]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
8 years agoSpeedup extract_locally_relevant_dofs 1955/head
Martin Kronbichler [Mon, 7 Dec 2015 13:13:50 +0000 (14:13 +0100)]
Speedup extract_locally_relevant_dofs

8 years agoMerge pull request #1950 from tjhei/disable_deallog_console
Martin Kronbichler [Mon, 7 Dec 2015 13:08:31 +0000 (14:08 +0100)]
Merge pull request #1950 from tjhei/disable_deallog_console

Disable deallog console

8 years agoMerge pull request #1953 from drwells/detemplate-distribute-sparsity-pattern
David Wells [Mon, 7 Dec 2015 01:46:54 +0000 (20:46 -0500)]
Merge pull request #1953 from drwells/detemplate-distribute-sparsity-pattern

Detemplate distribute sparsity pattern

8 years agoImprove docs for distribute_sparsity_pattern. 1953/head
David Wells [Mon, 7 Dec 2015 01:30:58 +0000 (20:30 -0500)]
Improve docs for distribute_sparsity_pattern.

8 years agoUpdate tests to not use '<>' unnecessarily.
David Wells [Mon, 7 Dec 2015 00:33:04 +0000 (19:33 -0500)]
Update tests to not use '<>' unnecessarily.

8 years agoDe-template distribute_sparsity_pattern.
David Wells [Sun, 6 Dec 2015 23:58:35 +0000 (18:58 -0500)]
De-template distribute_sparsity_pattern.

Formerly, when deal.II supported several dynamic sparsity patterns,
these functions had a template argument and were instantiated for each
distinct sparsity pattern type. Each function is currently only
instantiated once (for DynamicSparsityPattern and
BlockDynamicSparsityPattern, respectively) so the template is no longer
necessary.

8 years agoMerge pull request #1954 from bangerth/doc-update-41
Timo Heister [Mon, 7 Dec 2015 01:17:09 +0000 (20:17 -0500)]
Merge pull request #1954 from bangerth/doc-update-41

Update documentation.

8 years agoUpdate documentation. 1954/head
Wolfgang Bangerth [Mon, 7 Dec 2015 01:12:02 +0000 (19:12 -0600)]
Update documentation.

We used to use @arg in a few places here we meant @param.

8 years agoMerge pull request #1952 from bangerth/changelog-update
Timo Heister [Mon, 7 Dec 2015 00:31:36 +0000 (19:31 -0500)]
Merge pull request #1952 from bangerth/changelog-update

Add another entry to the changelog.

8 years agoMerge pull request #1941 from drwells/SP-to-SparsityType
Wolfgang Bangerth [Mon, 7 Dec 2015 00:12:15 +0000 (19:12 -0500)]
Merge pull request #1941 from drwells/SP-to-SparsityType

Prefer SparsityType to SP.

8 years agoPrefer SparsityPatternType to SP and SparsityType. 1941/head
David Wells [Sun, 6 Dec 2015 23:40:46 +0000 (18:40 -0500)]
Prefer SparsityPatternType to SP and SparsityType.

This commit uses SparsityPatternType as the template concept name for
things resembling a sparsity pattern. This replaces a few other template
parameters.

8 years agoAdd another entry to the changelog. 1952/head
Wolfgang Bangerth [Sun, 6 Dec 2015 22:54:33 +0000 (16:54 -0600)]
Add another entry to the changelog.

8 years agoextend step-3 documentation 1950/head
Timo Heister [Sun, 6 Dec 2015 18:40:34 +0000 (13:40 -0500)]
extend step-3 documentation

8 years agofix broken tests
Timo Heister [Sun, 6 Dec 2015 18:34:38 +0000 (13:34 -0500)]
fix broken tests

8 years agofix other tests manually
Timo Heister [Sun, 6 Dec 2015 15:51:20 +0000 (10:51 -0500)]
fix other tests manually

8 years agoremove deallog.depth_console(0) call in tests
Timo Heister [Sun, 6 Dec 2015 15:49:22 +0000 (10:49 -0500)]
remove deallog.depth_console(0) call in tests

8 years agochangelog
Timo Heister [Sun, 6 Dec 2015 15:43:16 +0000 (10:43 -0500)]
changelog

8 years agostep-50: switch from deallog to pcout, cleanup
Timo Heister [Sun, 6 Dec 2015 15:38:17 +0000 (10:38 -0500)]
step-50: switch from deallog to pcout, cleanup

8 years agoremove nonsense
Timo Heister [Sun, 6 Dec 2015 15:37:31 +0000 (10:37 -0500)]
remove nonsense

8 years agomove deallog discussion from step4 to step3
Timo Heister [Sun, 6 Dec 2015 15:37:19 +0000 (10:37 -0500)]
move deallog discussion from step4 to step3

Enable it in step3 and move the discussion there to match the output
printed in the results section.

8 years agoremove deallog.depth_console(0) from examples
Timo Heister [Sun, 6 Dec 2015 15:36:14 +0000 (10:36 -0500)]
remove deallog.depth_console(0) from examples

8 years agomake 0 the default for deallog.depth_console
Timo Heister [Sun, 6 Dec 2015 15:34:40 +0000 (10:34 -0500)]
make 0 the default for deallog.depth_console

Disable printing deallog output to the screen by default.

8 years agoMerge pull request #1951 from bangerth/clean-up-changelog
Timo Heister [Sun, 6 Dec 2015 18:31:51 +0000 (13:31 -0500)]
Merge pull request #1951 from bangerth/clean-up-changelog

Clean up a number of changelog entries.

8 years agoDocument a recent change. 1951/head
Wolfgang Bangerth [Sun, 6 Dec 2015 18:01:10 +0000 (12:01 -0600)]
Document a recent change.

8 years agoClean up some changelog entries.
Wolfgang Bangerth [Sun, 6 Dec 2015 17:46:32 +0000 (11:46 -0600)]
Clean up some changelog entries.

8 years agoMerge pull request #1944 from drwells/fix-parameter-handler-dos-files
Timo Heister [Sun, 6 Dec 2015 15:53:46 +0000 (10:53 -0500)]
Merge pull request #1944 from drwells/fix-parameter-handler-dos-files

Fix parameter handler dos files

8 years agoAdd a test for DOS-format parameter files. 1944/head
David Wells [Sun, 6 Dec 2015 01:23:40 +0000 (20:23 -0500)]
Add a test for DOS-format parameter files.

This verifies that issue #1691 was fixed by commit e9244cdffe.

8 years agoModify Utilities::trim to remove all whitespace.
David Wells [Thu, 3 Dec 2015 03:53:08 +0000 (22:53 -0500)]
Modify Utilities::trim to remove all whitespace.

This fixes issue #1691, where a ParameterHandler could not read files
with DOS line endings because Utilities::trim did not discard the '\r'
characters.

8 years agoMerge pull request #1948 from kronbichler/fix_scalability_distributed_tria
Timo Heister [Sat, 5 Dec 2015 12:54:39 +0000 (07:54 -0500)]
Merge pull request #1948 from kronbichler/fix_scalability_distributed_tria

Fix quadratic complexity of p::d::Tria::fill_vertices_with_ghost_neighbors

8 years agoFix quadratic complexity inside p::d::Tria::fill_vertices_with_ghost_neighbors 1948/head
Martin Kronbichler [Sat, 5 Dec 2015 09:41:14 +0000 (10:41 +0100)]
Fix quadratic complexity inside p::d::Tria::fill_vertices_with_ghost_neighbors

8 years agoMerge pull request #1945 from drwells/fix-bzip-check-typo
Matthias Maier [Fri, 4 Dec 2015 13:02:06 +0000 (07:02 -0600)]
Merge pull request #1945 from drwells/fix-bzip-check-typo

Fix a typo in a CMake check.

8 years agoFix a typo in a CMake check. 1945/head
David Wells [Fri, 4 Dec 2015 12:55:47 +0000 (07:55 -0500)]
Fix a typo in a CMake check.

8 years agoMerge pull request #1940 from bangerth/fix-test-5
Timo Heister [Thu, 3 Dec 2015 14:39:20 +0000 (09:39 -0500)]
Merge pull request #1940 from bangerth/fix-test-5

Fix output file.

8 years agoMerge pull request #1939 from tjhei/fix_la_vector_output_test
Wolfgang Bangerth [Thu, 3 Dec 2015 14:30:44 +0000 (08:30 -0600)]
Merge pull request #1939 from tjhei/fix_la_vector_output_test

fix tests/lac/la_vector_output

8 years agoFix output file. 1940/head
Wolfgang Bangerth [Thu, 3 Dec 2015 14:28:39 +0000 (08:28 -0600)]
Fix output file.

8 years agofix tests/lac/la_vector_output 1939/head
Timo Heister [Thu, 3 Dec 2015 14:03:43 +0000 (09:03 -0500)]
fix tests/lac/la_vector_output

ofstream std::string constructor would require c++11

8 years agoMerge pull request #1935 from tjhei/doxygen_fixes
Wolfgang Bangerth [Wed, 2 Dec 2015 17:21:38 +0000 (11:21 -0600)]
Merge pull request #1935 from tjhei/doxygen_fixes

Doxygen fixes

8 years agolatex formula fixes 1935/head
Timo Heister [Wed, 2 Dec 2015 17:15:07 +0000 (12:15 -0500)]
latex formula fixes

8 years agoother doxygen errors
Timo Heister [Wed, 2 Dec 2015 17:10:34 +0000 (12:10 -0500)]
other doxygen errors

8 years agofix markup in step-45
Timo Heister [Wed, 2 Dec 2015 17:09:42 +0000 (12:09 -0500)]
fix markup in step-45

8 years agoMerge pull request #1931 from tjhei/fix_get_curl_on_clang
Wolfgang Bangerth [Mon, 30 Nov 2015 18:10:31 +0000 (12:10 -0600)]
Merge pull request #1931 from tjhei/fix_get_curl_on_clang

fix get_curl on clang broken in #1920

8 years agofix get_curl on clang broken in #1920 1931/head
Timo Heister [Mon, 30 Nov 2015 18:06:11 +0000 (13:06 -0500)]
fix get_curl on clang broken in #1920

8 years agoMerge pull request #1927 from bangerth/fix-test-2
Timo Heister [Mon, 30 Nov 2015 16:33:27 +0000 (11:33 -0500)]
Merge pull request #1927 from bangerth/fix-test-2

Fix wrong reference to variable in test.

8 years agoMerge pull request #1929 from asartori86/fix_doc_vector_tools
Wolfgang Bangerth [Mon, 30 Nov 2015 15:00:23 +0000 (09:00 -0600)]
Merge pull request #1929 from asartori86/fix_doc_vector_tools

fixed doc introduced in #1928

8 years agofixed doc 1929/head
alberto sartori [Mon, 30 Nov 2015 14:36:04 +0000 (15:36 +0100)]
fixed doc

8 years agoFix wrong reference to variable in test. 1927/head
Wolfgang Bangerth [Mon, 30 Nov 2015 13:45:12 +0000 (07:45 -0600)]
Fix wrong reference to variable in test.

8 years agoMerge pull request #1928 from asartori86/fix_doc_vector_tools
Denis Davydov [Mon, 30 Nov 2015 14:19:51 +0000 (15:19 +0100)]
Merge pull request #1928 from asartori86/fix_doc_vector_tools

fixed doc in vector_tools.h

8 years agofixed doc 1928/head
alberto sartori [Mon, 30 Nov 2015 14:18:42 +0000 (15:18 +0100)]
fixed doc

8 years agoMerge pull request #1907 from drwells/DH-to-DoFHandlerType
Wolfgang Bangerth [Mon, 30 Nov 2015 13:03:15 +0000 (07:03 -0600)]
Merge pull request #1907 from drwells/DH-to-DoFHandlerType

DH to DoFHandlerType

8 years agoMerge pull request #1925 from bangerth/document-fe-2
Wolfgang Bangerth [Mon, 30 Nov 2015 13:02:23 +0000 (07:02 -0600)]
Merge pull request #1925 from bangerth/document-fe-2

Finish rewriting the documentation of class FiniteElement.

8 years agoFinish rewriting the documentation of class FiniteElement. 1925/head
Wolfgang Bangerth [Mon, 30 Nov 2015 02:14:49 +0000 (20:14 -0600)]
Finish rewriting the documentation of class FiniteElement.

8 years agoEscape words that also denote namespaces.
Wolfgang Bangerth [Sun, 29 Nov 2015 18:18:20 +0000 (12:18 -0600)]
Escape words that also denote namespaces.

8 years agoMerge pull request #1909 from bangerth/use-signaling-nans
Wolfgang Bangerth [Mon, 30 Nov 2015 12:49:56 +0000 (06:49 -0600)]
Merge pull request #1909 from bangerth/use-signaling-nans

Provide and use signaling nans

8 years agoAdd another test. 1909/head
Wolfgang Bangerth [Sun, 29 Nov 2015 19:27:39 +0000 (13:27 -0600)]
Add another test.

8 years agoAdd tests.
Wolfgang Bangerth [Sat, 28 Nov 2015 21:57:45 +0000 (15:57 -0600)]
Add tests.

8 years agoFix copy constructor of SymmetricTensor.
Wolfgang Bangerth [Sat, 28 Nov 2015 21:57:16 +0000 (15:57 -0600)]
Fix copy constructor of SymmetricTensor.

8 years agoAdd a changelog entry.
Wolfgang Bangerth [Tue, 24 Nov 2015 18:35:37 +0000 (12:35 -0600)]
Add a changelog entry.

8 years agoInitialize mapping and FE output with signaling NaNs.
Wolfgang Bangerth [Tue, 24 Nov 2015 17:15:07 +0000 (11:15 -0600)]
Initialize mapping and FE output with signaling NaNs.

8 years agoMerge pull request #1912 from bangerth/fix-internal-edges
Martin Kronbichler [Mon, 30 Nov 2015 08:45:59 +0000 (09:45 +0100)]
Merge pull request #1912 from bangerth/fix-internal-edges

Make GridGenerator::extract_boundary_mesh() copy manifold ids.

8 years agoAdd a file that contains ways to generate signaling NaNs.
Wolfgang Bangerth [Mon, 23 Nov 2015 19:38:59 +0000 (13:38 -0600)]
Add a file that contains ways to generate signaling NaNs.

8 years agoMerge pull request #1923 from tjhei/fix_symtensor_contract
Wolfgang Bangerth [Sat, 28 Nov 2015 20:44:56 +0000 (14:44 -0600)]
Merge pull request #1923 from tjhei/fix_symtensor_contract

clarify namespace in double_contraction of SymmetricTensor

8 years agoclarify namespace in double_contraction of SymmetricTensor 1923/head
Timo Heister [Sat, 28 Nov 2015 20:40:29 +0000 (15:40 -0500)]
clarify namespace in double_contraction of SymmetricTensor

MSVC stumbled over this.

8 years agoAllow setting manifold ids on interior edges and faces. 1912/head
Wolfgang Bangerth [Wed, 25 Nov 2015 15:14:22 +0000 (09:14 -0600)]
Allow setting manifold ids on interior edges and faces.

8 years agoMerge pull request #1913 from bangerth/document-fe-1
Wolfgang Bangerth [Sat, 28 Nov 2015 19:02:03 +0000 (13:02 -0600)]
Merge pull request #1913 from bangerth/document-fe-1

Provide much more documentation for class FiniteElement and friends.

8 years agoProvide much more documentation for class FiniteElement and friends. 1913/head
Wolfgang Bangerth [Thu, 26 Nov 2015 03:35:55 +0000 (21:35 -0600)]
Provide much more documentation for class FiniteElement and friends.

8 years agoMerge pull request #1918 from tjhei/write_svg_fix
Wolfgang Bangerth [Sat, 28 Nov 2015 13:36:48 +0000 (07:36 -0600)]
Merge pull request #1918 from tjhei/write_svg_fix

avoid Point(true) constructor in write_svg

8 years agoMerge pull request #1919 from tjhei/fix_step_52
Wolfgang Bangerth [Sat, 28 Nov 2015 13:35:43 +0000 (07:35 -0600)]
Merge pull request #1919 from tjhei/fix_step_52

step-52: avoid typename outside template functions

8 years agoMerge pull request #1920 from tjhei/fix_step_48
Wolfgang Bangerth [Sat, 28 Nov 2015 13:34:51 +0000 (07:34 -0600)]
Merge pull request #1920 from tjhei/fix_step_48

MSVC fix for fe_evaluation

8 years agoMSVC fix for fe_evaluation 1920/head
Timo Heister [Sat, 28 Nov 2015 13:30:15 +0000 (08:30 -0500)]
MSVC fix for fe_evaluation

It looks like MSVC struggles with operator? in template parameters unless you wrap them in parenthesis.

8 years agostep-52: avoid typename outside template functions 1919/head
Timo Heister [Sat, 28 Nov 2015 13:17:01 +0000 (08:17 -0500)]
step-52: avoid typename outside template functions

8 years agoavoid Point(true) constructor in write_svg 1918/head
Timo Heister [Sat, 28 Nov 2015 12:59:14 +0000 (07:59 -0500)]
avoid Point(true) constructor in write_svg

Pointd are always initialized to zero anyways and this call confuses MSVC.

8 years agoMerge pull request #1895 from drwells/remove-noquerymode-check
Martin Kronbichler [Fri, 27 Nov 2015 17:05:21 +0000 (18:05 +0100)]
Merge pull request #1895 from drwells/remove-noquerymode-check

Remove the DEAL_II_LIBLAPACK_NOQUERYMODE check.

8 years agoMerge pull request #1916 from kronbichler/master
Timo Heister [Fri, 27 Nov 2015 11:43:00 +0000 (06:43 -0500)]
Merge pull request #1916 from kronbichler/master

Fix documention introduced in #1914

8 years agoFix documention introduced in #1914 1916/head
Martin Kronbichler [Fri, 27 Nov 2015 07:43:08 +0000 (08:43 +0100)]
Fix documention introduced in #1914

8 years agoMerge pull request #1915 from tjhei/msvc_fixes
Wolfgang Bangerth [Fri, 27 Nov 2015 01:56:22 +0000 (19:56 -0600)]
Merge pull request #1915 from tjhei/msvc_fixes

MSVC fixes

8 years agoMerge pull request #1914 from kronbichler/master
Timo Heister [Fri, 27 Nov 2015 01:19:59 +0000 (20:19 -0500)]
Merge pull request #1914 from kronbichler/master

Fix overflow issue with parallel::distributed::Vector

8 years agoMSVC fixes 1915/head
Timo Heister [Thu, 26 Nov 2015 23:55:34 +0000 (18:55 -0500)]
MSVC fixes

8 years agoFix overflow issue with parallel::distributed::Vector 1914/head
Martin Kronbichler [Thu, 26 Nov 2015 15:16:49 +0000 (16:16 +0100)]
Fix overflow issue with parallel::distributed::Vector

8 years agoMerge pull request #1910 from drwells/remove-mgdofhandler-references
David Wells [Tue, 24 Nov 2015 22:38:22 +0000 (17:38 -0500)]
Merge pull request #1910 from drwells/remove-mgdofhandler-references

Remove MGDoFHandler references

8 years agoImprove spacing in a code sample. 1910/head
David Wells [Mon, 23 Nov 2015 00:54:07 +0000 (19:54 -0500)]
Improve spacing in a code sample.

8 years agoUpdate references to the MGDoFHandler class.
David Wells [Mon, 23 Nov 2015 00:49:30 +0000 (19:49 -0500)]
Update references to the MGDoFHandler class.

This class was removed in the 8.0 release. I updated the example to show
how one can get the same result with a DoFHandler (i.e., call
distribute_mg_dofs).

8 years agoMerge pull request #1902 from bangerth/do-some-work-in-get_data
Bruno Turcksin [Tue, 24 Nov 2015 21:17:23 +0000 (15:17 -0600)]
Merge pull request #1902 from bangerth/do-some-work-in-get_data

Do some work in get_data instead of fill_fe_values

8 years agoMerge pull request #1908 from bangerth/fix-cartesian-mapping
Bruno Turcksin [Tue, 24 Nov 2015 21:00:38 +0000 (15:00 -0600)]
Merge pull request #1908 from bangerth/fix-cartesian-mapping

Compute higher order derivative mappings in MappingCartesian.

8 years agoCompute higher order derivative mappings in MappingCartesian. 1908/head
Wolfgang Bangerth [Tue, 24 Nov 2015 17:18:05 +0000 (11:18 -0600)]
Compute higher order derivative mappings in MappingCartesian.

These fields were previously only computed for cells, but not for faces or subfaces.
This happened to work by accident because these fields are initialized by zeros.
But I'm changing this so that they are initialized by signaling NaNs, and so we need
to be explicit about this.

8 years agoImprove indentation. 1907/head
David Wells [Tue, 24 Nov 2015 00:36:46 +0000 (19:36 -0500)]
Improve indentation.

8 years agoPrefer DoFHandlerType to DH.
David Wells [Mon, 23 Nov 2015 00:41:27 +0000 (19:41 -0500)]
Prefer DoFHandlerType to DH.

8 years agoMerge pull request #1906 from bangerth/fix-error-message
Denis Davydov [Tue, 24 Nov 2015 14:40:33 +0000 (15:40 +0100)]
Merge pull request #1906 from bangerth/fix-error-message

Fix error messages.

8 years agoFix error messages. 1906/head
Wolfgang Bangerth [Tue, 24 Nov 2015 14:37:58 +0000 (08:37 -0600)]
Fix error messages.

There was a space  missing in a couple of places, but more importantly we cannot
directly output objects of type types::boundary_id (==char). They need to be cast
to integers to yield something useful.

8 years agoMerge pull request #1904 from bangerth/update-reference
Timo Heister [Tue, 24 Nov 2015 13:39:55 +0000 (08:39 -0500)]
Merge pull request #1904 from bangerth/update-reference

Hallelujah.

8 years agoUpdate a reference. 1904/head
Wolfgang Bangerth [Tue, 24 Nov 2015 12:53:00 +0000 (06:53 -0600)]
Update a reference.

8 years agoMerge pull request #1903 from jppelteret/fix_docs_gridgenerator
Denis Davydov [Tue, 24 Nov 2015 08:37:23 +0000 (09:37 +0100)]
Merge pull request #1903 from jppelteret/fix_docs_gridgenerator

Added note on mesh refinement to GridGenerator::extrude_triangulation

8 years agoAdded note on mesh refinement to GridGenerator::extrude_triangulation 1903/head
Jean-Paul Pelteret [Tue, 24 Nov 2015 07:18:34 +0000 (08:18 +0100)]
Added note on mesh refinement to GridGenerator::extrude_triangulation

Fixes #1887

8 years agoRevert order of loops and if statements. 1902/head
Wolfgang Bangerth [Tue, 24 Nov 2015 00:08:58 +0000 (18:08 -0600)]
Revert order of loops and if statements.

This is in analogy to what was already done in #1821.

8 years agoDo some work already in get_data().
Wolfgang Bangerth [Mon, 23 Nov 2015 19:31:20 +0000 (13:31 -0600)]
Do some work already in get_data().

Do not delay until fill_fe_values(), if something can already be done early on.

8 years agoMerge pull request #1899 from bangerth/use-american-english
David Wells [Mon, 23 Nov 2015 15:11:13 +0000 (10:11 -0500)]
Merge pull request #1899 from bangerth/use-american-english

Use American English spelling of "signaling".

8 years agoUse American English spelling of "signaling". 1899/head
Wolfgang Bangerth [Mon, 23 Nov 2015 15:04:10 +0000 (09:04 -0600)]
Use American English spelling of "signaling".

8 years agoMerge pull request #1898 from bangerth/fix-tests
Martin Kronbichler [Mon, 23 Nov 2015 14:54:38 +0000 (15:54 +0100)]
Merge pull request #1898 from bangerth/fix-tests

Fix tests.

8 years agoFix tests. 1898/head
Wolfgang Bangerth [Mon, 23 Nov 2015 14:49:57 +0000 (08:49 -0600)]
Fix tests.

This adjusts tests for changes introduced when fixing
GridGenerator::extract_boundary_mesh().

8 years agoMerge pull request #1897 from bangerth/fix-comment
Denis Davydov [Mon, 23 Nov 2015 13:28:24 +0000 (14:28 +0100)]
Merge pull request #1897 from bangerth/fix-comment

Fix a comment.

8 years agoFix a comment. 1897/head
Wolfgang Bangerth [Mon, 23 Nov 2015 13:26:48 +0000 (07:26 -0600)]
Fix a comment.


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