]>
https://gitweb.dealii.org/ - dealii.git/log
Timo Heister [Sun, 14 Feb 2016 13:47:14 +0000 (08:47 -0500)]
suppress more warnings in external libs
this suppresses:
/ssd/libs-candi/trilinos-12.4.2-Source/include/Amesos2_Superludist_FunctionMap.hpp:285:17: warning: comparison of constant 67 with expression of type 'SLUD::DiagScale_t' is always false [-Wtautological-constant-out-of-range-compare]
char eq = AMESOS2_SLUD_GET_EQUED(*equed);
and
/ssd/libs-candi/trilinos-12.4.2-Source/include/Tpetra_Experimental_BlockCrsMatrix_def.hpp:2826:3: warning: all paths through this function will call itself [-Winfinite-recursion]
Wolfgang Bangerth [Sat, 13 Feb 2016 21:55:06 +0000 (15:55 -0600)]
Merge pull request #2179 from bangerth/doc-update-47
Doc update. Also add an assertion.
Wolfgang Bangerth [Sat, 13 Feb 2016 13:23:37 +0000 (07:23 -0600)]
Add an assertion.
Wolfgang Bangerth [Sat, 13 Feb 2016 13:23:28 +0000 (07:23 -0600)]
Update documentation.
David Wells [Sat, 13 Feb 2016 18:01:26 +0000 (13:01 -0500)]
Merge pull request #2181 from simonsticko/step5_release_mode
Update description in step-5 on how to switch to release mode.
Simon Sticko [Sat, 13 Feb 2016 16:23:45 +0000 (17:23 +0100)]
Update description in step-5 on how to switch to release mode.
Wolfgang Bangerth [Fri, 12 Feb 2016 22:23:24 +0000 (16:23 -0600)]
Merge pull request #2177 from jppelteret/fix_fe_nedelec_constructor
FE_Nedelec can now be constructed for up to degree 12 in debug mode
Jean-Paul Pelteret [Fri, 12 Feb 2016 22:20:11 +0000 (23:20 +0100)]
FE_Nedelec can now be constructed for up to degree 12 in debug mode
Set a degree-dependent threshold for computing face embedding matrices.
Fixes #2176.
Wolfgang Bangerth [Fri, 12 Feb 2016 19:21:25 +0000 (13:21 -0600)]
Merge pull request #2175 from srobertp/fix_adjust_vertices
Fix adjust vertices for GridTools::build_triangulation_from_patch()
Bruno Turcksin [Fri, 12 Feb 2016 18:57:08 +0000 (13:57 -0500)]
Merge pull request #2173 from danshapero/grid-data
Factored out repeated code in InterpolatedTensorProductGridData
Spencer Patty [Fri, 12 Feb 2016 18:41:40 +0000 (12:41 -0600)]
add new test to cover triangulations with hanging nodes so triangulations built have cells that don't pertain to patch
Spencer Patty [Fri, 12 Feb 2016 18:18:08 +0000 (12:18 -0600)]
we only need to check the cells that have user flags set since those are the ones that correspond to the patch set.
Wolfgang Bangerth [Thu, 11 Feb 2016 22:17:15 +0000 (16:17 -0600)]
Merge pull request #2170 from srobertp/adjust_triangle_vertices
add in support for changing vertices for
Spencer Patty [Thu, 11 Feb 2016 21:51:08 +0000 (15:51 -0600)]
add a test associated with the perturbed vertices changes that calls GridTools::distort_random on the triangulation and then runs the same test as in tests/grid/build_triangulation_from_patch_01.cc
Spencer Patty [Thu, 11 Feb 2016 21:49:25 +0000 (15:49 -0600)]
add code + documentation for support of vertices being perturbed to GridTools::build_triangulation_from_patches
Spencer Patty [Thu, 11 Feb 2016 21:48:25 +0000 (15:48 -0600)]
add changelog entry for changes to GridTools::build_triangulation_from_patches to support perturbed vertices.
danshapero [Thu, 11 Feb 2016 22:10:22 +0000 (14:10 -0800)]
Factored out repeated code in interpolated grid data
InterpolatedTensorProductGridData has some repeated code for finding
the right table index for an input point when computed the value or
gradient; this has been factored out into a protected member function
and the member data have been made protected instead of private for
ease of extension.
Wolfgang Bangerth [Thu, 11 Feb 2016 21:27:48 +0000 (15:27 -0600)]
Merge pull request #2171 from tjhei/example_updates
update graphical output in examples
Wolfgang Bangerth [Thu, 11 Feb 2016 21:27:16 +0000 (15:27 -0600)]
Merge pull request #2172 from tjhei/fix_test
fix tests/base/function_parser_09
Timo Heister [Thu, 11 Feb 2016 21:25:45 +0000 (16:25 -0500)]
fix tests/base/function_parser_09
Timo Heister [Thu, 11 Feb 2016 19:26:51 +0000 (14:26 -0500)]
update graphical output in examples
- switch from gmv to vtu in several places
- format numbers in filenames with leading zeros
- vector output in step-20
- step-29: enable some debug output
David Wells [Thu, 11 Feb 2016 18:01:42 +0000 (13:01 -0500)]
Merge pull request #2168 from tjhei/fix_link
fix link
Timo Heister [Thu, 11 Feb 2016 17:55:27 +0000 (12:55 -0500)]
fix link
../mail.html is a 404 and I prefer linking to "participate" instead of
the mailing list...
Wolfgang Bangerth [Thu, 11 Feb 2016 14:16:38 +0000 (08:16 -0600)]
Merge pull request #2161 from tjhei/step_53_warning
silence boost warnings in step-53
Timo Heister [Thu, 11 Feb 2016 13:33:58 +0000 (08:33 -0500)]
silence boost warnings in step-53
deprecated warning about boost_trait_def.hpp when using boost 1.60
Wolfgang Bangerth [Thu, 11 Feb 2016 14:12:25 +0000 (08:12 -0600)]
Merge pull request #2163 from tjhei/silence_boost_warnings
silence boost warnings
Timo Heister [Thu, 11 Feb 2016 13:44:53 +0000 (08:44 -0500)]
silence boost warnings
Timo Heister [Thu, 11 Feb 2016 13:24:07 +0000 (08:24 -0500)]
Merge pull request #2156 from tjhei/require_8_5
Require 8.5
Martin Kronbichler [Thu, 11 Feb 2016 13:17:41 +0000 (14:17 +0100)]
Merge pull request #2158 from tjhei/fix_warning
fix warning
Timo Heister [Thu, 11 Feb 2016 13:16:23 +0000 (08:16 -0500)]
fix warning
(unused parameter)
Timo Heister [Thu, 11 Feb 2016 12:23:48 +0000 (07:23 -0500)]
update deal.II version in documentation and tests
Timo Heister [Thu, 11 Feb 2016 12:20:00 +0000 (07:20 -0500)]
Require the current version of deal.II.
Timo Heister [Thu, 11 Feb 2016 12:10:58 +0000 (07:10 -0500)]
update VERSION
Timo Heister [Thu, 11 Feb 2016 12:08:36 +0000 (07:08 -0500)]
Merge pull request #2150 from tjhei/changes_before_84_branch
update changes and news for release
Timo Heister [Tue, 9 Feb 2016 15:04:00 +0000 (10:04 -0500)]
update changes and news for release
Timo Heister [Thu, 11 Feb 2016 12:04:43 +0000 (07:04 -0500)]
Merge pull request #2152 from tjhei/disable_compiler_warnings
disable gcc warnings
Timo Heister [Wed, 10 Feb 2016 18:09:04 +0000 (13:09 -0500)]
disable gcc warning
In file included from /usr/include/c++/4.8/cassert:43:0,
from /ssd/libs-
candi/boost_1_60_0/include/boost/property_tree/detail/json_parser/narrow_encoding.hpp:6,
from /ssd/libs-
candi/boost_1_60_0/include/boost/property_tree/detail/json_parser/read.hpp:14,
from /ssd/libs-
candi/boost_1_60_0/include/boost/property_tree/json_parser.hpp:16,
from /ssd/deal-git/source/base/parameter_handler.cc:26:
/ssd/libs-
candi/boost_1_60_0/include/boost/property_tree/detail/json_parser/narrow_encoding.hpp:
In member function ‘char
boost::property_tree::json_parser::detail::utf8_utf8_encoding::to_internal_trivial(char)
const’:
/ssd/libs-
candi/boost_1_60_0/include/boost/property_tree/detail/json_parser/narrow_encoding.hpp:71:25:
warning: comparison is always true due to limited range of data type
[-Wtype-limits]
assert(c <= 0x7f);
Wolfgang Bangerth [Wed, 10 Feb 2016 18:29:23 +0000 (12:29 -0600)]
Merge pull request #2153 from tjhei/update_trilinos_version
update known good trilinos version
Timo Heister [Wed, 10 Feb 2016 18:11:08 +0000 (13:11 -0500)]
update known good trilinos version
Wolfgang Bangerth [Wed, 10 Feb 2016 18:01:12 +0000 (12:01 -0600)]
Merge pull request #2131 from srobertp/dof_support_patches
add the get_dof_to_support_patch_map() function
Wolfgang Bangerth [Wed, 10 Feb 2016 17:58:00 +0000 (11:58 -0600)]
Merge pull request #2149 from asartori86/rand_function
added rand function to FunctionParser
alberto sartori [Tue, 9 Feb 2016 11:58:47 +0000 (12:58 +0100)]
added rand and rand_seed functions to FunctionParser
Spencer Patty [Wed, 10 Feb 2016 16:53:21 +0000 (10:53 -0600)]
run indent and add comments to describe test
Spencer Patty [Wed, 10 Feb 2016 16:47:18 +0000 (10:47 -0600)]
add test of FE_Q<dim>(2) with dof_to_support_patch_map
Wolfgang Bangerth [Tue, 9 Feb 2016 18:57:04 +0000 (12:57 -0600)]
Merge pull request #2151 from drwells/matrix-free-broken-link
Join a link that was broken over two lines.
David Wells [Tue, 9 Feb 2016 18:50:27 +0000 (13:50 -0500)]
Join a link that was broken over two lines.
This makes the link clickable.
Spencer Patty [Tue, 9 Feb 2016 17:59:43 +0000 (11:59 -0600)]
change template parameter to DoFHandlerType and make various changes as recommended in pull request
Wolfgang Bangerth [Tue, 9 Feb 2016 15:12:51 +0000 (09:12 -0600)]
Merge pull request #2144 from tjhei/wrapcomments
Wrapcomments
Martin Kronbichler [Mon, 8 Feb 2016 14:37:56 +0000 (15:37 +0100)]
Merge pull request #2148 from tjhei/scary_mpi_fixes
fix several scary MPI bugs
Timo Heister [Mon, 8 Feb 2016 14:20:18 +0000 (09:20 -0500)]
fix several scary MPI bugs
I am surprised the code in question used to work at all because we are just
overwriting random memory. I detected those using clang's argument type
warnings and extensible clang type annotation within MPICH.
Martin Kronbichler [Mon, 8 Feb 2016 13:26:40 +0000 (14:26 +0100)]
Merge pull request #2147 from kronbichler/master
Avoid C++11-isms in tests
Martin Kronbichler [Mon, 8 Feb 2016 10:37:01 +0000 (11:37 +0100)]
Avoid C++11-isms in tests
David Wells [Sun, 7 Feb 2016 17:38:48 +0000 (12:38 -0500)]
Merge pull request #2146 from tjhei/minor_doc_update
minor rewording
Timo Heister [Sun, 7 Feb 2016 14:37:36 +0000 (09:37 -0500)]
minor rewording
Timo Heister [Sun, 7 Feb 2016 01:35:23 +0000 (20:35 -0500)]
run wrapcomments
this sadly kills some of the manual indentation of @param and other
commands
Matthias Maier [Sun, 7 Feb 2016 02:12:30 +0000 (20:12 -0600)]
Merge pull request #2145 from tjhei/update_copyright_years
update copyright years
Matthias Maier [Sun, 7 Feb 2016 02:06:29 +0000 (20:06 -0600)]
Merge pull request #2143 from tjhei/documentation_updates
Documentation updates
Timo Heister [Sun, 7 Feb 2016 01:42:28 +0000 (20:42 -0500)]
update copyright years
Timo Heister [Sun, 7 Feb 2016 01:33:22 +0000 (20:33 -0500)]
fix astyle
Timo Heister [Sun, 7 Feb 2016 00:47:56 +0000 (19:47 -0500)]
wrapcomments.py: numbered list support
Timo Heister [Sun, 7 Feb 2016 00:21:36 +0000 (19:21 -0500)]
update update_copyright script
-i is only valid if you process a file
Timo Heister [Sat, 6 Feb 2016 23:59:42 +0000 (18:59 -0500)]
fix block formulas
Timo Heister [Sat, 6 Feb 2016 23:48:03 +0000 (18:48 -0500)]
doxygen doesn't like numbered lists
Timo Heister [Sat, 6 Feb 2016 23:47:33 +0000 (18:47 -0500)]
more manual formatting
Timo Heister [Sat, 6 Feb 2016 23:33:21 +0000 (18:33 -0500)]
improve wrapcomments.py
Timo Heister [Sat, 6 Feb 2016 22:40:54 +0000 (17:40 -0500)]
manual formatting fixes for wrapcomments.py
Timo Heister [Sat, 6 Feb 2016 22:19:54 +0000 (17:19 -0500)]
formatting: release step 0b
Timo Heister [Sat, 6 Feb 2016 21:49:01 +0000 (16:49 -0500)]
various documentation fixes
Wolfgang Bangerth [Sat, 6 Feb 2016 03:03:51 +0000 (21:03 -0600)]
Merge pull request #2142 from tjhei/msvc_bigobj_fix
fix MSVC compilation by adding /bigobj
Timo Heister [Sat, 6 Feb 2016 02:46:38 +0000 (21:46 -0500)]
fix MSVC compilation by adding /bigobj
this fixes "fatal error C1128: number of sections exceeded object file format limit"
Spencer Patty [Fri, 5 Feb 2016 18:49:26 +0000 (12:49 -0600)]
run indent again on changes
Wolfgang Bangerth [Fri, 5 Feb 2016 18:21:45 +0000 (12:21 -0600)]
Merge pull request #2100 from drwells/remove-whitespace-in-get_fe_by_name
Remove whitespace in get fe by name
Bruno Turcksin [Fri, 5 Feb 2016 16:57:02 +0000 (11:57 -0500)]
Merge pull request #2140 from tjhei/fix_tests2
fix tests without cxx11
Timo Heister [Fri, 5 Feb 2016 16:42:13 +0000 (11:42 -0500)]
fix tests without cxx11
Matthias Maier [Fri, 5 Feb 2016 15:25:30 +0000 (09:25 -0600)]
Merge pull request #2139 from tjhei/metis_test_output
fix metis tests
Timo Heister [Fri, 5 Feb 2016 14:53:41 +0000 (09:53 -0500)]
fix metis tests
On my machine with 64bit ints and 32bit metis I am getting the 32bit results
and so the tests fail. Fix this by always comparing against all possible
outputs. Also include additional output for metis_04.
Martin Kronbichler [Fri, 5 Feb 2016 14:49:47 +0000 (15:49 +0100)]
Merge pull request #2138 from tjhei/metis_user_include
add metis include dir to USER_INCLUDE_DIRS
Timo Heister [Fri, 5 Feb 2016 14:30:16 +0000 (09:30 -0500)]
add metis include dir to USER_INCLUDE_DIRS
otherwise tests/metis/metis_01a fails with "fatal error: 'metis.h' file not found"
Timo Heister [Fri, 5 Feb 2016 14:26:59 +0000 (09:26 -0500)]
Merge pull request #2137 from tjhei/fix_tests
fix several tests
Timo Heister [Fri, 5 Feb 2016 13:02:50 +0000 (08:02 -0500)]
fix several tests
David Wells [Fri, 5 Feb 2016 12:52:05 +0000 (07:52 -0500)]
Merge pull request #2136 from tjhei/fix__parallelepiped_test
fix tests/grid/grid_parallelepiped_05
Timo Heister [Fri, 5 Feb 2016 12:42:09 +0000 (07:42 -0500)]
fix tests/grid/grid_parallelepiped_05
Spencer Patty [Fri, 5 Feb 2016 04:42:10 +0000 (22:42 -0600)]
rerun the indent styling to be back in the proper indentation style
Spencer Patty [Fri, 5 Feb 2016 04:39:30 +0000 (22:39 -0600)]
add the user_flag saving and restoring so that dof_handler is truly unchanged (const)
Spencer Patty [Fri, 5 Feb 2016 04:13:42 +0000 (22:13 -0600)]
make various comment and naming changes based on discussion in pull request
Matthias Maier [Fri, 5 Feb 2016 04:11:32 +0000 (22:11 -0600)]
Merge pull request #2134 from tjhei/boost_blacklist2
Boost blacklist2
David Wells [Fri, 22 Jan 2016 18:16:41 +0000 (13:16 -0500)]
Add some spaces in the get_fe_by_name test.
David Wells [Fri, 22 Jan 2016 16:38:46 +0000 (11:38 -0500)]
Let FE names have spaces between words.
Previously, things like
FESystem[FE_Q(1) - FE_Q(2)]
caused parsing errors due to the spaces around the '-'. The new behavior is to
delete space that is not surrounded by 'word' characters (things that match the
regular expression [A-Za-z0-9_]) before parsing the name.
David Wells [Fri, 5 Feb 2016 03:30:34 +0000 (22:30 -0500)]
Merge pull request #2135 from tjhei/fix_compilation_grid_gen
fix compilation errors
Spencer Patty [Fri, 5 Feb 2016 03:28:21 +0000 (21:28 -0600)]
applied ./contrib/utilities/indent to changes in grid_tools.h and grid_tools.cc
Timo Heister [Fri, 5 Feb 2016 03:20:12 +0000 (22:20 -0500)]
fix compilation errors
gcc and intel rightfully want the template parameters spelled out.
Timo Heister [Fri, 5 Feb 2016 00:04:14 +0000 (19:04 -0500)]
also remove Boost_DIR
Timo Heister [Fri, 5 Feb 2016 00:00:23 +0000 (19:00 -0500)]
use correct version variables
Timo Heister [Fri, 5 Feb 2016 00:00:05 +0000 (19:00 -0500)]
cleanup boost variables
Matthias Maier [Thu, 4 Feb 2016 23:48:52 +0000 (17:48 -0600)]
Merge pull request #2132 from tjhei/boost_blacklist
blacklist boost version 1.58
Timo Heister [Thu, 4 Feb 2016 23:44:50 +0000 (18:44 -0500)]
move check to configure_boost
Wolfgang Bangerth [Thu, 4 Feb 2016 23:24:22 +0000 (17:24 -0600)]
Merge pull request #1936 from tjhei/hyper_rectangle_codim_fixes
fix *_hyper_rectangle for codim and add new subdivided_parallelepiped
Wolfgang Bangerth [Thu, 4 Feb 2016 23:23:33 +0000 (17:23 -0600)]
Merge pull request #2133 from tjhei/test_empty_results
handle empty test output
Timo Heister [Thu, 4 Feb 2016 23:17:49 +0000 (18:17 -0500)]
handle empty test output
If the make command to compile a test returns empty output (don't ask me
why that happened on my machine), quote it in the regex to avoid an
error like:
"string sub-command REGEX, mode MATCH needs at least 5 arguments"
Timo Heister [Thu, 4 Feb 2016 19:43:18 +0000 (14:43 -0500)]
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