #69 from tjhei/scalapack
Uwe Köcher [Thu, 6 Sep 2018 07:48:49 +0000 (09:48 +0200)]
Merge pull request #69 from tjhei/scalapack

add export for SCALAPACK

6 years agofix arpack-ng 90/head
Timo Heister [Sat, 11 Aug 2018 15:59:10 +0000 (11:59 -0400)]
fix arpack-ng

switch from master to building the latest release (3.6.2) and disable debian multiarch path names for the lib location. Otherwise the libs get installed into something like lib/x86_64-linux-gnu/ and deal.II can not find it.

6 years agoaddress comment 69/head
Timo Heister [Wed, 8 Aug 2018 16:21:53 +0000 (18:21 +0200)]
address comment

6 years agoMerge pull request #87 from koecher/p4est-zlib
Uwe Köcher [Wed, 18 Jul 2018 13:34:41 +0000 (14:34 +0100)]
Merge pull request #87 from koecher/p4est-zlib

p4est: corrects zlib detection for user-installed zlib

6 years agoMerge pull request #88 from fvanmaele/patch-1
Uwe Köcher [Wed, 18 Jul 2018 13:33:58 +0000 (14:33 +0100)]
Merge pull request #88 from fvanmaele/patch-1

Update apt-get instructions for debian9.platform


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