]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
8 years agosilence boost warnings in step-53 2162/head
Timo Heister [Thu, 11 Feb 2016 13:33:58 +0000 (08:33 -0500)]
silence boost warnings in step-53

deprecated warning about boost_trait_def.hpp when using boost 1.60

8 years agoMerge pull request #2160 from tjhei/8_4_fix_req_version
Martin Kronbichler [Thu, 11 Feb 2016 13:28:25 +0000 (14:28 +0100)]
Merge pull request #2160 from tjhei/8_4_fix_req_version

[8.4] fix required version

8 years agofix required version 2160/head
Timo Heister [Thu, 11 Feb 2016 13:25:56 +0000 (08:25 -0500)]
fix required version

8 years agoMerge pull request #2159 from tjhei/8_4_pr2158
Martin Kronbichler [Thu, 11 Feb 2016 13:18:46 +0000 (14:18 +0100)]
Merge pull request #2159 from tjhei/8_4_pr2158

[8.4] take over #2158

8 years agoMerge pull request #2157 from tjhei/8_4_remove_steps
Martin Kronbichler [Thu, 11 Feb 2016 13:18:32 +0000 (14:18 +0100)]
Merge pull request #2157 from tjhei/8_4_remove_steps

[8.4] remove steps

8 years agofix warning 2159/head
Timo Heister [Thu, 11 Feb 2016 13:16:23 +0000 (08:16 -0500)]
fix warning

(unused parameter)

8 years agoremoved unfinished steps (release tasks step 8). 2157/head
Timo Heister [Thu, 11 Feb 2016 13:08:11 +0000 (08:08 -0500)]
removed unfinished steps (release tasks step 8).

8 years agoupdate AUTHORS
Timo Heister [Thu, 11 Feb 2016 12:39:07 +0000 (07:39 -0500)]
update AUTHORS

8 years agoupdate VERSION
Timo Heister [Thu, 11 Feb 2016 12:09:59 +0000 (07:09 -0500)]
update VERSION

8 years agoMerge pull request #2150 from tjhei/changes_before_84_branch
Timo Heister [Thu, 11 Feb 2016 12:08:36 +0000 (07:08 -0500)]
Merge pull request #2150 from tjhei/changes_before_84_branch

update changes and news for release

8 years agoupdate changes and news for release 2150/head
Timo Heister [Tue, 9 Feb 2016 15:04:00 +0000 (10:04 -0500)]
update changes and news for release

8 years agoMerge pull request #2152 from tjhei/disable_compiler_warnings
Timo Heister [Thu, 11 Feb 2016 12:04:43 +0000 (07:04 -0500)]
Merge pull request #2152 from tjhei/disable_compiler_warnings

disable gcc warnings

8 years agodisable gcc warning 2152/head
Timo Heister [Wed, 10 Feb 2016 18:09:04 +0000 (13:09 -0500)]
disable gcc warning

In file included from /usr/include/c++/4.8/cassert:43:0,
                 from /ssd/libs-
candi/boost_1_60_0/include/boost/property_tree/detail/json_parser/narrow_encoding.hpp:6,
                 from /ssd/libs-
candi/boost_1_60_0/include/boost/property_tree/detail/json_parser/read.hpp:14,
                 from /ssd/libs-
candi/boost_1_60_0/include/boost/property_tree/json_parser.hpp:16,
                 from /ssd/deal-git/source/base/parameter_handler.cc:26:
/ssd/libs-
candi/boost_1_60_0/include/boost/property_tree/detail/json_parser/narrow_encoding.hpp:
In member function ‘char
boost::property_tree::json_parser::detail::utf8_utf8_encoding::to_internal_trivial(char)
const’:
/ssd/libs-
candi/boost_1_60_0/include/boost/property_tree/detail/json_parser/narrow_encoding.hpp:71:25:
warning: comparison is always true due to limited range of data type
[-Wtype-limits]
             assert(c <= 0x7f);

8 years agoMerge pull request #2153 from tjhei/update_trilinos_version
Wolfgang Bangerth [Wed, 10 Feb 2016 18:29:23 +0000 (12:29 -0600)]
Merge pull request #2153 from tjhei/update_trilinos_version

update known good trilinos version

8 years agoupdate known good trilinos version 2153/head
Timo Heister [Wed, 10 Feb 2016 18:11:08 +0000 (13:11 -0500)]
update known good trilinos version

8 years agoMerge pull request #2131 from srobertp/dof_support_patches
Wolfgang Bangerth [Wed, 10 Feb 2016 18:01:12 +0000 (12:01 -0600)]
Merge pull request #2131 from srobertp/dof_support_patches

add the get_dof_to_support_patch_map() function

8 years agoMerge pull request #2149 from asartori86/rand_function
Wolfgang Bangerth [Wed, 10 Feb 2016 17:58:00 +0000 (11:58 -0600)]
Merge pull request #2149 from asartori86/rand_function

added rand function to FunctionParser

8 years agoadded rand and rand_seed functions to FunctionParser 2149/head
alberto sartori [Tue, 9 Feb 2016 11:58:47 +0000 (12:58 +0100)]
added rand and rand_seed functions to FunctionParser

8 years agorun indent and add comments to describe test 2131/head
Spencer Patty [Wed, 10 Feb 2016 16:53:21 +0000 (10:53 -0600)]
run indent and add comments to describe test

8 years agoadd test of FE_Q<dim>(2) with dof_to_support_patch_map
Spencer Patty [Wed, 10 Feb 2016 16:47:18 +0000 (10:47 -0600)]
add test of FE_Q<dim>(2) with dof_to_support_patch_map

8 years agoMerge pull request #2151 from drwells/matrix-free-broken-link
Wolfgang Bangerth [Tue, 9 Feb 2016 18:57:04 +0000 (12:57 -0600)]
Merge pull request #2151 from drwells/matrix-free-broken-link

Join a link that was broken over two lines.

8 years agoJoin a link that was broken over two lines. 2151/head
David Wells [Tue, 9 Feb 2016 18:50:27 +0000 (13:50 -0500)]
Join a link that was broken over two lines.

This makes the link clickable.

8 years agochange template parameter to DoFHandlerType and make various changes as recommended...
Spencer Patty [Tue, 9 Feb 2016 17:59:43 +0000 (11:59 -0600)]
change template parameter to DoFHandlerType and make various changes as recommended in pull request

8 years agoMerge pull request #2144 from tjhei/wrapcomments
Wolfgang Bangerth [Tue, 9 Feb 2016 15:12:51 +0000 (09:12 -0600)]
Merge pull request #2144 from tjhei/wrapcomments

Wrapcomments

8 years agoMerge pull request #2148 from tjhei/scary_mpi_fixes
Martin Kronbichler [Mon, 8 Feb 2016 14:37:56 +0000 (15:37 +0100)]
Merge pull request #2148 from tjhei/scary_mpi_fixes

fix several scary MPI bugs

8 years agofix several scary MPI bugs 2148/head
Timo Heister [Mon, 8 Feb 2016 14:20:18 +0000 (09:20 -0500)]
fix several scary MPI bugs

I am surprised the code in question used to work at all because we are just
overwriting random memory. I detected those using clang's argument type
warnings and extensible clang type annotation within MPICH.

8 years agoMerge pull request #2147 from kronbichler/master
Martin Kronbichler [Mon, 8 Feb 2016 13:26:40 +0000 (14:26 +0100)]
Merge pull request #2147 from kronbichler/master

Avoid C++11-isms in tests

8 years agoAvoid C++11-isms in tests 2147/head
Martin Kronbichler [Mon, 8 Feb 2016 10:37:01 +0000 (11:37 +0100)]
Avoid C++11-isms in tests

8 years agoMerge pull request #2146 from tjhei/minor_doc_update
David Wells [Sun, 7 Feb 2016 17:38:48 +0000 (12:38 -0500)]
Merge pull request #2146 from tjhei/minor_doc_update

minor rewording

8 years agominor rewording 2146/head
Timo Heister [Sun, 7 Feb 2016 14:37:36 +0000 (09:37 -0500)]
minor rewording

8 years agorun wrapcomments 2144/head
Timo Heister [Sun, 7 Feb 2016 01:35:23 +0000 (20:35 -0500)]
run wrapcomments

this sadly kills some of the manual indentation of @param and other
commands

8 years agoMerge pull request #2145 from tjhei/update_copyright_years
Matthias Maier [Sun, 7 Feb 2016 02:12:30 +0000 (20:12 -0600)]
Merge pull request #2145 from tjhei/update_copyright_years

update copyright years

8 years agoMerge pull request #2143 from tjhei/documentation_updates
Matthias Maier [Sun, 7 Feb 2016 02:06:29 +0000 (20:06 -0600)]
Merge pull request #2143 from tjhei/documentation_updates

Documentation updates

8 years agoupdate copyright years 2145/head
Timo Heister [Sun, 7 Feb 2016 01:42:28 +0000 (20:42 -0500)]
update copyright years

8 years agofix astyle 2143/head
Timo Heister [Sun, 7 Feb 2016 01:33:22 +0000 (20:33 -0500)]
fix astyle

8 years agowrapcomments.py: numbered list support
Timo Heister [Sun, 7 Feb 2016 00:47:56 +0000 (19:47 -0500)]
wrapcomments.py: numbered list support

8 years agoupdate update_copyright script
Timo Heister [Sun, 7 Feb 2016 00:21:36 +0000 (19:21 -0500)]
update update_copyright script

-i is only valid if you process a file

8 years agofix block formulas
Timo Heister [Sat, 6 Feb 2016 23:59:42 +0000 (18:59 -0500)]
fix block formulas

8 years agodoxygen doesn't like numbered lists
Timo Heister [Sat, 6 Feb 2016 23:48:03 +0000 (18:48 -0500)]
doxygen doesn't like numbered lists

8 years agomore manual formatting
Timo Heister [Sat, 6 Feb 2016 23:47:33 +0000 (18:47 -0500)]
more manual formatting

8 years agoimprove wrapcomments.py
Timo Heister [Sat, 6 Feb 2016 23:33:21 +0000 (18:33 -0500)]
improve wrapcomments.py

8 years agomanual formatting fixes for wrapcomments.py
Timo Heister [Sat, 6 Feb 2016 22:40:54 +0000 (17:40 -0500)]
manual formatting fixes for wrapcomments.py

8 years agoformatting: release step 0b
Timo Heister [Sat, 6 Feb 2016 22:19:54 +0000 (17:19 -0500)]
formatting: release step 0b

8 years agovarious documentation fixes
Timo Heister [Sat, 6 Feb 2016 21:49:01 +0000 (16:49 -0500)]
various documentation fixes

8 years agoMerge pull request #2142 from tjhei/msvc_bigobj_fix
Wolfgang Bangerth [Sat, 6 Feb 2016 03:03:51 +0000 (21:03 -0600)]
Merge pull request #2142 from tjhei/msvc_bigobj_fix

fix MSVC compilation by adding /bigobj

8 years agofix MSVC compilation by adding /bigobj 2142/head
Timo Heister [Sat, 6 Feb 2016 02:46:38 +0000 (21:46 -0500)]
fix MSVC compilation by adding /bigobj

this fixes "fatal error C1128: number of sections exceeded object file format limit"

8 years agorun indent again on changes
Spencer Patty [Fri, 5 Feb 2016 18:49:26 +0000 (12:49 -0600)]
run indent again on changes

8 years agoMerge pull request #2100 from drwells/remove-whitespace-in-get_fe_by_name
Wolfgang Bangerth [Fri, 5 Feb 2016 18:21:45 +0000 (12:21 -0600)]
Merge pull request #2100 from drwells/remove-whitespace-in-get_fe_by_name

Remove whitespace in get fe by name

8 years agoMerge pull request #2140 from tjhei/fix_tests2
Bruno Turcksin [Fri, 5 Feb 2016 16:57:02 +0000 (11:57 -0500)]
Merge pull request #2140 from tjhei/fix_tests2

fix tests without cxx11

8 years agofix tests without cxx11 2140/head
Timo Heister [Fri, 5 Feb 2016 16:42:13 +0000 (11:42 -0500)]
fix tests without cxx11

8 years agoMerge pull request #2139 from tjhei/metis_test_output
Matthias Maier [Fri, 5 Feb 2016 15:25:30 +0000 (09:25 -0600)]
Merge pull request #2139 from tjhei/metis_test_output

fix metis tests

8 years agofix metis tests 2139/head
Timo Heister [Fri, 5 Feb 2016 14:53:41 +0000 (09:53 -0500)]
fix metis tests

On my machine with 64bit ints and 32bit metis I am getting the 32bit results
and so the tests fail. Fix this by always comparing against all possible
outputs. Also include additional output for metis_04.

8 years agoMerge pull request #2138 from tjhei/metis_user_include
Martin Kronbichler [Fri, 5 Feb 2016 14:49:47 +0000 (15:49 +0100)]
Merge pull request #2138 from tjhei/metis_user_include

add metis include dir to USER_INCLUDE_DIRS

8 years agoadd metis include dir to USER_INCLUDE_DIRS 2138/head
Timo Heister [Fri, 5 Feb 2016 14:30:16 +0000 (09:30 -0500)]
add metis include dir to USER_INCLUDE_DIRS

otherwise tests/metis/metis_01a fails with "fatal error: 'metis.h' file not found"

8 years agoMerge pull request #2137 from tjhei/fix_tests
Timo Heister [Fri, 5 Feb 2016 14:26:59 +0000 (09:26 -0500)]
Merge pull request #2137 from tjhei/fix_tests

fix several tests

8 years agofix several tests 2137/head
Timo Heister [Fri, 5 Feb 2016 13:02:50 +0000 (08:02 -0500)]
fix several tests

8 years agoMerge pull request #2136 from tjhei/fix__parallelepiped_test
David Wells [Fri, 5 Feb 2016 12:52:05 +0000 (07:52 -0500)]
Merge pull request #2136 from tjhei/fix__parallelepiped_test

fix tests/grid/grid_parallelepiped_05

8 years agofix tests/grid/grid_parallelepiped_05 2136/head
Timo Heister [Fri, 5 Feb 2016 12:42:09 +0000 (07:42 -0500)]
fix tests/grid/grid_parallelepiped_05

8 years agorerun the indent styling to be back in the proper indentation style
Spencer Patty [Fri, 5 Feb 2016 04:42:10 +0000 (22:42 -0600)]
rerun the indent styling to be back in the proper indentation style

8 years agoadd the user_flag saving and restoring so that dof_handler is truly unchanged (const)
Spencer Patty [Fri, 5 Feb 2016 04:39:30 +0000 (22:39 -0600)]
add the user_flag saving and restoring so that dof_handler is truly unchanged (const)

8 years agomake various comment and naming changes based on discussion in pull request
Spencer Patty [Fri, 5 Feb 2016 04:13:42 +0000 (22:13 -0600)]
make various comment and naming changes based on discussion in pull request

8 years agoMerge pull request #2134 from tjhei/boost_blacklist2
Matthias Maier [Fri, 5 Feb 2016 04:11:32 +0000 (22:11 -0600)]
Merge pull request #2134 from tjhei/boost_blacklist2

Boost blacklist2

8 years agoAdd some spaces in the get_fe_by_name test. 2100/head
David Wells [Fri, 22 Jan 2016 18:16:41 +0000 (13:16 -0500)]
Add some spaces in the get_fe_by_name test.

8 years agoLet FE names have spaces between words.
David Wells [Fri, 22 Jan 2016 16:38:46 +0000 (11:38 -0500)]
Let FE names have spaces between words.

Previously, things like

    FESystem[FE_Q(1) - FE_Q(2)]

caused parsing errors due to the spaces around the '-'. The new behavior is to
delete space that is not surrounded by 'word' characters (things that match the
regular expression [A-Za-z0-9_]) before parsing the name.

8 years agoMerge pull request #2135 from tjhei/fix_compilation_grid_gen
David Wells [Fri, 5 Feb 2016 03:30:34 +0000 (22:30 -0500)]
Merge pull request #2135 from tjhei/fix_compilation_grid_gen

fix compilation errors

8 years ago applied ./contrib/utilities/indent to changes in grid_tools.h and grid_tools.cc
Spencer Patty [Fri, 5 Feb 2016 03:28:21 +0000 (21:28 -0600)]
 applied ./contrib/utilities/indent to changes in grid_tools.h and grid_tools.cc

8 years agofix compilation errors 2135/head
Timo Heister [Fri, 5 Feb 2016 03:20:12 +0000 (22:20 -0500)]
fix compilation errors

gcc and intel rightfully want the template parameters spelled out.

8 years agoalso remove Boost_DIR 2134/head
Timo Heister [Fri, 5 Feb 2016 00:04:14 +0000 (19:04 -0500)]
also remove Boost_DIR

8 years agouse correct version variables
Timo Heister [Fri, 5 Feb 2016 00:00:23 +0000 (19:00 -0500)]
use correct version variables

8 years agocleanup boost variables
Timo Heister [Fri, 5 Feb 2016 00:00:05 +0000 (19:00 -0500)]
cleanup boost variables

8 years agoMerge pull request #2132 from tjhei/boost_blacklist
Matthias Maier [Thu, 4 Feb 2016 23:48:52 +0000 (17:48 -0600)]
Merge pull request #2132 from tjhei/boost_blacklist

blacklist boost version 1.58

8 years agomove check to configure_boost 2132/head
Timo Heister [Thu, 4 Feb 2016 23:44:50 +0000 (18:44 -0500)]
move check to configure_boost

8 years agoMerge pull request #1936 from tjhei/hyper_rectangle_codim_fixes
Wolfgang Bangerth [Thu, 4 Feb 2016 23:24:22 +0000 (17:24 -0600)]
Merge pull request #1936 from tjhei/hyper_rectangle_codim_fixes

fix *_hyper_rectangle for codim and add new subdivided_parallelepiped

8 years agoMerge pull request #2133 from tjhei/test_empty_results
Wolfgang Bangerth [Thu, 4 Feb 2016 23:23:33 +0000 (17:23 -0600)]
Merge pull request #2133 from tjhei/test_empty_results

handle empty test output

8 years agohandle empty test output 2133/head
Timo Heister [Thu, 4 Feb 2016 23:17:49 +0000 (18:17 -0500)]
handle empty test output

If the make command to compile a test returns empty output (don't ask me
why that happened on my machine), quote it in the regex to avoid an
error like:
"string sub-command REGEX, mode MATCH needs at least 5 arguments"

8 years agochangelog 1936/head
Timo Heister [Thu, 4 Feb 2016 19:43:18 +0000 (14:43 -0500)]
changelog

8 years agofix *_hyper_rectangle for codim and add new subdivided_parallelepiped
Timo Heister [Wed, 2 Dec 2015 19:53:47 +0000 (14:53 -0500)]
fix *_hyper_rectangle for codim and add new subdivided_parallelepiped

- extend documentation what happens if dim!=spacedim
- add new subdivided_parallelepiped for codim1 and 2
- switch to Point<dim> in *_hyper_rectangle

8 years agoblacklist boost version 1.58
Timo Heister [Thu, 4 Feb 2016 22:40:59 +0000 (17:40 -0500)]
blacklist boost version 1.58

addresses #1591

8 years agoMerge remote-tracking branch 'origin/master' into dof_support_patches
Spencer Patty [Thu, 4 Feb 2016 17:40:39 +0000 (11:40 -0600)]
Merge remote-tracking branch 'origin/master' into dof_support_patches

8 years agoMerge pull request #1934 from Arezou-gh/local-triangulations
Timo Heister [Thu, 4 Feb 2016 15:39:56 +0000 (10:39 -0500)]
Merge pull request #1934 from Arezou-gh/local-triangulations

Add GridTools::build_triangulation_from_patch() and GridTools::get_cells_at_coarsest_common_level().

8 years agoAdd modified tests for build_triangulation_from_patch() 1934/head
Arezou Ghesmati [Thu, 4 Feb 2016 01:04:21 +0000 (19:04 -0600)]
Add modified tests for build_triangulation_from_patch()

8 years agoadd the get_dof_to_support_patch_map() function to grid_tools and instantiations.
Spencer Patty [Wed, 3 Feb 2016 19:21:50 +0000 (13:21 -0600)]
add the get_dof_to_support_patch_map() function to grid_tools and instantiations.

8 years agoMerge pull request #2129 from kronbichler/master
Timo Heister [Tue, 2 Feb 2016 20:56:02 +0000 (15:56 -0500)]
Merge pull request #2129 from kronbichler/master

Fix bug in matrix multiplication

8 years agoFix bug in matrix multiplication 2129/head
Martin Kronbichler [Tue, 2 Feb 2016 19:20:48 +0000 (20:20 +0100)]
Fix bug in matrix multiplication

8 years agoMerge pull request #2127 from pesser/fix_warning
Wolfgang Bangerth [Mon, 1 Feb 2016 20:18:49 +0000 (14:18 -0600)]
Merge pull request #2127 from pesser/fix_warning

avoid warning about unused variable

8 years agoavoid warning about unused variable 2127/head
Patrick Esser [Mon, 1 Feb 2016 19:42:22 +0000 (20:42 +0100)]
avoid warning about unused variable

According to the documentation of ArpackSolver::solve the first parameter is
unused. Do not give it a name in the definition to avoid unused variable
warnings.

8 years agoMerge pull request #2126 from davydden/compute_line_dof_identities_assert
Denis Davydov [Mon, 1 Feb 2016 13:56:48 +0000 (14:56 +0100)]
Merge pull request #2126 from davydden/compute_line_dof_identities_assert

remove invalid assert in compute_line_dof_identities() related to ele…

8 years agoremove invalid assert in compute_line_dof_identities() related to element domination... 2126/head
Denis Davydov [Mon, 1 Feb 2016 10:26:01 +0000 (11:26 +0100)]
remove invalid assert in compute_line_dof_identities() related to element domination; add a unit test

8 years agoMerge pull request #2125 from tjhei/msvc_fix
Wolfgang Bangerth [Sat, 30 Jan 2016 03:06:08 +0000 (21:06 -0600)]
Merge pull request #2125 from tjhei/msvc_fix

fix msvc compilation

8 years agofix msvc compilation 2125/head
Timo Heister [Sat, 30 Jan 2016 02:44:28 +0000 (21:44 -0500)]
fix msvc compilation

8 years agoMerge pull request #2121 from sebastianGl31415/master
Luca Heltai [Fri, 29 Jan 2016 09:59:53 +0000 (10:59 +0100)]
Merge pull request #2121 from sebastianGl31415/master

modified step-34 tutorial introduction

8 years agoMerge pull request #2101 from drwells/continuation-line-whitespace
Luca Heltai [Fri, 29 Jan 2016 09:57:38 +0000 (10:57 +0100)]
Merge pull request #2101 from drwells/continuation-line-whitespace

Skip whitespace at the start of continuing lines.

8 years agoMerge pull request #2122 from bangerth/fix-64bit-output
Timo Heister [Thu, 28 Jan 2016 22:34:05 +0000 (23:34 +0100)]
Merge pull request #2122 from bangerth/fix-64bit-output

Adjust the output of two tests for 64-bit runs.

8 years agoUpdate intro.dox 2121/head
sebastianGl31415 [Thu, 28 Jan 2016 16:42:23 +0000 (17:42 +0100)]
Update intro.dox

I fixed language mistakes.

8 years agoMerge pull request #2116 from kronbichler/master
Wolfgang Bangerth [Thu, 28 Jan 2016 15:25:51 +0000 (09:25 -0600)]
Merge pull request #2116 from kronbichler/master

Fix 2:1 balance on artificial cells over periodic boundaries.

8 years agoChoose better names for tests 2116/head
Martin Kronbichler [Thu, 28 Jan 2016 14:26:31 +0000 (15:26 +0100)]
Choose better names for tests

8 years agoUse GeometryInfo to fix non-standard orientation case
Martin Kronbichler [Thu, 28 Jan 2016 14:09:21 +0000 (15:09 +0100)]
Use GeometryInfo to fix non-standard orientation case

8 years agoUpdate a changelog entry. 2101/head
David Wells [Thu, 28 Jan 2016 13:47:26 +0000 (08:47 -0500)]
Update a changelog entry.

8 years agoAllow parameter files to end with a '\'.
David Wells [Thu, 28 Jan 2016 13:44:48 +0000 (08:44 -0500)]
Allow parameter files to end with a '\'.

8 years agoAdjust the output of two tests for 64-bit runs. 2122/head
Wolfgang Bangerth [Thu, 28 Jan 2016 13:35:27 +0000 (07:35 -0600)]
Adjust the output of two tests for 64-bit runs.


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