]>
https://gitweb.dealii.org/ - dealii.git/log
Timo Heister [Tue, 14 Oct 2014 21:07:29 +0000 (17:07 -0400)]
Allow v=0.0 for ghosted PETSc and Trilinos vectors
Timo Heister [Tue, 14 Oct 2014 20:19:34 +0000 (16:19 -0400)]
Allow v=0.0 for ghosted PETSc and Trilinos vectors
Timo Heister [Tue, 14 Oct 2014 19:53:10 +0000 (15:53 -0400)]
add failing test for ghosted vectors
Wolfgang Bangerth [Tue, 14 Oct 2014 14:59:32 +0000 (09:59 -0500)]
Merge pull request #196 from bangerth/step-52-updates
Step 52 updates
Wolfgang Bangerth [Mon, 13 Oct 2014 23:59:45 +0000 (18:59 -0500)]
Give it a once over.
No functional changes, just updates to documentation and style.
Wolfgang Bangerth [Mon, 13 Oct 2014 23:59:24 +0000 (18:59 -0500)]
Also remove output files.
Wolfgang Bangerth [Mon, 13 Oct 2014 23:59:16 +0000 (18:59 -0500)]
Minor documentation updates.
Wolfgang Bangerth [Fri, 10 Oct 2014 19:11:12 +0000 (14:11 -0500)]
Merge pull request #194 from tjhei/remove_face_it_assert
Remove Assert in CellAccessor::face()
Timo Heister [Fri, 10 Oct 2014 14:44:25 +0000 (10:44 -0400)]
Remove Assert in CellAccessor::face()
The Assert checked that DoFs are distributed before allowing the use of
::face(), which is overly restrictive.
Also see https://groups.google.com/d/topic/dealii/G3Xp-Uv72_M/discussion
Wolfgang Bangerth [Fri, 10 Oct 2014 14:54:42 +0000 (09:54 -0500)]
Merge pull request #191 from tjhei/renumber_dofs_asserts
Check in DoFHandler::renumber_dofs() that DoFs are distributed
Timo Heister [Thu, 9 Oct 2014 14:17:38 +0000 (10:17 -0400)]
Check in DoFHandler::renumber_dofs() that DoFs are distributed
- This adds several Asserts to check that DoFs are distributed
before calling renumber_dofs() for active or level DoFs.
- Note that we now also require that you call distribute_dofs()
before distribute_mg_dofs().
- Updated documentation.
Martin Kronbichler [Fri, 10 Oct 2014 12:13:17 +0000 (14:13 +0200)]
Merge pull request #193 from bangerth/omit-explicit-instantiations
Remove explicit instantiations.
Wolfgang Bangerth [Fri, 10 Oct 2014 12:03:13 +0000 (07:03 -0500)]
Remove explicit instantiations.
Since these functions were moved to the header file, we no longer
need to explicitly instantiate them since every .cc file that uses
them will generate an instantiation where necessary.
Wolfgang Bangerth [Fri, 10 Oct 2014 11:51:39 +0000 (06:51 -0500)]
Merge pull request #192 from vijaysm/vijaysm/tria_objects_release_fix
Making next_free_pair_object and next_free_single_object as inline functions
Vijay Mahadevan [Thu, 9 Oct 2014 16:47:34 +0000 (11:47 -0500)]
Making the next_free_pair_object and next_free_single_object as inline functions.
Also contains a patch from Wolfgang with changes to the instantiation file.
Background: In release mode, GNU-4.8.x (OSX) seem to optimize away the calls when
specializing the template functions and then symbol definitions seem to be different
between debug and optimized modes. This causes undefined linkage for release mode.
References:
[1] https://groups.google.com/forum/#!topic/dealii/c2qjAsuJ7Mc
[2] https://code.google.com/p/dealii/issues/detail?id=137
[3] https://groups.google.com/forum/#!msg/dealii/6RXRR-iac0Y/Tjzwg1rFRMQJ
Bruno Turcksin [Thu, 9 Oct 2014 14:21:08 +0000 (09:21 -0500)]
Merge pull request #190 from tjhei/fix_typo
fix typo in comment
Timo Heister [Thu, 9 Oct 2014 13:34:11 +0000 (09:34 -0400)]
fix typo in comment
Bruno Turcksin [Wed, 8 Oct 2014 14:48:01 +0000 (09:48 -0500)]
Merge pull request #187 from agrayver/petsc_mat_alloc
Preallocation of PETScWrappers::MPI::SparseMatrix with off-diagonal block nonzeros.
Alexander Grayver [Wed, 8 Oct 2014 12:40:45 +0000 (14:40 +0200)]
Merge branch 'petsc_mat_alloc' of https://github.com/agrayver/dealii into petsc_mat_alloc
Alexander Grayver [Fri, 3 Oct 2014 17:57:50 +0000 (19:57 +0200)]
Enable PETScWrappers::MPI::SparseMatrix interface to account for off-diagonal elements during preallocation.
Matthias Maier [Wed, 8 Oct 2014 11:44:52 +0000 (13:44 +0200)]
Merge pull request #188 from andre-massing/massing/fix-mumps-detection-on-ubuntu-14.04
Added additional names for scalapack and blacs related libs on ubuntu 14...
Alexander Grayver [Wed, 8 Oct 2014 09:40:21 +0000 (11:40 +0200)]
Indent files properly.
Andre Massing [Fri, 3 Oct 2014 21:58:25 +0000 (23:58 +0200)]
Added additional names for scalapack and blacs related libs on ubuntu 14.04
Alexander Grayver [Fri, 3 Oct 2014 17:57:50 +0000 (19:57 +0200)]
Enable PETScWrappers::MPI::SparseMatrix interface to account for off-diagonal elements during preallocation.
Wolfgang Bangerth [Wed, 1 Oct 2014 14:23:48 +0000 (09:23 -0500)]
Merge pull request #185 from tamiko/fix_cxx_test
Fix cxx test
Matthias Maier [Wed, 1 Oct 2014 13:10:45 +0000 (15:10 +0200)]
CMake: Bugfix: Also sanitize (cpp) macros in enable_if_links
Matthias Maier [Wed, 1 Oct 2014 13:08:18 +0000 (15:08 +0200)]
CMake: Remove test DEAL_II_HAVE_CXX11_ICCBOOSTSIGNALSBUG_OK
We cannot sanely test for this regression prior to boost setup. And after
boost setup it is incredibly ugly to do so because DEAL_II_WITH_STDCXX11 is
already processed.
Wolfgang Bangerth [Tue, 30 Sep 2014 23:32:14 +0000 (18:32 -0500)]
Merge pull request #153 from bangerth/query-dof-associations
Allow querying whether a DoF is located on a vertex, line, etc.
Wolfgang Bangerth [Wed, 17 Sep 2014 14:42:44 +0000 (09:42 -0500)]
Allow querying whether a DoF is located on a vertex, line, etc.
Wolfgang Bangerth [Tue, 30 Sep 2014 19:58:30 +0000 (14:58 -0500)]
Merge pull request #184 from tamiko/fix_cxx_test
CMake: Only use internal boost header (if available) for regression check
Matthias Maier [Tue, 30 Sep 2014 18:46:11 +0000 (20:46 +0200)]
CMake: Only use internal boost header (if available) for regression check
Fix a regression where a test for an icc regression in
check_01_cxx_features.cmake incorrectly used a generic <boost/signals2/...>
include. Such an include file doesn't have to be available at this early
point in the configuration run. User internal boost headers (if available)
instead - otherwise just test nothing.
Wolfgang Bangerth [Mon, 29 Sep 2014 18:59:48 +0000 (13:59 -0500)]
Merge pull request #177 from bangerth/document-ghosted-vectors
Provide better documentation on ghosted vectors.
Wolfgang Bangerth [Fri, 26 Sep 2014 23:39:29 +0000 (18:39 -0500)]
Provide better documentation on ghosted vectors.
This includes a discussion of what ghosted vectors are and what their
semantics are.
Martin Kronbichler [Mon, 29 Sep 2014 16:13:51 +0000 (18:13 +0200)]
Merge pull request #183 from bangerth/harden-mpi-reductions
Harden mpi reductions
Wolfgang Bangerth [Mon, 29 Sep 2014 15:24:58 +0000 (10:24 -0500)]
Add a bunch of missing tests for Utilities::MPI::max.
Wolfgang Bangerth [Mon, 29 Sep 2014 15:12:57 +0000 (10:12 -0500)]
MPI_Allreduce is apparently unable to accept input and output arguments at the same location.
Fix this by determining when &input=&output and in that case pass MPI_IN_PLACE.
Matthias Maier [Mon, 29 Sep 2014 14:51:55 +0000 (16:51 +0200)]
Merge pull request #181 from bangerth/add-fusion-to-boost
Add fusion to boost
Wolfgang Bangerth [Mon, 29 Sep 2014 14:42:36 +0000 (09:42 -0500)]
Merge pull request #182 from kronbichler/master
Circumvent a bug in Trilinos 11.10
Martin Kronbichler [Mon, 29 Sep 2014 14:35:54 +0000 (16:35 +0200)]
Circumvent a bug in Trilinos 11.10
If we avoid calling GlobalAssemble when copying from an Epetra_FECrsMatrix that uses a
non-local matrix (enabled for Trilinos 11.9 and greater), we do not run into some bad
code in Trilinos causing a segfault. At this point of the code, it is enough if we only
call FillComplete because there should be no communication after all.
Wolfgang Bangerth [Mon, 29 Sep 2014 11:38:20 +0000 (06:38 -0500)]
Add a test to avoid this problem from happening again in the future.
Wolfgang Bangerth [Mon, 29 Sep 2014 11:28:12 +0000 (06:28 -0500)]
Add BOOST.fusion as apparently we need that in boost/math/special_functions/erf.hpp.
Toby D. Young [Sun, 28 Sep 2014 22:03:34 +0000 (00:03 +0200)]
Merge pull request #180 from bangerth/comment-on-spurious-eigenvalues
Comment on spurious eigenvalues
Wolfgang Bangerth [Sun, 28 Sep 2014 21:00:54 +0000 (16:00 -0500)]
Add a changelog entry.
Wolfgang Bangerth [Sun, 28 Sep 2014 18:38:50 +0000 (13:38 -0500)]
Extend discussion about spurious eigenvalues.
Wolfgang Bangerth [Sun, 28 Sep 2014 18:38:02 +0000 (13:38 -0500)]
Rename a couple of variables and extend discussion.
Wolfgang Bangerth [Sun, 28 Sep 2014 18:05:49 +0000 (13:05 -0500)]
Reindent and fix the issues discussed in the original pull request.
Denis Davydov [Tue, 9 Sep 2014 15:15:34 +0000 (17:15 +0200)]
comment on spurious eigenvalues in Step-36
Wolfgang Bangerth [Sun, 28 Sep 2014 15:29:17 +0000 (10:29 -0500)]
Merge pull request #179 from tamiko/cmake_bugfixes
This is a series of small bugfixes for clang and icc configuration:
Matthias Maier [Sun, 28 Sep 2014 12:47:56 +0000 (14:47 +0200)]
Add a configure time check for a bug in icc
icc-14*, icc-15* does not play nicely with enabled -std=c++11 and
boost::signals2, disable C++11 support in this case.
[1] https://software.intel.com/en-us/forums/topic/515966
Matthias Maier [Sun, 28 Sep 2014 13:32:07 +0000 (15:32 +0200)]
CMake: Bugfix: Correctly detect unsupported flags in case of clang
The clang compiler frontend is very conservative in not issuing an error
for unsupported compile flags but that are valid for gcc. Therefore, also
supply "-Werror" for the clang compiler in all 'ENABLE_IF_SUPPORTED' tests.
Matthias Maier [Sun, 28 Sep 2014 13:14:43 +0000 (15:14 +0200)]
CMake: Bugfix: Replace all "-" by "_" for some internal variable name
ENABLE_IF_SUPPORTED incorrectly exported invalid (cpp) macro definitions
containing a dash "-". Fix this by replacing all dashes with underscores
"_".
Wolfgang Bangerth [Sat, 27 Sep 2014 11:38:32 +0000 (06:38 -0500)]
Merge pull request #175 from bangerth/fix-q-vs-dgq
Allow Q(p) and DGQ(r) elements to touch each other in hp::DoFHandlers.
Wolfgang Bangerth [Fri, 26 Sep 2014 15:21:10 +0000 (10:21 -0500)]
Allow Q(p) and DGQ(r) elements to touch each other in hp::DoFHandlers.
The thing is that the FE_DGQ is discontinuous anyway, so there can't be any constraints to begin with.
Matthias Maier [Sat, 27 Sep 2014 11:33:57 +0000 (13:33 +0200)]
Merge pull request #174 from kronbichler/master
Fix bug in TrilinosVector::sadd with MPI
Matthias Maier [Sat, 27 Sep 2014 11:33:19 +0000 (13:33 +0200)]
Merge pull request #176 from bangerth/shuffle-glossary
Shuffle glossary: the ManifoldId entry was in the wrong place.
Matthias Maier [Sat, 27 Sep 2014 11:32:41 +0000 (13:32 +0200)]
Merge pull request #178 from bangerth/shuffle-changelog
Move an entry to the correct place. A couple of minor updates.
Martin Kronbichler [Fri, 26 Sep 2014 09:32:54 +0000 (11:32 +0200)]
Fix bug in TrilinosVector::sadd with MPI
As pointed out by Praveen C on the mailing list, sadd() of the Trilinos vector did
not work properly when combining ghosted with non-ghosted vectors. The test supposed
to check this used two vectors with the same entries, which did not detect that the
wrong vector was scaled.
Wolfgang Bangerth [Fri, 26 Sep 2014 23:45:11 +0000 (18:45 -0500)]
Move an entry to the correct place. A couple of minor updates.
Wolfgang Bangerth [Fri, 26 Sep 2014 22:53:36 +0000 (17:53 -0500)]
Shuffle glossary: the ManifoldId entry was in the wrong place.
Wolfgang Bangerth [Fri, 26 Sep 2014 15:21:12 +0000 (10:21 -0500)]
Merge pull request #173 from bangerth/fix-step-32
Fix step 32
Wolfgang Bangerth [Thu, 25 Sep 2014 22:51:52 +0000 (17:51 -0500)]
Improve documentation of TimerOutput.
Wolfgang Bangerth [Thu, 25 Sep 2014 22:35:58 +0000 (17:35 -0500)]
Fix an oversight in initializing the timer in step-40.
Wolfgang Bangerth [Thu, 25 Sep 2014 22:32:31 +0000 (17:32 -0500)]
Fix an oversight in initializing the timer in step-32.
Wolfgang Bangerth [Thu, 25 Sep 2014 20:20:10 +0000 (15:20 -0500)]
Merge pull request #172 from bangerth/doc-fixes-9
Augment documentation motivated by Martin's post on the mailing list.
Wolfgang Bangerth [Thu, 25 Sep 2014 19:56:28 +0000 (14:56 -0500)]
Augment documentation motivated by Martin's post on the mailing list.
Wolfgang Bangerth [Wed, 24 Sep 2014 12:47:53 +0000 (07:47 -0500)]
Merge pull request #171 from tamiko/workaround_for_ibm
Workaround for IBM compiler in data_out_base.cc
Matthias Maier [Wed, 24 Sep 2014 11:28:22 +0000 (13:28 +0200)]
Workaround for IBM compiler in data_out_base.cc
This is a workaround for the IBM XL compiler as suggested by Kevin
Drzycimski on the mailing list.
Guido Kanschat [Tue, 23 Sep 2014 12:29:58 +0000 (14:29 +0200)]
Merge pull request #160 from bangerth/doc-fixes-7
Update documentation in a couple of places.
Martin Kronbichler [Tue, 23 Sep 2014 06:23:33 +0000 (08:23 +0200)]
Merge pull request #170 from bangerth/fix-formula
Patch suggested by Xinzeng Feng <xf39@cornell.edu>: Fix a mistake in a code example.
Wolfgang Bangerth [Tue, 23 Sep 2014 02:19:31 +0000 (21:19 -0500)]
Patch suggested by Xinzeng Feng <xf39@cornell.edu>: Fix a mistake in a code example.
Matthias Maier [Mon, 22 Sep 2014 15:58:44 +0000 (17:58 +0200)]
Merge pull request #169 from kronbichler/master
Remove stray Id tag from svn from all headers
Martin Kronbichler [Mon, 22 Sep 2014 15:44:57 +0000 (17:44 +0200)]
Remove stray Id tag from svn from all headers
Bruno Turcksin [Mon, 22 Sep 2014 15:24:14 +0000 (10:24 -0500)]
Merge pull request #168 from kronbichler/master
Fix TrilinosWrappers::SparseMatrix::add(factor, other_matrix).
Wolfgang Bangerth [Mon, 22 Sep 2014 15:21:03 +0000 (10:21 -0500)]
Convert two more places where we use <code>...</code>.
Martin Kronbichler [Mon, 22 Sep 2014 11:56:48 +0000 (13:56 +0200)]
Fix TrilinosWrappers::SparseMatrix::add(factor, other_matrix).
Wolfgang Bangerth [Sun, 21 Sep 2014 23:55:31 +0000 (18:55 -0500)]
Merge pull request #154 from luca-heltai/mappingq_manifold
Made MappingQ aware of Manifold
Wolfgang Bangerth [Sun, 21 Sep 2014 15:46:04 +0000 (10:46 -0500)]
Reindent all short comments to standard length.
Wolfgang Bangerth [Sat, 20 Sep 2014 12:29:17 +0000 (07:29 -0500)]
Remove uses of <tt>...</tt> in a number of places in favor of more
appropriate markups.
Wolfgang Bangerth [Thu, 18 Sep 2014 19:25:52 +0000 (14:25 -0500)]
Update documentation in a couple of places.
Guido Kanschat [Sun, 21 Sep 2014 14:04:25 +0000 (16:04 +0200)]
Merge pull request #164 from bangerth/doc-fixes-8
Updates to the documentation of the quadrature formulas.
Luca Heltai [Mon, 25 Aug 2014 09:32:54 +0000 (11:32 +0200)]
Made MappingQ compatible with Manifold.
Wolfgang Bangerth [Sat, 20 Sep 2014 11:47:05 +0000 (06:47 -0500)]
Adjust based on Guido's feedback.
Guido Kanschat [Sat, 20 Sep 2014 08:28:01 +0000 (10:28 +0200)]
Merge pull request #165 from dakshinai/test_schur_matrix
Add tests for class SchurMatrix
dakshinai [Fri, 19 Sep 2014 23:40:55 +0000 (18:40 -0500)]
Test lac/SchurMatrix; Indented
dakshinai [Fri, 19 Sep 2014 21:40:53 +0000 (16:40 -0500)]
Test lac/SchurMatrix
Wolfgang Bangerth [Fri, 19 Sep 2014 20:34:45 +0000 (15:34 -0500)]
Updates to various places of the documentation.
Wolfgang Bangerth [Fri, 19 Sep 2014 15:48:35 +0000 (10:48 -0500)]
Merge pull request #162 from bangerth/remove-unnecessary-include
Remove unnecessary include
Wolfgang Bangerth [Fri, 19 Sep 2014 11:53:45 +0000 (06:53 -0500)]
Remove unnecessary #include.
Timo Heister [Fri, 19 Sep 2014 13:53:55 +0000 (09:53 -0400)]
Merge pull request #161 from bangerth/private-protected-cleanup
Move declarations in DoFHandler from protected to private.
DoFHandler still had some of its member variables and functions in a protected
section from back when we still had MGDoFHandler derive from it in a meaningful
way. This is now no longer necessary, so remove the protected section and instead
sort things in some sort of natural way into the private section.
Wolfgang Bangerth [Thu, 18 Sep 2014 19:53:33 +0000 (14:53 -0500)]
Move declarations in DoFHandler from protected to private.
DoFHandler still had some of its member variables and functions in a protected
section from back when we still had MGDoFHandler derive from it in a meaningful
way. This is now no longer necessary, so remove the protected section and instead
sort things in some sort of natural way into the private section.
Timo Heister [Thu, 18 Sep 2014 19:25:08 +0000 (15:25 -0400)]
Merge pull request #156 from bangerth/clarify-docs
Clarify documentation and verify what I say by adding tests. This documents has_active_dofs() in parallel.
Wolfgang Bangerth [Thu, 18 Sep 2014 11:20:48 +0000 (06:20 -0500)]
Merge pull request #157 from bangerth/add-task-joinable
Add Threads::Task::joinable()
Wolfgang Bangerth [Thu, 18 Sep 2014 02:19:59 +0000 (21:19 -0500)]
Add test.
Wolfgang Bangerth [Thu, 18 Sep 2014 02:16:55 +0000 (21:16 -0500)]
Add Threads::Task::joinable().
The function verifies that one can call Threads::Task::join() in the
same way as one can do with std::thread::joinable() in C++11.
Luca Heltai [Thu, 18 Sep 2014 10:24:44 +0000 (12:24 +0200)]
Merge pull request #159 from kronbichler/master
Fix compilation of #146 without MPI. This closes #158.
Martin Kronbichler [Thu, 18 Sep 2014 08:29:00 +0000 (10:29 +0200)]
Fix compilation of #146 without MPI
Wolfgang Bangerth [Thu, 18 Sep 2014 00:36:11 +0000 (19:36 -0500)]
Clarify documentation and verify what I say by adding tests.
Wolfgang Bangerth [Wed, 17 Sep 2014 19:49:13 +0000 (14:49 -0500)]
Merge pull request #155 from koecher/PR-Update-Step-20
Updated Documentation for step 20.
Timo Heister [Wed, 17 Sep 2014 18:51:08 +0000 (14:51 -0400)]
Merge pull request #152 from bangerth/cleanups
Minor cleanups. Make the FiniteElement::clone() function public, as it is of
general use. Also: Move several member variables from private to protected
as these are generally variables that derived classes are supposed to
initialize; this allows to remove rather random friend declarations for
these derived classes.
Wolfgang Bangerth [Wed, 17 Sep 2014 13:41:06 +0000 (08:41 -0500)]
Minor cleanups.
Specifically: Make the FiniteElement::clone() function public, as it is of
general use. Also: Move several member variables from private to protected
as these are generally variables that derived classes are supposed to
initialize; this allows to remove rather random friend declarations for
these derived classes.
In the beginning the Universe was created. This has made a lot of
people very angry and has been widely regarded as a bad move.
Douglas Adams
Typeset in
Trocchi and Trocchi Bold Sans Serif.