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https://gitweb.dealii.org/ - dealii.git/log
Wolfgang Bangerth [Fri, 8 Jan 2016 17:22:40 +0000 (11:22 -0600)]
Comment on a couple of things brought up in review.
Wolfgang Bangerth [Thu, 7 Jan 2016 23:10:55 +0000 (17:10 -0600)]
Minor stylistic changes.
Wolfgang Bangerth [Thu, 7 Jan 2016 23:10:02 +0000 (17:10 -0600)]
Add some more material to the introduction of step-18.
Timo Heister [Thu, 7 Jan 2016 15:22:56 +0000 (10:22 -0500)]
Merge pull request #2017 from kronbichler/master
Parallel adaptive multigrid for parallel::distributed::Vector
Martin Kronbichler [Thu, 7 Jan 2016 12:28:16 +0000 (13:28 +0100)]
Add instantiations
Martin Kronbichler [Wed, 6 Jan 2016 20:18:35 +0000 (21:18 +0100)]
Fix 64 bit bug
Martin Kronbichler [Wed, 6 Jan 2016 11:04:56 +0000 (12:04 +0100)]
Fix typo
Martin Kronbichler [Wed, 6 Jan 2016 11:00:09 +0000 (12:00 +0100)]
Implement optimized copy for generic vectors
Martin Kronbichler [Tue, 5 Jan 2016 17:44:41 +0000 (18:44 +0100)]
Augment documentation
Martin Kronbichler [Thu, 24 Dec 2015 21:51:21 +0000 (22:51 +0100)]
Mention change
Martin Kronbichler [Thu, 24 Dec 2015 21:46:36 +0000 (22:46 +0100)]
Test for parallel adaptive multigrid with matrix-free.
Martin Kronbichler [Wed, 23 Dec 2015 22:08:59 +0000 (23:08 +0100)]
Implement parallel MGTransferPrebuilt for parallel::distributed::Vector
This commit includes a refactoring of MGTransferPrebuilt into a base class
MGLevelGlobalTransfer that contains the copy operation between the multigrid
hierarchy and the global degrees of freedom, including a specialization for
parallel::distributed::Vector that takes care of the particular behavior in
this vector type. It also allows us to use optimized access in terms of local
MPI indices.
Matthias Maier [Wed, 6 Jan 2016 17:38:18 +0000 (11:38 -0600)]
Merge pull request #2037 from bangerth/hook-in-code-gallery-3
Hook in code gallery 3
Wolfgang Bangerth [Wed, 6 Jan 2016 17:07:12 +0000 (11:07 -0600)]
Build and track a page that lists all code gallery programs.
Wolfgang Bangerth [Wed, 6 Jan 2016 16:00:56 +0000 (10:00 -0600)]
Deal with ```...``` markdown commands.
doxygen doesn't appear to understand them, so replace them by the
doxygen equivalent.
Wolfgang Bangerth [Wed, 6 Jan 2016 15:19:56 +0000 (09:19 -0600)]
Sort markdown files first.
This allows bringing any readme.md or similar files to the top.
Wolfgang Bangerth [Wed, 6 Jan 2016 14:31:30 +0000 (08:31 -0600)]
Shorten text.
Wolfgang Bangerth [Wed, 6 Jan 2016 14:29:58 +0000 (08:29 -0600)]
Skip header lines only for tutorial programs.
This leaves copyright notices and author information visible for
code gallery programs.
Wolfgang Bangerth [Wed, 6 Jan 2016 14:25:46 +0000 (08:25 -0600)]
More accurately describe dependencies.
Wolfgang Bangerth [Wed, 6 Jan 2016 13:40:03 +0000 (07:40 -0600)]
Copy annotated versions of .md and .cc files into the page.
Also provide links to them at the top.
Wolfgang Bangerth [Wed, 6 Jan 2016 13:17:59 +0000 (07:17 -0600)]
Do not create the heading in program2doxygen.
Instead create it where we call it.
Matthias Maier [Wed, 6 Jan 2016 12:54:55 +0000 (06:54 -0600)]
Merge pull request #2034 from jppelteret/adjust_lin_ops_tests
Minor adjustments to some linear operator tests
Wolfgang Bangerth [Fri, 1 Jan 2016 22:12:20 +0000 (16:12 -0600)]
Create a gallery of pictures at the top of the page.
Timo Heister [Tue, 5 Jan 2016 21:27:06 +0000 (22:27 +0100)]
Merge pull request #2036 from guidokanschat/arpack_warning
Change the exception type to avoid the compiler warning
Guido Kanschat [Tue, 5 Jan 2016 17:51:43 +0000 (18:51 +0100)]
Change the exception type to avoid the compiler warning
Matthias Maier [Tue, 5 Jan 2016 10:17:58 +0000 (04:17 -0600)]
Merge pull request #2035 from davydden/slepc_rework_fix
add missing DEAL_II_WITH_SLEPC in petsc_solver.h
Denis Davydov [Tue, 5 Jan 2016 06:33:43 +0000 (07:33 +0100)]
add missing DEAL_II_WITH_SLEPC in petsc_solver.h
Wolfgang Bangerth [Thu, 31 Dec 2015 22:50:47 +0000 (16:50 -0600)]
Properly track dependencies, and install copies of the code gallery.
Wolfgang Bangerth [Thu, 31 Dec 2015 22:50:19 +0000 (16:50 -0600)]
Extend the stub to generate a page for each code gallery.
Wolfgang Bangerth [Thu, 31 Dec 2015 04:21:08 +0000 (22:21 -0600)]
Provide the basic building blocks to hook in the code gallery.
In particular, track dependencies and set up a stub for generating doxygen input.
Jean-Paul Pelteret [Mon, 4 Jan 2016 15:16:47 +0000 (16:16 +0100)]
Renamed test to help "categorise" it correctly.
Jean-Paul Pelteret [Mon, 4 Jan 2016 17:10:05 +0000 (18:10 +0100)]
Fixed some tests.
linear_operator_08 failed when deal.II is not built with UMFPACK.
There's now a switch for that.
Martin Kronbichler [Mon, 4 Jan 2016 17:12:58 +0000 (18:12 +0100)]
Merge pull request #1804 from davydden/slepc_rework
Allow usage of PETSc solvers/preconditioners in SLEPc spectral transformation
David Wells [Mon, 4 Jan 2016 14:09:37 +0000 (09:09 -0500)]
Merge pull request #2028 from bangerth/hook-in-code-gallery-2
Generate the legend for the tutorial connection graph automatically.
Wolfgang Bangerth [Fri, 1 Jan 2016 19:30:48 +0000 (13:30 -0600)]
Merge pull request #2031 from kronbichler/cleanup_tests
Only run tests if MPI (and p4est for mg_transfer) is available.
Denis Davydov [Fri, 1 Jan 2016 14:38:57 +0000 (15:38 +0100)]
further initialise()->initialize() and alike
Denis Davydov [Fri, 1 Jan 2016 11:50:19 +0000 (12:50 +0100)]
make sure that inside solve() PETSc preconditioner has a matrix set
Martin Kronbichler [Fri, 1 Jan 2016 09:00:05 +0000 (10:00 +0100)]
Merge pull request #2029 from tamiko/bugfix
Populate Tvmult and Tvmult_add of an inverse_operator correctly
Martin Kronbichler [Fri, 1 Jan 2016 08:53:55 +0000 (09:53 +0100)]
Only run tests if MPI (and p4est for mg_transfer) is available.
Timo Heister [Thu, 31 Dec 2015 22:46:49 +0000 (23:46 +0100)]
Merge pull request #2030 from davydden/step54_input
step-54: move input vtk to a separate folder to avoid its removal by …
Denis Davydov [Thu, 31 Dec 2015 05:53:56 +0000 (06:53 +0100)]
step-54: move input vtk to a separate folder to avoid its removal by make distclean
Matthias Maier [Wed, 30 Dec 2015 17:33:30 +0000 (18:33 +0100)]
break indenting to make astyle happy
Matthias Maier [Wed, 30 Dec 2015 17:30:27 +0000 (18:30 +0100)]
add a changes.h entry
Matthias Maier [Wed, 30 Dec 2015 17:26:48 +0000 (18:26 +0100)]
Add a regression test
Martin Kronbichler [Wed, 30 Dec 2015 17:20:51 +0000 (18:20 +0100)]
Merge pull request #2001 from tjhei/mg_remove_deprecated
remove deprecated stuff in MGConstrainedDoFs
Matthias Maier [Wed, 30 Dec 2015 17:08:37 +0000 (18:08 +0100)]
Bugfix: Populate Tvmult and Tvmult_add of an inverse_operator correctly
Fix a typo in linear_operator.h: The transpose operation function-object
Tvmult was accidentally overwritten by Tvmult_add (and the latter left
uninitialized).
Wolfgang Bangerth [Wed, 30 Dec 2015 16:26:36 +0000 (10:26 -0600)]
Merge pull request #2026 from kronbichler/vector_parallel_layout
Vectorize one loop
Martin Kronbichler [Wed, 30 Dec 2015 13:45:14 +0000 (14:45 +0100)]
Add instantiations
Wolfgang Bangerth [Tue, 29 Dec 2015 23:50:36 +0000 (17:50 -0600)]
Also generate the legend for the tutorial connection graph automatically.
This allows us to show the actual symbols for each kind, rather than having to
describe them in words.
Wolfgang Bangerth [Tue, 29 Dec 2015 21:37:42 +0000 (15:37 -0600)]
De-emphasize connections to the code gallery.
Wolfgang Bangerth [Tue, 29 Dec 2015 21:23:29 +0000 (15:23 -0600)]
Merge pull request #2025 from kronbichler/minor_multigrid_cleanup
Minor multigrid cleanup
Wolfgang Bangerth [Tue, 29 Dec 2015 21:22:02 +0000 (15:22 -0600)]
Merge pull request #2027 from kronbichler/change_minimum_parallel_grainsize
Change minimum parallel grainsize of vector to power of 2
Martin Kronbichler [Tue, 29 Dec 2015 20:16:12 +0000 (21:16 +0100)]
Change minimum parallel grainsize of vector to power of 2
Martin Kronbichler [Tue, 29 Dec 2015 20:12:40 +0000 (21:12 +0100)]
Vectorize one loop
Martin Kronbichler [Tue, 29 Dec 2015 18:59:15 +0000 (19:59 +0100)]
Correct header name
Martin Kronbichler [Tue, 29 Dec 2015 18:58:50 +0000 (19:58 +0100)]
Re-enable deallog output in multigrid tutorials.
Wolfgang Bangerth [Tue, 29 Dec 2015 16:37:24 +0000 (10:37 -0600)]
Merge pull request #2024 from drwells/update-relaxationtype-example
Update the documentation of RelaxationType.
David Wells [Tue, 29 Dec 2015 15:55:11 +0000 (10:55 -0500)]
Update the documentation of RelaxationType.
This commit consistently labels classes that satisfy this concept and
clarifies the description of the concept.
Wolfgang Bangerth [Tue, 29 Dec 2015 15:36:19 +0000 (09:36 -0600)]
Merge pull request #2022 from bangerth/fix-markup
Fix markup of references.
Wolfgang Bangerth [Mon, 28 Dec 2015 22:40:53 +0000 (16:40 -0600)]
Fix markup of references.
doxygen interpreted our bibtex-references as C++ code which led
to funny HTML markup. Fortunately, there is a way to tell
doxygen to interpret the code block as just some piece of text
it will not understand regardless of how hard it tries.
Denis Davydov [Tue, 29 Dec 2015 09:44:19 +0000 (10:44 +0100)]
rename initialise() to initialize() and remove an empty line
Denis Davydov [Thu, 17 Dec 2015 15:58:36 +0000 (16:58 +0100)]
slepc: add an entry in changes.h
Denis Davydov [Thu, 17 Dec 2015 15:50:54 +0000 (16:50 +0100)]
SLEPcWrappers: adjust documentation
Denis Davydov [Tue, 15 Dec 2015 10:33:14 +0000 (11:33 +0100)]
extend SLEPc unit test to check different preconditioners in KrylovSchur solver
Denis Davydov [Tue, 15 Dec 2015 10:32:18 +0000 (11:32 +0100)]
allow creation of PETSc preconditioners without a matrix (Jacobi/BoomerAMG)
Denis Davydov [Tue, 15 Dec 2015 10:20:11 +0000 (11:20 +0100)]
impliment missing set_initial_vector() for SLEPc solvers
Denis Davydov [Sat, 12 Dec 2015 20:08:37 +0000 (21:08 +0100)]
SLEPc unit test which uses PETSc preconditioner and solver inside SLEPc
Denis Davydov [Sat, 12 Dec 2015 20:03:03 +0000 (21:03 +0100)]
rework SLEPc solver classes
(i) initialise underlying SLEPc objects in constructors. This allows to...
(ii) apply all the solver settings immediately without using a cache for parameters
Denis Davydov [Sat, 12 Dec 2015 20:00:08 +0000 (21:00 +0100)]
rework SLEPc spectral transformation
(i) create unerlying SLEPc object in constructor; require MPI_Comm.
(ii) add a function to set PETSc solver
Denis Davydov [Sat, 12 Dec 2015 19:51:22 +0000 (20:51 +0100)]
allow initialisation of PETSc solvers with preconditioners; make SLEPc::Transformation a friend
Denis Davydov [Sat, 12 Dec 2015 19:18:02 +0000 (20:18 +0100)]
allow creation of PETSc preconditioners without a matrix
David Wells [Tue, 29 Dec 2015 00:21:03 +0000 (19:21 -0500)]
Merge pull request #2021 from bangerth/document-mpi-terms
Document some common MPI terms and link to them.
Wolfgang Bangerth [Mon, 28 Dec 2015 21:42:21 +0000 (15:42 -0600)]
Document some common MPI terms and link to them.
Matthias Maier [Mon, 28 Dec 2015 19:24:05 +0000 (13:24 -0600)]
Merge pull request #1962 from tamiko/constraint
Constraints for LinearOperators
Matthias Maier [Mon, 28 Dec 2015 12:05:23 +0000 (13:05 +0100)]
rename test
Matthias Maier [Mon, 28 Dec 2015 11:57:42 +0000 (12:57 +0100)]
Update documentation
Matthias Maier [Mon, 26 Oct 2015 02:40:08 +0000 (21:40 -0500)]
...
Matthias Maier [Sun, 25 Oct 2015 19:14:22 +0000 (14:14 -0500)]
address comments
Matthias Maier [Sat, 24 Oct 2015 17:34:42 +0000 (12:34 -0500)]
Add a news/changes.h entry
Matthias Maier [Sat, 24 Oct 2015 17:31:00 +0000 (12:31 -0500)]
Fix some doxygen issues
Matthias Maier [Sat, 24 Oct 2015 17:27:25 +0000 (12:27 -0500)]
Write a glossary entry on how to use the new facility
Matthias Maier [Sat, 24 Oct 2015 17:27:04 +0000 (12:27 -0500)]
Update test and rename to constraint_linear_operator_01
Matthias Maier [Sat, 24 Oct 2015 17:24:54 +0000 (12:24 -0500)]
Refactor into constraint_linear_operator header file
This commit refactors everything into its own header file and addresses a
number of issues:
- solve (Ct * A C + Id_c) x = Ct (b - Ak)
- make code compile and refactor implementation
- rewrite documentation
ESeNonFossiIo [Fri, 18 Sep 2015 08:44:24 +0000 (10:44 +0200)]
add relates ConstraintMatrix
ESeNonFossiIo [Wed, 9 Sep 2015 11:50:24 +0000 (13:50 +0200)]
vmult_add and Tvmult_add
ESeNonFossiIo [Mon, 7 Sep 2015 15:50:52 +0000 (17:50 +0200)]
documentation
ESeNonFossiIo [Mon, 7 Sep 2015 14:37:55 +0000 (16:37 +0200)]
constraint linear operators
Matthias Maier [Mon, 28 Dec 2015 11:35:13 +0000 (05:35 -0600)]
Merge pull request #2005 from tjhei/operator_and_named_data
remove NamedData and deprecated algorithms::Operator
Martin Kronbichler [Mon, 28 Dec 2015 10:19:37 +0000 (11:19 +0100)]
Merge pull request #2020 from asartori86/fix_doc_constraints
fixed doc in ConstraintMatrix detailed description
alberto sartori [Mon, 28 Dec 2015 09:57:02 +0000 (10:57 +0100)]
fixed doc
Denis Davydov [Sun, 27 Dec 2015 19:27:14 +0000 (20:27 +0100)]
Merge pull request #2019 from bangerth/remove-outdated-references
Remove references to the pre-historic parallel::distributed::DoFHandler.
Wolfgang Bangerth [Sun, 27 Dec 2015 19:18:27 +0000 (13:18 -0600)]
Remove references to the pre-historic parallel::distributed::DoFHandler.
Also augment the documentation of one function.
Wolfgang Bangerth [Sun, 27 Dec 2015 19:10:35 +0000 (13:10 -0600)]
Merge pull request #2016 from bangerth/update-step-17
Update the introduction of step-17.
Wolfgang Bangerth [Sun, 27 Dec 2015 19:09:53 +0000 (13:09 -0600)]
Update based on review comments.
Wolfgang Bangerth [Thu, 24 Dec 2015 15:13:15 +0000 (09:13 -0600)]
Add another paragraph.
Wolfgang Bangerth [Thu, 24 Dec 2015 05:27:01 +0000 (23:27 -0600)]
Update a glossary entry.
Wolfgang Bangerth [Thu, 24 Dec 2015 05:26:48 +0000 (23:26 -0600)]
Update the introduction of step-17.
Martin Kronbichler [Wed, 23 Dec 2015 22:05:35 +0000 (23:05 +0100)]
Merge pull request #2015 from bangerth/more-vector-vector-to-Table
More vector vector to table
Martin Kronbichler [Wed, 23 Dec 2015 22:01:30 +0000 (23:01 +0100)]
Merge pull request #2014 from bangerth/remove-unused-classes
Remove InternalData classes that are unused and apparently have been for a while
Martin Kronbichler [Wed, 23 Dec 2015 22:00:59 +0000 (23:00 +0100)]
Merge pull request #2013 from bangerth/convert-vector-of-vector-to-Table2-2
Convert vector of vector to Table<2>
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