]>
https://gitweb.dealii.org/ - dealii.git/log
Denis Davydov [Thu, 9 Feb 2017 17:00:53 +0000 (18:00 +0100)]
fix documentation of FEEvaluationAccess<dim,dim,Number>::submit_symmetric_gradient
Daniel Arndt [Wed, 8 Feb 2017 23:10:26 +0000 (00:10 +0100)]
Merge pull request #3931 from jppelteret/fix_tests_03
Refactor schur_complement operator
Jean-Paul Pelteret [Mon, 6 Feb 2017 14:43:21 +0000 (15:43 +0100)]
Test: Make lac/schur_complement_05 a bit more robust
Do not output residuals and convergence numbers. We now only check
whether we do the right thing by comparing the difference of the result
to a reference computation.
Denis Davydov [Wed, 8 Feb 2017 21:13:49 +0000 (22:13 +0100)]
Merge pull request #3951 from Rombur/step_18
Fix typo.
Bruno Turcksin [Wed, 8 Feb 2017 21:11:23 +0000 (16:11 -0500)]
Fix typo.
Matthias Maier [Wed, 8 Feb 2017 20:14:25 +0000 (14:14 -0600)]
Merge pull request #3950 from dealii/revert-3914-fix_tests_3
Revert "Tests: output variants for opencascade 6.9.1"
Denis Davydov [Wed, 8 Feb 2017 19:00:42 +0000 (20:00 +0100)]
Revert "Tests: output variants for opencascade 6.9.1"
Wolfgang Bangerth [Wed, 8 Feb 2017 18:28:07 +0000 (11:28 -0700)]
Merge pull request #3914 from tamiko/fix_tests_3
Tests: output variants for opencascade 6.9.1
Wolfgang Bangerth [Wed, 8 Feb 2017 16:47:28 +0000 (09:47 -0700)]
Merge pull request #3946 from davydden/tests/fe_enriched_step_36
use jacobi preconditioner in fe_enriched test eigenproblems
Martin Kronbichler [Wed, 8 Feb 2017 14:26:53 +0000 (15:26 +0100)]
Merge pull request #3940 from davydden/tests/parallel_block_vector_03
add extra output for parallel_block_vector_03
Martin Kronbichler [Wed, 8 Feb 2017 14:21:13 +0000 (15:21 +0100)]
Merge pull request #3949 from masterleinad/reduce_fe_abf_02
Simplify fe/abf_02
Daniel Arndt [Wed, 8 Feb 2017 12:54:10 +0000 (13:54 +0100)]
Simplify fe/abf_02
Denis Davydov [Tue, 7 Feb 2017 22:07:28 +0000 (23:07 +0100)]
tests: use jacobi preconditioner in fe_enriched test eigenproblems
Wolfgang Bangerth [Wed, 8 Feb 2017 05:55:03 +0000 (22:55 -0700)]
Merge pull request #3945 from drwells/clang-warnings
Fix some simple clang warnings.
David Wells [Wed, 8 Feb 2017 03:12:46 +0000 (22:12 -0500)]
Remove some unused variables.
This was caught by clang 3.9.
David Wells [Wed, 8 Feb 2017 03:12:11 +0000 (22:12 -0500)]
Check if a preprocessor variable is defined before use.
Clang complains about this with -Wundef on.
Wolfgang Bangerth [Tue, 7 Feb 2017 22:15:31 +0000 (15:15 -0700)]
Merge pull request #3936 from davydden/tests/memory_consumption_01
tests: extra output for memory_consumption_01
Wolfgang Bangerth [Tue, 7 Feb 2017 22:14:22 +0000 (15:14 -0700)]
Merge pull request #3938 from davydden/tests/oce_step_create_write
extra output for OCE 0.18
Wolfgang Bangerth [Tue, 7 Feb 2017 22:06:10 +0000 (15:06 -0700)]
Merge pull request #3943 from davydden/tests/no_flux_constraints_extra
extra output for no_flux_constraints when md5sum is not installed
Timo Heister [Tue, 7 Feb 2017 21:41:41 +0000 (16:41 -0500)]
Merge pull request #3941 from davydden/tests/fix_slepc_solve_04
fix slepc/solve_04
Denis Davydov [Tue, 7 Feb 2017 21:11:16 +0000 (22:11 +0100)]
tests: extra output for no_flux_constraints when md5sum is not installed
Denis Davydov [Tue, 7 Feb 2017 20:57:00 +0000 (21:57 +0100)]
tests: fix slepc/solve_04
Wolfgang Bangerth [Tue, 7 Feb 2017 20:50:14 +0000 (13:50 -0700)]
Merge pull request #3937 from davydden/tests/metis_extra_output
extra output for METIS tests
Denis Davydov [Tue, 7 Feb 2017 20:27:59 +0000 (21:27 +0100)]
tests: add extra output for parallel_blocK_vector_03
Denis Davydov [Tue, 7 Feb 2017 20:08:59 +0000 (21:08 +0100)]
tests: extra output for OCE 0.18
Denis Davydov [Tue, 7 Feb 2017 20:02:05 +0000 (21:02 +0100)]
tests: extra output for METIS tests
Denis Davydov [Tue, 7 Feb 2017 19:50:36 +0000 (20:50 +0100)]
tests: extra output for memory_consumption_01
Wolfgang Bangerth [Tue, 7 Feb 2017 17:57:38 +0000 (10:57 -0700)]
Merge pull request #3934 from tjhei/warn_unref
remove unused variable names
Timo Heister [Tue, 7 Feb 2017 16:24:49 +0000 (11:24 -0500)]
remove unused variable names
MSVC complains about this...
Martin Kronbichler [Tue, 7 Feb 2017 06:30:56 +0000 (07:30 +0100)]
Merge pull request #3928 from masterleinad/fix_filtered_iterator
Fix Initialization of FilteredIterator from base class
Daniel Arndt [Mon, 6 Feb 2017 16:50:21 +0000 (17:50 +0100)]
Add test for copying FilteredOperator
Daniel Arndt [Mon, 6 Feb 2017 18:37:33 +0000 (19:37 +0100)]
Merge pull request #3918 from koecher/deprecate_supports_distributed_data_static_member
deprecates static support_distributed_data member of vector declarations
Uwe Köcher [Mon, 6 Feb 2017 17:40:48 +0000 (18:40 +0100)]
adds DEAL_II_DEPRECATED to PREDEFINED of doc/doxygen/options.dox.in
Wolfgang Bangerth [Mon, 6 Feb 2017 15:47:50 +0000 (08:47 -0700)]
Merge pull request #3930 from tjhei/intel_inline_warning
remove intel warning about always_inline
Timo Heister [Mon, 6 Feb 2017 14:11:52 +0000 (09:11 -0500)]
Merge pull request #3850 from bangerth/add-abf-test
Add a test for the ABF element in 3d.
Timo Heister [Mon, 6 Feb 2017 14:10:25 +0000 (09:10 -0500)]
remove intel warning about always_inline
disable the following incorrect warning:
```
include/deal.II/base/tensor.h(824): warning #3415: the "always_inline"
attribute is ignored on non-inline functions
inline DEAL_II_ALWAYS_INLINE
```
Jean-Paul Pelteret [Mon, 6 Feb 2017 13:29:11 +0000 (14:29 +0100)]
Refactor SchurComplement operator.
Subsequent to the implementation of Payloads for LinearOperators, it is
necessary that compound operations such as this one be expressed in
terms of overloaded operations (operator+,* etc.) instead of in a
low-level format, with the operator functions v_mult etc. expanded
manually. This is because the payload is not correctly configured in the
latter case, and the operations defined on the Payload-level would not
align with those being performed by the higher-level LinearOperator
interface. When operator+,* etc. are called, the equivalent operations
for the payload are automatically set up.
Daniel Arndt [Sun, 5 Feb 2017 16:41:23 +0000 (17:41 +0100)]
Fix Initialization of FilteredIterator from base class
Wolfgang Bangerth [Sun, 5 Feb 2017 01:39:11 +0000 (18:39 -0700)]
Merge pull request #3925 from masterleinad/update_fe_project_test
Update fe/fe_project_2d
Daniel Arndt [Sat, 4 Feb 2017 17:22:05 +0000 (18:22 +0100)]
Update fe/fe_project_2d
Wolfgang Bangerth [Sat, 4 Feb 2017 15:01:02 +0000 (08:01 -0700)]
Merge pull request #3903 from tjhei/rework_instantiations
cleanup template-arguments.in
Timo Heister [Sat, 4 Feb 2017 14:33:23 +0000 (09:33 -0500)]
Merge pull request #3924 from drwells/boost-serialization-macro-warning
Avoid using 'defined' inside a macro.
Uwe Köcher [Fri, 3 Feb 2017 11:52:30 +0000 (12:52 +0100)]
deprecates static support_distributed_data member of vector declarations
David Wells [Sat, 4 Feb 2017 02:17:49 +0000 (21:17 -0500)]
Avoid using 'define' inside a macro.
This is technically illegal and clang rightfully complains.
Patch from https://github.com/boostorg/serialization/pull/49
Timo Heister [Fri, 3 Feb 2017 22:40:42 +0000 (17:40 -0500)]
fix expand-instantiations
- remove trailing newlines in pattern values
- skip spaces and newlines before first pattern
- report errors if pattern is not found
Martin Kronbichler [Fri, 3 Feb 2017 21:25:59 +0000 (22:25 +0100)]
Merge pull request #3923 from tjhei/undo_static_assert
Revert #3861 "add new macro for static asserts"
Martin Kronbichler [Fri, 3 Feb 2017 21:25:30 +0000 (22:25 +0100)]
Merge pull request #3891 from tjhei/step-57-fixes
update step-57
Denis Davydov [Fri, 3 Feb 2017 20:27:33 +0000 (21:27 +0100)]
Merge pull request #3916 from tamiko/do_not_use_as_needed_in_check
CMake: Disable -Wl,--as-needed in DEAL_II_HAVE_USABLE_FLAGS
Matthias Maier [Fri, 3 Feb 2017 08:35:32 +0000 (02:35 -0600)]
CMake: Disable -Wl,--as-needed in DEAL_II_HAVE_USABLE_FLAGS
This works around a serious regression with ld.bfd in combination with
-Wl,--as-needed when compiling a simple
int main () { return 0; }
and linking against a *huge* list of (entirely unused) libraries.
See #3686
Matthias Maier [Fri, 3 Feb 2017 05:37:51 +0000 (23:37 -0600)]
Tests: output variants for opencascade 6.9.1
Timo Heister [Fri, 3 Feb 2017 17:54:12 +0000 (12:54 -0500)]
Revert "add new macro for static asserts"
This reverts commit
c9283e795004308c570f356da95f97562f62d112 .
Martin Kronbichler [Fri, 3 Feb 2017 17:37:49 +0000 (18:37 +0100)]
Merge pull request #3919 from masterleinad/fix_get_fe_by_name_01
Adjust tolerance for FE_ABF
Daniel Arndt [Fri, 3 Feb 2017 14:03:05 +0000 (15:03 +0100)]
Adjust tolerance for FE_ABF
Wolfgang Bangerth [Fri, 3 Feb 2017 16:51:00 +0000 (09:51 -0700)]
Merge pull request #3907 from masterleinad/simplify_back_interpolate
Unify FETools::back_interpolate
Denis Davydov [Fri, 3 Feb 2017 16:47:59 +0000 (17:47 +0100)]
Merge pull request #3921 from davydden/spherical_component
Functions::Spherical add component argument to svalue/sgradient/shessian
Bruno Turcksin [Fri, 3 Feb 2017 16:33:12 +0000 (11:33 -0500)]
Merge pull request #3920 from davydden/workstream_hp
WorkStream: add a note on hp-FEM
Wolfgang Bangerth [Fri, 3 Feb 2017 16:21:34 +0000 (09:21 -0700)]
Merge pull request #3910 from tamiko/fix_tests_1
Tests: Provide output variant
Denis Davydov [Fri, 3 Feb 2017 14:29:42 +0000 (15:29 +0100)]
WorkStream: add a note on hp-FEM
Denis Davydov [Fri, 3 Feb 2017 15:52:19 +0000 (16:52 +0100)]
Functions::Spherical add component argument to svalue/sgradient/shessian
David Wells [Fri, 3 Feb 2017 13:05:29 +0000 (08:05 -0500)]
Merge pull request #3912 from tamiko/fix_tests_2
Tests: Do not run to example steps in tests
Daniel Arndt [Thu, 2 Feb 2017 00:15:09 +0000 (01:15 +0100)]
Simplify FETools::back_interpolate
Denis Davydov [Fri, 3 Feb 2017 10:26:19 +0000 (11:26 +0100)]
Merge pull request #3917 from masterleinad/rm_output_file_name
Remove output_file_name variable from tests
Daniel Arndt [Thu, 2 Feb 2017 22:30:25 +0000 (23:30 +0100)]
Get rid off output_file_name in tests
Jean-Paul Pelteret [Fri, 3 Feb 2017 09:01:36 +0000 (10:01 +0100)]
Move definition for TrilinosPayload destructor
Matthias Maier [Fri, 3 Feb 2017 04:19:02 +0000 (22:19 -0600)]
Tests: Do not run (only build) step-48 in build_tests
Matthias Maier [Fri, 3 Feb 2017 04:17:58 +0000 (22:17 -0600)]
Tests: Do not run (only build) step-23 in build_tests
Matthias Maier [Fri, 3 Feb 2017 05:21:13 +0000 (23:21 -0600)]
Tests: One more output variant for newer p4est
Matthias Maier [Fri, 3 Feb 2017 03:43:58 +0000 (21:43 -0600)]
Tests: Provide output variant
p4est after 1.1 outputs slightly different vtk files:
</PPoints>
<PDataArray type="Int32" Name="treeid" format="ascii"/>
</PCellData>
- <PPointData>
- </PPointData>
<Piece Source="1_0000.vtu"/>
</PUnstructuredGrid>
</VTKFile>
Simply provide output alternatives that don't have this empty section.
Matthias Maier [Fri, 3 Feb 2017 05:12:25 +0000 (23:12 -0600)]
Merge pull request #3890 from dealii/fix_PR_1783_02
Refactor identity_operator and null_operator for non-trivial payloads
Matthias Maier [Fri, 3 Feb 2017 03:55:45 +0000 (21:55 -0600)]
Merge pull request #3901 from masterleinad/restrict_c++11
Fix tests for non-c++11 build
Matthias Maier [Fri, 3 Feb 2017 03:54:24 +0000 (21:54 -0600)]
Merge pull request #3909 from drwells/remove-timer-fit-from-test
Remove a check on a timer slope.
David Wells [Fri, 3 Feb 2017 03:17:19 +0000 (22:17 -0500)]
Remove a check on a timer slope.
This commit gets rid of the part of a test that tried to check the
computational complexity of distributing DoFs by fitting a least squares
curve to timing data. This frequently failed and it is not really
needed: the test will time out if we ever go back to a quadratic time
algorithm.
Daniel Arndt [Thu, 2 Feb 2017 15:30:10 +0000 (16:30 +0100)]
Restrict tests requiring C++11
Wolfgang Bangerth [Thu, 2 Feb 2017 20:08:21 +0000 (13:08 -0700)]
Merge pull request #3904 from tjhei/fix_typos
fix minor typos
Wolfgang Bangerth [Thu, 2 Feb 2017 20:08:07 +0000 (13:08 -0700)]
Merge pull request #3905 from davydden/doc_updates_tests
more descriptive commands on how to setup tests for an already instal…
Wolfgang Bangerth [Thu, 2 Feb 2017 20:06:38 +0000 (13:06 -0700)]
Merge pull request #3906 from tjhei/assert_warning_compare_int
fix >=0 comparison warning
Timo Heister [Thu, 2 Feb 2017 18:51:55 +0000 (13:51 -0500)]
fix >=0 comparison warning
gcc 4.8 complained:
```
/ssd/deal-git/source/fe/mapping_q_generic.cc:2800:11: warning: comparison of unsigned expression >= 0 is always true [-Wtype-limits]
```
Timo Heister [Thu, 2 Feb 2017 18:49:46 +0000 (13:49 -0500)]
fix minor typos
Timo Heister [Sat, 28 Jan 2017 20:37:39 +0000 (15:37 -0500)]
update template-arguments.in
- document template-arguments.in
- delete DERIVATIVE_TENSORS FEVALUES_BASES DOFHANDLERS (now unused)
- update instantiations
Timo Heister [Sat, 28 Jan 2017 20:37:08 +0000 (15:37 -0500)]
update file location
Timo Heister [Sat, 28 Jan 2017 20:36:49 +0000 (15:36 -0500)]
remove only usage of DOFHANDLERS in .inst.in
Wolfgang Bangerth [Thu, 2 Feb 2017 18:29:35 +0000 (11:29 -0700)]
Merge pull request #3902 from tjhei/boost_no_unordered_double_def
Fix BOOST_NO_CXX11_HDR_UNORDERED_MAP warning
Denis Davydov [Thu, 2 Feb 2017 18:14:24 +0000 (19:14 +0100)]
more descriptive commands on how to setup tests for an already installed library
Timo Heister [Thu, 2 Feb 2017 18:06:32 +0000 (13:06 -0500)]
Fix BOOST_NO_CXX11_HDR_UNORDERED_MAP warning
When forcing CXX11 to off, I get the following warning with gcc <4.8:
```
/ssd/deal-git/bundled/boost-1.62.0/include/boost/config/stdlib/libstdcpp3.hpp:182:0: warning: "BOOST_NO_CXX11_HDR_UNORDERED_MAP" redefined
```
This change fixes this.
Daniel Arndt [Thu, 2 Feb 2017 10:55:04 +0000 (11:55 +0100)]
Merge pull request #3894 from kronbichler/fix_constraints_merge
Fix constraints merge
Wolfgang Bangerth [Wed, 1 Feb 2017 23:03:01 +0000 (16:03 -0700)]
Merge pull request #3895 from tamiko/fix_warnings
CMake: Also ignore -Wignored-attributes for external includes
Matthias Maier [Wed, 1 Feb 2017 22:44:22 +0000 (16:44 -0600)]
CMake: Also ignore -Wmisleading-indentation for external includes
Matthias Maier [Wed, 1 Feb 2017 22:25:21 +0000 (16:25 -0600)]
CMake: Also ignore -Wignored-attributes for external includes
Martin Kronbichler [Wed, 1 Feb 2017 20:48:50 +0000 (21:48 +0100)]
New test
Martin Kronbichler [Wed, 1 Feb 2017 20:48:35 +0000 (21:48 +0100)]
Fix merge of constraint matrices where lines cache exceeds local lines
Jean-Paul Pelteret [Wed, 1 Feb 2017 15:05:42 +0000 (16:05 +0100)]
Update method used to nullify Epetra_MultiVectors
Timo Heister [Wed, 1 Feb 2017 14:59:44 +0000 (09:59 -0500)]
update step-57
- always assemble rhs when assembling matrix (so we get correct boundary
values from the ConstraintMatrix)
- this fixes having 0 iterations in the first Newton iteration
- restructure assemble* functions to make this more clear
- reorder some comments
- redo results section (neater tables)
Jean-Paul Pelteret [Wed, 1 Feb 2017 10:47:38 +0000 (11:47 +0100)]
Re-add reinit functions to null_operator
Jean-Paul Pelteret [Wed, 1 Feb 2017 09:52:38 +0000 (10:52 +0100)]
Refactor identity_operator and null_operator for non-trivial payloads
When performing compound operations with LinearOperators, it is
necessary for the Payload type of all operations to be the same.
identity_operator did not take in a operator, so we used to define a
variant of it in the TrilinosWrappers namespace in order to set up the
underlying Payload. This lead to some compiler confusion as it could not
deduce which version of the function to call unless the namespace was
used to explicitly remove this ambiguity.
We've now removed the second identity_operator in TrilinosWrappers, and
have instead defined an alternative identity_operator that takes in an
exemplar LinearOperator. This version of the function will automatically
extract the range of operations from the exemplar, deduce the Payload
type AND initialise it correctly (this would not have been done
correctly before). This required the introduction of the inverse_payload
function to the Payload classes.
In anticipation of similar problems with null_operator, this
LinearOperator is also slightly refactored as to ensure that the payload
is correctly configured. This required the introduction of the
null_payload function to the Payload classes.
Fixes #3846
Martin Kronbichler [Wed, 1 Feb 2017 06:50:03 +0000 (07:50 +0100)]
Merge pull request #3889 from bangerth/fix-old-tbbs
Work around a problem when using very old TBB versions.
Wolfgang Bangerth [Tue, 31 Jan 2017 22:50:08 +0000 (15:50 -0700)]
Work around a problem when using very old TBB versions.
Wolfgang Bangerth [Tue, 31 Jan 2017 20:30:30 +0000 (13:30 -0700)]
Merge pull request #3885 from masterleinad/fix_get_fe_by_name_01
Fix get_fe_by_name_01
Martin Kronbichler [Tue, 31 Jan 2017 19:44:58 +0000 (20:44 +0100)]
Merge pull request #3884 from masterleinad/fix_mw_assembler
Fix use of AnyData in MeshWorker::Assembler
Martin Kronbichler [Tue, 31 Jan 2017 19:38:45 +0000 (20:38 +0100)]
Merge pull request #3888 from bangerth/fix-more-changelog-entries
Fix more changelog entries.
Wolfgang Bangerth [Tue, 31 Jan 2017 18:59:14 +0000 (11:59 -0700)]
Fix more changelog entries.
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