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https://gitweb.dealii.org/ - dealii.git/log
Wolfgang Bangerth [Mon, 23 Nov 2015 01:42:57 +0000 (19:42 -0600)]
Add a changelog entry.
Wolfgang Bangerth [Mon, 23 Nov 2015 01:24:18 +0000 (19:24 -0600)]
New tests.
Wolfgang Bangerth [Mon, 23 Nov 2015 01:23:44 +0000 (19:23 -0600)]
Adjust test. One part of the existing test simply no longer makes any sense.
Wolfgang Bangerth [Mon, 23 Nov 2015 01:22:04 +0000 (19:22 -0600)]
Augment documentation.
Wolfgang Bangerth [Mon, 23 Nov 2015 01:21:57 +0000 (19:21 -0600)]
Fix an issue with GridGenerator::extract_boundary_mesh().
Order the vertices of the surface mesh in such a way that the coordinate
systems of all cells that make up the surface are either right-handed or
left-handed when viewed from one side of the resulting surface.
David Wells [Fri, 20 Nov 2015 21:39:48 +0000 (16:39 -0500)]
Merge pull request #1890 from tamiko/fix_mpi_detection
CMake: Compatibility fixes for CMake 3.4.0
Matthias Maier [Fri, 20 Nov 2015 19:34:16 +0000 (13:34 -0600)]
CMake: Compatibility fixes for CMake 3.4.0
CMake 3.4.0 no longer exports MPI_<LANGUAGE>_COMPILER as cached variable.
Therefore, we also have to make sure to unset ordinary variables (in
addition to cached variables) for our "retry" pass.
Bruno Turcksin [Thu, 19 Nov 2015 21:11:41 +0000 (15:11 -0600)]
Merge pull request #1800 from Rombur/la_vector
Add LinearAlgebra::Vector derived from ReadWriteVector and VectorSpaceVector
Bruno Turcksin [Thu, 19 Nov 2015 20:59:31 +0000 (14:59 -0600)]
Remove sadd(scalar,Vector) from VectorSpaceVector interface.
Timo Heister [Thu, 19 Nov 2015 13:28:01 +0000 (08:28 -0500)]
Merge pull request #1882 from tjhei/remove_depr_multithreadinfo
remove deprecated MultithreadInfo code
Timo Heister [Thu, 19 Nov 2015 13:12:24 +0000 (08:12 -0500)]
changelog entry
Timo Heister [Wed, 18 Nov 2015 16:44:33 +0000 (11:44 -0500)]
remove deprecated MultithreadInfo code
Wolfgang Bangerth [Thu, 19 Nov 2015 01:53:08 +0000 (20:53 -0500)]
Merge pull request #1884 from barker29/patch-1
Update tria_boundary_lib.cc
barker29 [Wed, 18 Nov 2015 23:49:54 +0000 (15:49 -0800)]
Update tria_boundary_lib.cc
Bug fix to allow CylinderBoundary<2,3>
Bruno Turcksin [Wed, 18 Nov 2015 23:25:01 +0000 (17:25 -0600)]
Fix a typo in a comment.
Timo Heister [Wed, 18 Nov 2015 22:42:49 +0000 (17:42 -0500)]
Merge pull request #1880 from tjhei/rework_expand_instantiation_macros
fix expand_instantiation split logic
Timo Heister [Tue, 17 Nov 2015 21:33:14 +0000 (16:33 -0500)]
fix expand_instantiation split logic
We optionally split instantiations in the generated .inst files based on
two macros SPLIT_INSTANTIATIONS_COUNT and SPLIT_INSTANTIATIONS_INDEX.
Intel 14 generates an error with an invalid % 0 in the old solution,
which happens if _COUNT is undefined. Fix this by defining a macro at
the beginning of the .inst file.
David Wells [Wed, 18 Nov 2015 19:10:20 +0000 (14:10 -0500)]
Merge pull request #1881 from drwells/undo-vector-scalar-add-deprecation
Revert deprecation of Vector::add(scalar).
David Wells [Wed, 18 Nov 2015 19:04:54 +0000 (14:04 -0500)]
Update a deprecation message in changes.h.
These functions are no longer deprecated and should not be marked as
such in the changelog.
David Wells [Wed, 18 Nov 2015 16:52:04 +0000 (11:52 -0500)]
Revert deprecation of Vector::add(scalar).
This commit partially reverts commit
a45f633f0fc797a499559887d2b5d6be6bf1a508 . The un-deprecated functions
were found to be useful an Aspect application, where one subtracted the
mean value from a vector of pressure values.
Bruno Turcksin [Tue, 17 Nov 2015 16:34:39 +0000 (10:34 -0600)]
Merge pull request #1863 from bangerth/document-get_data
Document FiniteElement::get_*_data().
Bruno Turcksin [Tue, 17 Nov 2015 16:06:05 +0000 (10:06 -0600)]
Merge pull request #1878 from Rombur/vertex_iterator
Allow to iterate on vertices when dim = 2 or 3.
Bruno Turcksin [Tue, 17 Nov 2015 15:25:47 +0000 (09:25 -0600)]
Improve operator --
Bruno Turcksin [Tue, 17 Nov 2015 00:30:10 +0000 (18:30 -0600)]
Improve documentation.
Bruno Turcksin [Mon, 16 Nov 2015 17:31:16 +0000 (11:31 -0600)]
Allow to iterate on vertices when dim = 2 or 3.
Timo Heister [Mon, 16 Nov 2015 19:57:13 +0000 (14:57 -0500)]
Merge pull request #1875 from tjhei/quick_test_msg
display friendly quicktest message
Timo Heister [Mon, 16 Nov 2015 13:36:46 +0000 (08:36 -0500)]
display friendly quicktest message
Timo Heister [Mon, 16 Nov 2015 17:51:13 +0000 (12:51 -0500)]
Merge pull request #1873 from tjhei/trilinos_ml_deterministic
make Trilinos ML deterministic
Timo Heister [Mon, 16 Nov 2015 13:32:13 +0000 (08:32 -0500)]
make Trilinos ML deterministic
Trilinos version 12.2 and older initialize a random seed every time the
ML preconditioner is constructed leading to non-deterministic behavior.
Reported in 2011, this has been finally fixed in 12.4 with the new
"initialize random seed" parameter. Yay!
Wolfgang Bangerth [Mon, 16 Nov 2015 14:55:28 +0000 (09:55 -0500)]
Merge pull request #1877 from ESeNonFossiIo/warning
silence warning
David Wells [Mon, 16 Nov 2015 14:54:29 +0000 (09:54 -0500)]
Merge pull request #1864 from bangerth/doc-update-39
Update documentation of FiniteElement::shape_*.
ESeNonFossiIo [Mon, 16 Nov 2015 14:46:43 +0000 (15:46 +0100)]
silence warning
Martin Kronbichler [Mon, 16 Nov 2015 13:58:20 +0000 (14:58 +0100)]
Merge pull request #1874 from tjhei/trilinos_warning
fix trilinos warning
Timo Heister [Mon, 16 Nov 2015 13:36:03 +0000 (08:36 -0500)]
fix trilinos warning
Timo Heister [Sun, 15 Nov 2015 22:11:45 +0000 (17:11 -0500)]
Merge pull request #1872 from bangerth/doc-update-40
Update documentation about sparsity patterns.
Wolfgang Bangerth [Sun, 15 Nov 2015 20:00:01 +0000 (14:00 -0600)]
Update documentation about sparsity patterns.
Timo Heister [Sat, 14 Nov 2015 20:23:57 +0000 (15:23 -0500)]
Merge pull request #1871 from bangerth/work-around-compiler-bug
Work around a bug in gcc 4.6.
Wolfgang Bangerth [Sat, 14 Nov 2015 12:33:07 +0000 (06:33 -0600)]
Work around a bug in gcc 4.6.
Denis Davydov [Fri, 13 Nov 2015 14:11:55 +0000 (15:11 +0100)]
Merge pull request #1868 from jppelteret/fix_precondition_selector
Remove errant line left over from a merge conflict.
Jean-Paul Pelteret [Fri, 13 Nov 2015 14:03:00 +0000 (15:03 +0100)]
Remove errant line left over from a merge conflict.
Wolfgang Bangerth [Fri, 13 Nov 2015 04:15:10 +0000 (23:15 -0500)]
Merge pull request #1867 from drwells/consistent-template-type-names
Consistent template type names
David Wells [Thu, 12 Nov 2015 20:38:08 +0000 (15:38 -0500)]
Prefer PolynomialType to POLY.
David Wells [Thu, 12 Nov 2015 20:28:30 +0000 (15:28 -0500)]
Prefer StreamType to STREAM.
David Wells [Thu, 12 Nov 2015 20:15:05 +0000 (15:15 -0500)]
Prefer PreconditionerType to PRECONDITIONER.
David Wells [Thu, 12 Nov 2015 20:17:18 +0000 (15:17 -0500)]
Fix an astyle indentation issue.
David Wells [Thu, 12 Nov 2015 19:49:29 +0000 (14:49 -0500)]
Prefer SolverType to SOLVER.
David Wells [Thu, 12 Nov 2015 19:45:07 +0000 (14:45 -0500)]
More MATRIX to MatrixType
David Wells [Thu, 12 Nov 2015 19:41:42 +0000 (14:41 -0500)]
More VECTOR -> VectorType
David Wells [Thu, 12 Nov 2015 19:37:50 +0000 (14:37 -0500)]
Prefer BlockVectorType to BLOCK_VECTOR.
David Wells [Sun, 1 Nov 2015 21:46:06 +0000 (16:46 -0500)]
More MATRIX -> MatrixType
David Wells [Sun, 1 Nov 2015 21:01:02 +0000 (16:01 -0500)]
Even more VECTOR -> VectorType
David Wells [Sun, 1 Nov 2015 20:46:13 +0000 (15:46 -0500)]
More VECTOR -> VectorType
David Wells [Sun, 1 Nov 2015 20:22:51 +0000 (15:22 -0500)]
More VECTOR -> VectorType
David Wells [Fri, 30 Oct 2015 15:06:44 +0000 (11:06 -0400)]
Remove trailing blank lines
David Wells [Fri, 30 Oct 2015 15:05:49 +0000 (11:05 -0400)]
More VECTOR -> VectorType
David Wells [Fri, 30 Oct 2015 14:44:50 +0000 (10:44 -0400)]
MATRIX to MatrixType, part 1
David Wells [Fri, 30 Oct 2015 01:34:21 +0000 (21:34 -0400)]
TODO double check Range, Domain, and VECTOR
David Wells [Sat, 24 Oct 2015 22:58:32 +0000 (18:58 -0400)]
VECTOR to VectorType, part 2
David Wells [Sat, 24 Oct 2015 21:12:38 +0000 (17:12 -0400)]
VECTOR to VectorType, part 1
Wolfgang Bangerth [Wed, 11 Nov 2015 21:32:15 +0000 (15:32 -0600)]
Update documentation of FiniteElement::shape_*.
The updated documentation makes it clearer what implementations are
supposed to do if they overload these functions, and what the default
implementation already does. It also fixes incorrect references in
shape_3rd/4th_derivatives().
Wolfgang Bangerth [Wed, 11 Nov 2015 21:23:13 +0000 (15:23 -0600)]
Document FiniteElement::get_*_data().
Wolfgang Bangerth [Wed, 11 Nov 2015 17:40:10 +0000 (12:40 -0500)]
Merge pull request #1859 from luca-heltai/fix-diag-blop
Fixed bug in DiagonalBlockLinearOperator.
Luca Heltai [Wed, 11 Nov 2015 15:52:53 +0000 (16:52 +0100)]
Merge pull request #1860 from bangerth/add-output-object-to-get_data
Add an output data object to FE::get_*_data().
Luca Heltai [Wed, 11 Nov 2015 15:51:24 +0000 (16:51 +0100)]
Merge pull request #1854 from davydden/slepc_unit_tests_initial_space
Slepc unit tests and initial space
Bruno Turcksin [Wed, 11 Nov 2015 14:39:40 +0000 (08:39 -0600)]
Add read/write operations to LinearAlgebra::Vector.
Luca Heltai [Wed, 11 Nov 2015 08:48:51 +0000 (09:48 +0100)]
Fixed indentation.
Luca Heltai [Tue, 10 Nov 2015 23:22:26 +0000 (00:22 +0100)]
Added test for BlockDiagonalOperator bug.
Luca Heltai [Tue, 10 Nov 2015 22:57:13 +0000 (23:57 +0100)]
Merge pull request #1858 from luca-heltai/fix-header
Fixed header.
Luca Heltai [Tue, 10 Nov 2015 22:53:33 +0000 (23:53 +0100)]
Added symmetric tensor to sacado_product_type.
Wolfgang Bangerth [Tue, 10 Nov 2015 21:31:21 +0000 (15:31 -0600)]
Add an output data object to FE::get_*_data().
This allows finite elements to already fill certain output data elements
at the time the get_data() function is called, rather than having to later
figure out whether this is the first time (or not) they get into
fill_fe_*_values().
In its current form, the patch only adds that possibility to passing the
same output object to FiniteElement::get_*_data() that will later be used
when FiniteElement::fill_fe_*_values() will be called. The patch does not
actually implement any of the elements using this -- I will leave this
to a later patch addressing #1824.
Luca Heltai [Tue, 10 Nov 2015 19:33:31 +0000 (20:33 +0100)]
Explicitly specify templates. Not specifying them would make the compiler confused about what version of block_operator to use.
Luca Heltai [Tue, 10 Nov 2015 18:48:57 +0000 (19:48 +0100)]
Fixed header.
Denis Davydov [Tue, 10 Nov 2015 14:30:57 +0000 (15:30 +0100)]
minor renaming of data members and variables in SLEPc solver
Timo Heister [Tue, 10 Nov 2015 14:01:43 +0000 (09:01 -0500)]
Merge pull request #1856 from tjhei/step-40-trilpetsc
decide between Trilinos and PETSc in step-40
Timo Heister [Tue, 10 Nov 2015 13:42:46 +0000 (08:42 -0500)]
decide between Trilinos and PETSc in step-40
based on a patch sent in by Kevin Drzycimski on the mailing list
Luca Heltai [Tue, 10 Nov 2015 12:08:27 +0000 (13:08 +0100)]
Merge pull request #1855 from asartori86/symmetric_tensor_sacado
specialized scalar_product(SymmetricTensor,Tensor) with sacado
alberto sartori [Tue, 10 Nov 2015 12:06:35 +0000 (13:06 +0100)]
specialized scalar_product symmetric*tensor with sacado
Bruno Turcksin [Wed, 28 Oct 2015 20:49:26 +0000 (15:49 -0500)]
Add exceptions when we cannot downcast a VectorSpaceVector object to Vector.
Bruno Turcksin [Tue, 27 Oct 2015 14:19:04 +0000 (09:19 -0500)]
Add LinearAlgebra::Vector derived from LinearAlgebra::ReadWriteVector and LinearAlgebra::VectorSpaceVector.
Denis Davydov [Mon, 9 Nov 2015 16:37:03 +0000 (17:37 +0100)]
a note in changes about SLEPc
Denis Davydov [Mon, 9 Nov 2015 14:41:02 +0000 (15:41 +0100)]
GHEP and SHEP unit tests for SLEPc
Denis Davydov [Mon, 9 Nov 2015 14:39:19 +0000 (15:39 +0100)]
extra options to Lanczos and GD SLEPc solvers
Denis Davydov [Mon, 9 Nov 2015 14:11:15 +0000 (15:11 +0100)]
add set_initial_space() to SLEPc solvers
Martin Kronbichler [Mon, 9 Nov 2015 14:10:39 +0000 (15:10 +0100)]
Merge pull request #1849 from bangerth/update-fill_fe_values-argument-list
Update fill fe values argument list
Wolfgang Bangerth [Mon, 9 Nov 2015 13:59:53 +0000 (22:59 +0900)]
Merge pull request #1847 from adamkosik/master
FETools::project_dg, initialize output to zero
Wolfgang Bangerth [Mon, 9 Nov 2015 01:13:57 +0000 (19:13 -0600)]
Document FiniteElement::fill_fe_*_values() arguments.
Adam Kosik [Mon, 9 Nov 2015 08:18:16 +0000 (09:18 +0100)]
Add entry in news/changes.h.
Martin Kronbichler [Mon, 9 Nov 2015 08:14:56 +0000 (09:14 +0100)]
Merge pull request #1852 from tamiko/do_not_run_step45
Testsuite: Bugfix: Do not run step-45
Martin Kronbichler [Mon, 9 Nov 2015 08:13:48 +0000 (09:13 +0100)]
Merge pull request #1850 from bangerth/add-test
Add test.
Matthias Maier [Mon, 9 Nov 2015 05:21:18 +0000 (23:21 -0600)]
Testsuite: Bugfix: Do not run step-45
step 45 is no longer configuration independent.
Wolfgang Bangerth [Mon, 9 Nov 2015 01:18:22 +0000 (19:18 -0600)]
Add test.
This is a simplified test of FESystems whose base elements are again FESystems.
The test helped me debug a couple of issues, and might be of help again
at a later time. It is a simpler version of fe/shapes_system.
adamkosik [Sun, 8 Nov 2015 22:10:57 +0000 (23:10 +0100)]
FETools::project_dg, initialize output to zero
Denis Davydov [Sun, 8 Nov 2015 09:01:25 +0000 (10:01 +0100)]
Merge pull request #1846 from gassmoeller/fix-real-to-unit-zero-discriminant-again
Fix MappingQ1
Rene Gassmoeller [Sun, 8 Nov 2015 06:06:47 +0000 (00:06 -0600)]
Fix MappingQ1
Wolfgang Bangerth [Sat, 7 Nov 2015 20:59:23 +0000 (14:59 -0600)]
Reshuffle the argument list of FE::fill_fe_*_values().
This brings the argument list in line with the changes made to Mapping in #1204.
In essence, it is all about sorting the list in a halfway reasonable order. No
functional changes.
The patch changes all of the derived finite element classes as well. In some cases
it changes the name of arguments to match a uniform style.
Wolfgang Bangerth [Sun, 8 Nov 2015 01:52:25 +0000 (10:52 +0900)]
Merge pull request #1845 from bangerth/improve-loop-nesting
Improve loop nesting.
Wolfgang Bangerth [Sun, 8 Nov 2015 01:49:53 +0000 (19:49 -0600)]
Make the same kind of changes also to FESystem.
Wolfgang Bangerth [Fri, 6 Nov 2015 22:13:43 +0000 (16:13 -0600)]
Improve loop nesting.
We had a number of places of the form
for (...tight loop...)
if (constant condition)
data update;
The compiler almost certainly can hoist the condition out of the loop,
but why make it this complicated for the compiler. I also find the code
easier to read because the loop is really only over a counting index
and does not carry any particular meaning at a level higher than the
if-statement.
Martin Kronbichler [Sat, 7 Nov 2015 09:52:29 +0000 (10:52 +0100)]
Merge pull request #1841 from bangerth/undo-parallelization
Undo parallelization
Wolfgang Bangerth [Fri, 6 Nov 2015 22:51:08 +0000 (07:51 +0900)]
Merge pull request #1844 from bangerth/eliminate-remote-NUMA-memory-accesses
Address @kronbichler's comments for #1825.
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