]> https://gitweb.dealii.org/ - candi.git/log
candi.git
3 years agoUpdate to latest arpack version 3.8.0 172/head
Fabian Castelli [Wed, 19 May 2021 13:32:03 +0000 (15:32 +0200)]
Update to latest arpack version 3.8.0

3 years agoMerge pull request #150 from tjhei/trilinos_mkl
Timo Heister [Thu, 13 May 2021 15:35:40 +0000 (11:35 -0400)]
Merge pull request #150 from tjhei/trilinos_mkl

fix trilinos tpetra when using intel MKL

3 years agoMerge pull request #170 from gfcas/skip_prompts
Timo Heister [Thu, 6 May 2021 19:50:13 +0000 (15:50 -0400)]
Merge pull request #170 from gfcas/skip_prompts

Add option to skip prompts

3 years agoShort documentation of skip option 170/head
Fabian [Thu, 6 May 2021 07:43:56 +0000 (09:43 +0200)]
Short documentation of skip option

3 years agoAdd option to skip prompts
Fabian [Thu, 6 May 2021 07:05:17 +0000 (09:05 +0200)]
Add option to skip prompts

3 years agoMerge pull request #145 from tjhei/remove_nanoflann
Uwe Köcher [Tue, 6 Apr 2021 15:53:05 +0000 (17:53 +0200)]
Merge pull request #145 from tjhei/remove_nanoflann

remove nanoflann

3 years agoMerge pull request #166 from tjhei/netcdf
Uwe Köcher [Tue, 6 Apr 2021 15:52:44 +0000 (17:52 +0200)]
Merge pull request #166 from tjhei/netcdf

add netcdf

3 years agoMerge pull request #164 from koecher/guess-platform
Uwe Köcher [Tue, 6 Apr 2021 15:49:35 +0000 (17:49 +0200)]
Merge pull request #164 from koecher/guess-platform

Guess platform

3 years agoMerge pull request #165 from tjhei/muparser
Uwe Köcher [Wed, 27 Jan 2021 12:36:05 +0000 (13:36 +0100)]
Merge pull request #165 from tjhei/muparser

add muparser as separate package

3 years agoadd netcdf 4.7.4 166/head
Timo Heister [Tue, 26 Jan 2021 18:52:40 +0000 (13:52 -0500)]
add netcdf 4.7.4

3 years agoadd muparser as separate package 165/head
Timo Heister [Tue, 26 Jan 2021 16:29:30 +0000 (11:29 -0500)]
add muparser as separate package

3 years agoguess_platform: use major version for debian as well 164/head
Uwe Köcher [Fri, 22 Jan 2021 22:52:55 +0000 (23:52 +0100)]
guess_platform: use major version for debian as well

3 years agoremoves opensuse unsupported platform files
Uwe Köcher [Fri, 22 Jan 2021 22:42:54 +0000 (23:42 +0100)]
removes opensuse unsupported platform files

3 years agoguess_platform: find major os version
Uwe Köcher [Fri, 22 Jan 2021 22:38:49 +0000 (23:38 +0100)]
guess_platform: find major os version

3 years agoadds fedora29 platform file
Uwe Köcher [Fri, 22 Jan 2021 21:58:26 +0000 (22:58 +0100)]
adds fedora29 platform file

3 years agocandi.sh: new guess_platform: removes dependency from lsb_release
Uwe Köcher [Fri, 22 Jan 2021 21:48:24 +0000 (22:48 +0100)]
candi.sh: new guess_platform: removes dependency from lsb_release

3 years agoMerge pull request #158 from tjhei/ci_linux_blas
Timo Heister [Wed, 20 Jan 2021 15:57:03 +0000 (10:57 -0500)]
Merge pull request #158 from tjhei/ci_linux_blas

CI: add ubuntu 20.04 with openblas, rename and restructure OSX

3 years agoMerge pull request #153 from tjhei/hdf5-1.10.7
Uwe Köcher [Wed, 20 Jan 2021 09:09:43 +0000 (10:09 +0100)]
Merge pull request #153 from tjhei/hdf5-1.10.7

hdf5: bump to 1.10.7

3 years agoMerge pull request #161 from tjhei/openblas_fixes
Uwe Köcher [Wed, 20 Jan 2021 09:05:57 +0000 (10:05 +0100)]
Merge pull request #161 from tjhei/openblas_fixes

openblas: update to 0.3.13 and fix OSX

3 years agoMerge pull request #162 from tjhei/python3
Uwe Köcher [Wed, 20 Jan 2021 09:04:24 +0000 (10:04 +0100)]
Merge pull request #162 from tjhei/python3

handle python3 correctly

3 years agohandle python3 correctly 162/head
Timo Heister [Sun, 20 Dec 2020 16:53:10 +0000 (11:53 -0500)]
handle python3 correctly

If "python" does not exist in the environment, we set PYTHONVER to the
empty string, which makes configuration fail. Fix this.

3 years agoMerge pull request #160 from tjhei/centos_cmake
Timo Heister [Sat, 9 Jan 2021 19:08:13 +0000 (14:08 -0500)]
Merge pull request #160 from tjhei/centos_cmake

take over #154 and #157 (centos cmake) to master branch

3 years agohdf5: bump to 1.10.7 153/head
Timo Heister [Sun, 20 Dec 2020 17:13:49 +0000 (12:13 -0500)]
hdf5: bump to 1.10.7

3 years agofix openblas on OSX 161/head
Timo Heister [Sun, 20 Dec 2020 19:59:47 +0000 (14:59 -0500)]
fix openblas on OSX

3 years agoupdate openblas to 0.3.13
Timo Heister [Sun, 20 Dec 2020 19:59:39 +0000 (14:59 -0500)]
update openblas to 0.3.13

I am getting compile errors with the old version on ubuntu 20.04:
getarch_2nd.c:12:35: error: ‘SGEMM_DEFAULT_UNROLL_M’ undeclared (first
use in this function); did you mean ‘XGEMM_DEFAULT_UNROLL_M’?

An update fixes this.

3 years agoAddresses issue #155 old CentOS compilers 160/head
ohcfe [Wed, 23 Dec 2020 11:17:17 +0000 (06:17 -0500)]
Addresses issue #155 old CentOS compilers

3 years agoAddresses issue #154 CentOS cmake is too old
ohcfe [Wed, 23 Dec 2020 11:06:23 +0000 (06:06 -0500)]
Addresses issue #154 CentOS cmake is too old

3 years agoMerge pull request #152 from tjhei/ci_lapack
Timo Heister [Fri, 8 Jan 2021 20:34:02 +0000 (15:34 -0500)]
Merge pull request #152 from tjhei/ci_lapack

CI: fix OSX tester

3 years agodebug build 158/head
Timo Heister [Fri, 1 Jan 2021 14:41:41 +0000 (09:41 -0500)]
debug build

3 years agouse older cmake
Timo Heister [Fri, 1 Jan 2021 14:41:35 +0000 (09:41 -0500)]
use older cmake

3 years agooutput detailed.log
Timo Heister [Fri, 1 Jan 2021 14:40:01 +0000 (09:40 -0500)]
output detailed.log

3 years agoCI: add ubuntu 20.04 with openblas, rename and restructure OSX
Timo Heister [Thu, 31 Dec 2020 22:54:28 +0000 (17:54 -0500)]
CI: add ubuntu 20.04 with openblas, rename and restructure OSX

3 years agoCI: fix OSX build 152/head
Timo Heister [Sun, 20 Dec 2020 17:02:03 +0000 (12:02 -0500)]
CI: fix OSX build

- force cmake 3.18 as 9.2 does not support 3.19 (default in the VM)
- change the minimal build to use MPI as well (without it, blas is not
found for some reason). There is no good reason to test candi builds
without MPI.

3 years agoMerge pull request #148 from rezarastak/remove_threads
Timo Heister [Sun, 20 Dec 2020 16:39:15 +0000 (11:39 -0500)]
Merge pull request #148 from rezarastak/remove_threads

remove WITH_THREADS

4 years agofix trilinos tpetra when using intel MKL 150/head
Timo Heister [Tue, 23 Jun 2020 18:05:02 +0000 (14:05 -0400)]
fix trilinos tpetra when using intel MKL

The choice to disable TPetra when using MKL lead to several downstream
Trilinos configuration errors. Instead, just disable the two
instantiations that are missing in MKL. Tested to work correctly with
Intel 19.0.5 and MKL.

4 years agoremove WITH_THREADS 148/head
Reza Rastak [Wed, 10 Jun 2020 23:30:35 +0000 (16:30 -0700)]
remove WITH_THREADS

4 years agoMerge pull request #146 from rezarastak/deprecate_old_ubuntu
Timo Heister [Tue, 9 Jun 2020 22:15:04 +0000 (18:15 -0400)]
Merge pull request #146 from rezarastak/deprecate_old_ubuntu

deprecate unsupported ubuntu platforms

4 years agoMerge pull request #147 from rezarastak/required_ubuntu_packages
Timo Heister [Tue, 9 Jun 2020 22:14:38 +0000 (18:14 -0400)]
Merge pull request #147 from rezarastak/required_ubuntu_packages

bc and python must be available on ubuntu

4 years agobc and python must be available on ubuntu 147/head
Reza Rastak [Tue, 9 Jun 2020 04:34:32 +0000 (21:34 -0700)]
bc and python must be available on ubuntu

4 years agodeprecate unsupported ubuntu platforms 146/head
Reza Rastak [Tue, 9 Jun 2020 03:11:17 +0000 (20:11 -0700)]
deprecate unsupported ubuntu platforms

4 years agoremove nanoflann 145/head
Timo Heister [Wed, 27 May 2020 15:13:16 +0000 (11:13 -0400)]
remove nanoflann

nanoflann is deprecated in deal.II and removed in 9.3.0-pre

4 years agoMerge pull request #144 from tjhei/master-9.2.0
Timo Heister [Mon, 25 May 2020 13:27:20 +0000 (09:27 -0400)]
Merge pull request #144 from tjhei/master-9.2.0

switch master branch to v9.2.0

4 years agoswitch master branch to v9.2.0 144/head
Timo Heister [Thu, 21 May 2020 22:12:00 +0000 (18:12 -0400)]
switch master branch to v9.2.0

4 years agoMerge pull request #141 from tjhei/petsc_slepc_update
Timo Heister [Tue, 19 May 2020 18:39:35 +0000 (14:39 -0400)]
Merge pull request #141 from tjhei/petsc_slepc_update

Petsc/slepc update

4 years agoMerge pull request #137 from tjhei/adolc-v2.7.2
Uwe Köcher [Mon, 18 May 2020 17:46:10 +0000 (19:46 +0200)]
Merge pull request #137 from tjhei/adolc-v2.7.2

update adol-c to 2.7.2

4 years agoMerge pull request #136 from tjhei/arch_manjaro
Uwe Köcher [Mon, 18 May 2020 17:12:08 +0000 (19:12 +0200)]
Merge pull request #136 from tjhei/arch_manjaro

basic working version for arch/manjaro

4 years agoMerge pull request #140 from tjhei/ubuntu2004
Uwe Köcher [Mon, 18 May 2020 17:09:39 +0000 (19:09 +0200)]
Merge pull request #140 from tjhei/ubuntu2004

support ubuntu 20.04

4 years agoupdate slepc/petsc version to 3.13.x 141/head
Timo Heister [Mon, 18 May 2020 13:41:43 +0000 (09:41 -0400)]
update slepc/petsc version to 3.13.x

This is required as our old version only supports Python 2.x, which is
end-of-life now.

4 years agosupport ubuntu 20.04 140/head
Timo Heister [Mon, 18 May 2020 13:40:21 +0000 (09:40 -0400)]
support ubuntu 20.04

4 years agobump version number on master branch
Timo Heister [Fri, 15 May 2020 20:06:38 +0000 (16:06 -0400)]
bump version number on master branch

4 years agoupdate adol-c to 2.7.2 137/head
Timo Heister [Tue, 7 Apr 2020 18:10:01 +0000 (14:10 -0400)]
update adol-c to 2.7.2

4 years agoMerge pull request #138 from tjhei/ci_checkoutv2
Timo Heister [Sun, 12 Apr 2020 14:47:49 +0000 (10:47 -0400)]
Merge pull request #138 from tjhei/ci_checkoutv2

CI: switch to checkout v2

4 years agoCI: switch to checkout v2 138/head
Timo Heister [Thu, 9 Apr 2020 16:23:41 +0000 (12:23 -0400)]
CI: switch to checkout v2

this might fix occasional reference is not a tree errors.

4 years agobasic working version for arch/manjaro 136/head
Timo Heister [Mon, 2 Mar 2020 21:53:23 +0000 (16:53 -0500)]
basic working version for arch/manjaro

4 years agoMerge pull request #134 from tjhei/test_petsc_on_osx
Uwe Köcher [Tue, 28 Jan 2020 19:35:06 +0000 (20:35 +0100)]
Merge pull request #134 from tjhei/test_petsc_on_osx

add github action to include petsc on OSX

4 years agoadd github action to include petsc on OSX 134/head
Timo Heister [Tue, 28 Jan 2020 16:27:04 +0000 (11:27 -0500)]
add github action to include petsc on OSX

4 years agoMerge pull request #132 from tjhei/tjhei-osx-ci
Uwe Köcher [Fri, 10 Jan 2020 07:56:19 +0000 (08:56 +0100)]
Merge pull request #132 from tjhei/tjhei-osx-ci

simple continuous integration using github actions

4 years agouse github actions for CI 132/head
Timo Heister [Sun, 29 Dec 2019 20:33:11 +0000 (15:33 -0500)]
use github actions for CI

use github actions for some simple build tests:
- ubuntu 18: MPI, gcc, p4est and deal.II
- OSX minimal: clang, serial, just deal.II
- OSX parallel: gcc9, MPI, p4est and deal.II

4 years agoMerge pull request #131 from tjhei/osx-support
Uwe Köcher [Thu, 9 Jan 2020 08:06:52 +0000 (09:06 +0100)]
Merge pull request #131 from tjhei/osx-support

OSX 10.14 and 10.15 support

4 years agoOSX 10.14 and 10.15 support 131/head
Timo Heister [Sun, 29 Dec 2019 21:26:29 +0000 (16:26 -0500)]
OSX 10.14 and 10.15 support

- add platform detection
- update homebrew instructions

4 years agoMerge pull request #128 from tjhei/osx-update
Uwe Köcher [Tue, 24 Dec 2019 21:02:35 +0000 (22:02 +0100)]
Merge pull request #128 from tjhei/osx-update

OSX  doc update

4 years agoMerge pull request #92 from tjhei/update_trilinos_12_12
Uwe Köcher [Tue, 24 Dec 2019 15:19:30 +0000 (16:19 +0100)]
Merge pull request #92 from tjhei/update_trilinos_12_12

update trilinos

4 years agoMerge pull request #129 from tjhei/openblas_update
Uwe Köcher [Tue, 24 Dec 2019 15:14:19 +0000 (16:14 +0100)]
Merge pull request #129 from tjhei/openblas_update

update openblas to 0.3.7

4 years agodisable tpetra is using MKL 92/head
Timo Heister [Mon, 23 Dec 2019 23:12:50 +0000 (18:12 -0500)]
disable tpetra is using MKL

4 years agoupdate openblas to 0.3.7 129/head
Timo Heister [Mon, 23 Dec 2019 22:51:59 +0000 (17:51 -0500)]
update openblas to 0.3.7

this fixes compilation on intel compilers

4 years agoupdate OSX documentation 128/head
Timo Heister [Mon, 23 Dec 2019 22:49:03 +0000 (17:49 -0500)]
update OSX documentation

4 years agoupdate trilinos version
Timo Heister [Fri, 20 Dec 2019 21:41:46 +0000 (16:41 -0500)]
update trilinos version

4 years agodisable ifpack2 to make it compile
Timo Heister [Fri, 8 Mar 2019 15:09:59 +0000 (08:09 -0700)]
disable ifpack2 to make it compile

4 years agoupdate to 12.14.1
Timo Heister [Fri, 8 Mar 2019 14:09:20 +0000 (07:09 -0700)]
update to 12.14.1

4 years agofix inst
Timo Heister [Wed, 6 Feb 2019 22:29:38 +0000 (15:29 -0700)]
fix inst

4 years agoadd unoffical master build
Timo Heister [Wed, 6 Feb 2019 20:00:05 +0000 (13:00 -0700)]
add unoffical master build

4 years agoupdate trilinos to 12.12
Timo Heister [Thu, 20 Sep 2018 19:27:20 +0000 (13:27 -0600)]
update trilinos to 12.12

- update to 12.12
- enable complex support
- require tpetra and add instantiations (fixes problems in
https://github.com/dealii/dealii/pull/7180 )
- disable boost (not needed and causes build to fail)

4 years agoMerge pull request #127 from tjhei/checksum_alternatives
Timo Heister [Fri, 20 Dec 2019 21:31:04 +0000 (16:31 -0500)]
Merge pull request #127 from tjhei/checksum_alternatives

allow checksum alternatives to fix trilinos download

4 years agoallow checksum alternatives to fix trilinos download 127/head
Timo Heister [Wed, 18 Dec 2019 21:54:54 +0000 (16:54 -0500)]
allow checksum alternatives to fix trilinos download

- allow alternative checksums to be specified
- add a second checksum for trilinos as the original file changed

4 years agoMerge pull request #124 from tjhei/ubuntu19
Uwe Köcher [Tue, 8 Oct 2019 14:14:59 +0000 (16:14 +0200)]
Merge pull request #124 from tjhei/ubuntu19

add ubuntu19 support

4 years agoMerge pull request #123 from tjhei/ubuntu_zlib
Uwe Köcher [Tue, 8 Oct 2019 14:14:18 +0000 (16:14 +0200)]
Merge pull request #123 from tjhei/ubuntu_zlib

add zlib as ubuntu dependency

4 years agoadd ubuntu19 support 124/head
Timo Heister [Sat, 5 Oct 2019 01:10:41 +0000 (21:10 -0400)]
add ubuntu19 support

4 years agoadd zlib as ubuntu dependency 123/head
Timo Heister [Sat, 5 Oct 2019 01:04:57 +0000 (21:04 -0400)]
add zlib as ubuntu dependency

5 years agoMerge pull request #121 from tjhei/update_petsc
Uwe Köcher [Mon, 26 Aug 2019 07:16:32 +0000 (09:16 +0200)]
Merge pull request #121 from tjhei/update_petsc

update petsc

5 years agoMerge pull request #120 from tjhei/update_hdf5
Uwe Köcher [Mon, 26 Aug 2019 07:14:35 +0000 (09:14 +0200)]
Merge pull request #120 from tjhei/update_hdf5

update hdf5 to 1.10.5

5 years agoupdate slepc 121/head
Timo Heister [Sat, 24 Aug 2019 20:09:00 +0000 (16:09 -0400)]
update slepc

5 years agoupdate petsc
Timo Heister [Sat, 24 Aug 2019 19:50:21 +0000 (15:50 -0400)]
update petsc

this old version does not compile with newer MPI 3.0:
```
/home/heister/shared-dealii/dealii-v9.1.1/tmp/build/petsc-
lite-3.7.6/src/sys/objects/init.c:412:40: error: ‘MPI_Handler_function’
undeclared
```

5 years agoupdate hdf5 to 1.10.5 120/head
Timo Heister [Fri, 23 Aug 2019 18:05:20 +0000 (14:05 -0400)]
update hdf5 to 1.10.5

Required to link with a newer version of MPI:
/home/heister/shared-
dealii/dealii-v9.1.1/tmp/unpack/hdf5-1.10.1/testpar/t_cache.c:1222:27:
error: call to ‘MPI_Address’ declared with attribute error: MPI_Address
was removed in MPI-3.0.  Use MPI_Get_address instead.

This should go into 9.1 as well.

5 years agoMerge pull request #113 from tjhei/p4est_to_2.2
Uwe Köcher [Fri, 24 May 2019 08:09:52 +0000 (10:09 +0200)]
Merge pull request #113 from tjhei/p4est_to_2.2

update p4est to 2.2

5 years agoMerge pull request #116 from tjhei/update_master
Uwe Köcher [Thu, 23 May 2019 07:59:33 +0000 (09:59 +0200)]
Merge pull request #116 from tjhei/update_master

update master version

5 years agoupdate master 116/head
Timo Heister [Mon, 13 May 2019 16:42:17 +0000 (10:42 -0600)]
update master

5 years agoMerge pull request #115 from tjhei/optimized_bash_fix
Uwe Köcher [Fri, 12 Apr 2019 07:26:22 +0000 (09:26 +0200)]
Merge pull request #115 from tjhei/optimized_bash_fix

#111 and fix bash multiline on master

5 years agofix bash multiline 115/head
Timo Heister [Thu, 11 Apr 2019 21:44:11 +0000 (15:44 -0600)]
fix bash multiline

5 years agoupdate p4est to 2.2 113/head
Timo Heister [Thu, 28 Mar 2019 02:14:20 +0000 (20:14 -0600)]
update p4est to 2.2

5 years agoMerge pull request #111 from tjhei/native_opt
Uwe Köcher [Fri, 25 Jan 2019 16:30:33 +0000 (10:30 -0600)]
Merge pull request #111 from tjhei/native_opt

add optimization option

5 years agoadd optimization option 111/head
Timo Heister [Wed, 25 Apr 2018 15:39:17 +0000 (11:39 -0400)]
add optimization option

Introduce a new settings to allow native optimizations. This currently
affects PETSc and deal.II (basically setting march=native).

5 years agoMerge pull request #110 from tjhei/opencascade_gmsh
Uwe Köcher [Fri, 16 Nov 2018 19:14:33 +0000 (20:14 +0100)]
Merge pull request #110 from tjhei/opencascade_gmsh

gmsh: use opencascade using CASROOT, fix linking

5 years agoopencascade and gmsh: export CASROOT, fix libs 110/head
Timo Heister [Thu, 15 Nov 2018 19:20:07 +0000 (14:20 -0500)]
opencascade and gmsh: export CASROOT, fix libs

- opencascade support inside gmsh is needed for deal.II.
- gmsh finds opencascade using the CASROOT env variable, so export it
when we install opencascade.
- set rpath in gmsh installation to be able to find libs
- disable petsc/slepc in gmsh (not needed)

5 years agoMerge pull request #109 from tjhei/gmsh-fix
Uwe Köcher [Sun, 11 Nov 2018 13:05:16 +0000 (14:05 +0100)]
Merge pull request #109 from tjhei/gmsh-fix

fix gmsh

5 years agofix gmsh 109/head
Timo Heister [Sat, 10 Nov 2018 00:57:19 +0000 (17:57 -0700)]
fix gmsh

5 years agoMerge pull request #108 from tjhei/gmsh
Uwe Köcher [Fri, 9 Nov 2018 17:34:31 +0000 (18:34 +0100)]
Merge pull request #108 from tjhei/gmsh

add Gmsh

5 years agoMerge pull request #107 from tjhei/fix_path_directives
Uwe Köcher [Fri, 9 Nov 2018 17:31:33 +0000 (18:31 +0100)]
Merge pull request #107 from tjhei/fix_path_directives

fix path directive in cmake package

5 years agoadd gmsh 108/head
Timo Heister [Fri, 9 Nov 2018 16:24:47 +0000 (11:24 -0500)]
add gmsh

this is a dependency starting with deal.II 9.0.

This needs to also go on the dealii-9.0 branch

5 years agofix path directive in cmake package 107/head
Timo Heister [Fri, 9 Nov 2018 16:18:34 +0000 (11:18 -0500)]
fix path directive in cmake package

otherwise $PATH will be expanded in the config file

5 years agoUpdate README.md
Uwe Köcher [Thu, 8 Nov 2018 19:00:53 +0000 (20:00 +0100)]
Update README.md


In the beginning the Universe was created. This has made a lot of people very angry and has been widely regarded as a bad move.

Douglas Adams


Typeset in Trocchi and Trocchi Bold Sans Serif.