]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
7 years agoCheck return value of Trilinos functions in trilinos_vector_base.h 4078/head
Daniel Arndt [Fri, 17 Mar 2017 11:06:40 +0000 (12:06 +0100)]
Check return value of Trilinos functions in trilinos_vector_base.h

7 years agoFix unused variable warning in step-50 4074/head
Martin Kronbichler [Fri, 17 Mar 2017 06:52:25 +0000 (07:52 +0100)]
Fix unused variable warning in step-50

7 years agoMerge pull request #4058 from masterleinad/fix_symmetric_tensor_39
Martin Kronbichler [Fri, 17 Mar 2017 05:24:53 +0000 (06:24 +0100)]
Merge pull request #4058 from masterleinad/fix_symmetric_tensor_39

Fix base/symmetric_tensor_39 for clang

7 years agoMerge pull request #4071 from drwells/coverity-example-exceptions
Wolfgang Bangerth [Fri, 17 Mar 2017 04:42:05 +0000 (22:42 -0600)]
Merge pull request #4071 from drwells/coverity-example-exceptions

Catch exceptions in main() in later steps.

7 years agoImprove exception handling in two tutorials. 4071/head
David Wells [Fri, 17 Mar 2017 00:38:43 +0000 (20:38 -0400)]
Improve exception handling in two tutorials.

These were caught by Coverity.

7 years agoFix symmetric_tensor_39 4058/head
Daniel Arndt [Thu, 16 Mar 2017 22:31:06 +0000 (23:31 +0100)]
Fix symmetric_tensor_39

7 years agoMerge pull request #4073 from kronbichler/fix_coverity_issue
David Wells [Thu, 16 Mar 2017 22:30:55 +0000 (18:30 -0400)]
Merge pull request #4073 from kronbichler/fix_coverity_issue

Initialize all variables

7 years agoMerge pull request #4072 from drwells/fix-cmakelists-step-number
Daniel Arndt [Thu, 16 Mar 2017 22:12:46 +0000 (23:12 +0100)]
Merge pull request #4072 from drwells/fix-cmakelists-step-number

Fix step numbers in CMakeLists.txt comments.

7 years agoInitialize all variables 4073/head
Martin Kronbichler [Thu, 16 Mar 2017 21:10:33 +0000 (22:10 +0100)]
Initialize all variables

7 years agoFix step numbers in CMakeLists.txt comments. 4072/head
David Wells [Thu, 16 Mar 2017 20:15:02 +0000 (16:15 -0400)]
Fix step numbers in CMakeLists.txt comments.

7 years agoMerge pull request #4069 from tamiko/fix_warnings_in_examples
Wolfgang Bangerth [Wed, 15 Mar 2017 19:37:19 +0000 (13:37 -0600)]
Merge pull request #4069 from tamiko/fix_warnings_in_examples

Examples: Minor stylistic change

7 years agoChange the error message to ExcInvalidRange in two more asserts 4069/head
Matthias Maier [Wed, 15 Mar 2017 19:31:10 +0000 (14:31 -0500)]
Change the error message to ExcInvalidRange in two more asserts

7 years agoMerge pull request #4068 from tamiko/fix_warnings_in_examples
Wolfgang Bangerth [Wed, 15 Mar 2017 19:30:13 +0000 (13:30 -0600)]
Merge pull request #4068 from tamiko/fix_warnings_in_examples

Examples Fix unu variable warnings

7 years agoFix unused variable warnings in step-47 4068/head
Matthias Maier [Wed, 15 Mar 2017 19:08:18 +0000 (14:08 -0500)]
Fix unused variable warnings in step-47

7 years agoFix unused variable warnings in step-45
Matthias Maier [Wed, 15 Mar 2017 19:09:09 +0000 (14:09 -0500)]
Fix unused variable warnings in step-45

7 years agoFix unused variable warnings in step-41
Matthias Maier [Wed, 15 Mar 2017 19:10:38 +0000 (14:10 -0500)]
Fix unused variable warnings in step-41

7 years agoFix unused variable warnings in step-31
Matthias Maier [Wed, 15 Mar 2017 19:12:54 +0000 (14:12 -0500)]
Fix unused variable warnings in step-31

7 years agoFix unused variable warnings in step-30
Matthias Maier [Wed, 15 Mar 2017 19:11:58 +0000 (14:11 -0500)]
Fix unused variable warnings in step-30

7 years agoFix unused variable warnings in step-26
Matthias Maier [Wed, 15 Mar 2017 19:13:42 +0000 (14:13 -0500)]
Fix unused variable warnings in step-26

7 years agoFix unused variable warnings in step-23
Matthias Maier [Wed, 15 Mar 2017 19:04:45 +0000 (14:04 -0500)]
Fix unused variable warnings in step-23

7 years agoMerge pull request #4066 from tamiko/cmake_use_scotch_include
Wolfgang Bangerth [Wed, 15 Mar 2017 19:16:47 +0000 (13:16 -0600)]
Merge pull request #4066 from tamiko/cmake_use_scotch_include

CMake: Do not filter Scotch include directory in trilinos TPL includes

7 years agoFix unused variable warnings in step-9
Matthias Maier [Wed, 15 Mar 2017 19:07:13 +0000 (14:07 -0500)]
Fix unused variable warnings in step-9

7 years agoMerge pull request #4063 from davydden/parallel_reduce_start_end
Martin Kronbichler [Wed, 15 Mar 2017 08:06:10 +0000 (09:06 +0100)]
Merge pull request #4063 from davydden/parallel_reduce_start_end

extend internal::VectorOperations::parallel_reduce() to [start,end)

7 years agoremove the log entry 4063/head
Denis Davydov [Wed, 15 Mar 2017 07:43:57 +0000 (08:43 +0100)]
remove the log entry

7 years agoMerge pull request #3986 from tamiko/compile_examples
Wolfgang Bangerth [Tue, 14 Mar 2017 21:49:37 +0000 (15:49 -0600)]
Merge pull request #3986 from tamiko/compile_examples

CMake: Compile examples if examples component is set up

7 years agoCMake: Remove a broken workaround 4066/head
Matthias Maier [Tue, 14 Mar 2017 21:08:48 +0000 (16:08 -0500)]
CMake: Remove a broken workaround

7 years agoCMake: Do not compile examples on Windows targets 3986/head
Matthias Maier [Tue, 14 Mar 2017 16:12:31 +0000 (11:12 -0500)]
CMake: Do not compile examples on Windows targets

7 years agoCMake: Enable example compilation by default
Matthias Maier [Fri, 10 Mar 2017 16:49:08 +0000 (10:49 -0600)]
CMake: Enable example compilation by default

7 years agoCMake: Compile examples if examples component is set up
Matthias Maier [Sat, 18 Feb 2017 00:37:45 +0000 (18:37 -0600)]
CMake: Compile examples if examples component is set up

7 years agoCMake: Add an option to compile examples as well
Matthias Maier [Thu, 9 Mar 2017 22:42:28 +0000 (16:42 -0600)]
CMake: Add an option to compile examples as well

7 years agoCMake: Put RUN_COMMAND macro into separate file
Matthias Maier [Thu, 9 Mar 2017 23:44:37 +0000 (17:44 -0600)]
CMake: Put RUN_COMMAND macro into separate file

Further, justify this approach with references to the official cmake
wiki.

7 years agoExamples: Annotate dependency clause in example CMakeLists.txt files
Matthias Maier [Thu, 9 Mar 2017 23:03:12 +0000 (17:03 -0600)]
Examples: Annotate dependency clause in example CMakeLists.txt files

7 years agoBugfix: Let DEAL_II_INSOURCE_SETUP_TARGET add all include directories
Matthias Maier [Sat, 18 Feb 2017 02:16:37 +0000 (20:16 -0600)]
Bugfix: Let DEAL_II_INSOURCE_SETUP_TARGET add all include directories

7 years agochanged signature of internal::VectorOperations::parallel_* functions to be (op,begin...
Denis Davydov [Tue, 14 Mar 2017 16:06:39 +0000 (17:06 +0100)]
changed signature of internal::VectorOperations::parallel_* functions to be (op,begin,end,...)

7 years agoextend internal::VectorOperations::parallel_reduce() to [start,end)
Denis Davydov [Tue, 14 Mar 2017 15:35:40 +0000 (16:35 +0100)]
extend internal::VectorOperations::parallel_reduce() to [start,end)

7 years agoMerge pull request #4062 from kronbichler/adjust_test_accuracy
Martin Kronbichler [Tue, 14 Mar 2017 12:11:18 +0000 (13:11 +0100)]
Merge pull request #4062 from kronbichler/adjust_test_accuracy

Relax tolerance for 'exact' integration a bit

7 years agoRelax tolerance for 'exact' integration a bit 4062/head
Martin Kronbichler [Tue, 14 Mar 2017 09:37:21 +0000 (10:37 +0100)]
Relax tolerance for 'exact' integration a bit

7 years agoMerge pull request #4059 from kronbichler/vectorized_array_includes
Martin Kronbichler [Tue, 14 Mar 2017 07:49:27 +0000 (08:49 +0100)]
Merge pull request #4059 from kronbichler/vectorized_array_includes

Add forward declaration of vectorized array

7 years agoMerge pull request #4060 from kronbichler/fix_lapack_test
Bruno Turcksin [Mon, 13 Mar 2017 00:21:54 +0000 (20:21 -0400)]
Merge pull request #4060 from kronbichler/fix_lapack_test

Avoid floating point exception in Lapack test

7 years agoSubstitute multiplications by 2 by additions (strength reduction). 4059/head
Martin Kronbichler [Sun, 12 Mar 2017 18:58:57 +0000 (19:58 +0100)]
Substitute multiplications by 2 by additions (strength reduction).

7 years agoAdd changelog
Martin Kronbichler [Sun, 12 Mar 2017 19:02:10 +0000 (20:02 +0100)]
Add changelog

7 years agoTest that norms on tensors of VectorizedArray work
Martin Kronbichler [Sun, 12 Mar 2017 18:59:38 +0000 (19:59 +0100)]
Test that norms on tensors of VectorizedArray work

7 years agoAvoid floating point exception in Lapack test 4060/head
Martin Kronbichler [Sun, 12 Mar 2017 19:16:24 +0000 (20:16 +0100)]
Avoid floating point exception in Lapack test

7 years agoMove forward declaration of VectorizedArray to more central place
Martin Kronbichler [Sun, 12 Mar 2017 18:58:23 +0000 (19:58 +0100)]
Move forward declaration of VectorizedArray to more central place

7 years agoMerge pull request #4055 from nfehn/master
Martin Kronbichler [Sat, 11 Mar 2017 06:59:08 +0000 (07:59 +0100)]
Merge pull request #4055 from nfehn/master

Ensure that the state is set correctly when applying LU factorization…

7 years agoMerge pull request #4057 from masterleinad/fix_step-36_parpack_mf
David Wells [Fri, 10 Mar 2017 16:35:02 +0000 (11:35 -0500)]
Merge pull request #4057 from masterleinad/fix_step-36_parpack_mf

arpack/step-36_parpack_mf requires p::d::Tria

7 years agoarpack/step-36_parpack_mf requires p::d::Tria 4057/head
Daniel Arndt [Fri, 10 Mar 2017 15:23:24 +0000 (16:23 +0100)]
arpack/step-36_parpack_mf requires p::d::Tria

7 years agoMerge pull request #4052 from kronbichler/flexibility_matrix_free_operator
Daniel Arndt [Fri, 10 Mar 2017 09:57:43 +0000 (10:57 +0100)]
Merge pull request #4052 from kronbichler/flexibility_matrix_free_operator

Allow component masks in MatrixFreeOperators::Base

7 years agoMerge pull request #4054 from kronbichler/fix_fe_values_listener
Martin Kronbichler [Fri, 10 Mar 2017 06:55:05 +0000 (07:55 +0100)]
Merge pull request #4054 from kronbichler/fix_fe_values_listener

Fix disconnect of listener in FEValues

7 years agoTest for matrix-free operator masking 4052/head
Martin Kronbichler [Wed, 8 Mar 2017 14:58:47 +0000 (15:58 +0100)]
Test for matrix-free operator masking

7 years agoAllow selection of components in MatrixFreeOperators::Base
Martin Kronbichler [Wed, 8 Mar 2017 14:58:24 +0000 (15:58 +0100)]
Allow selection of components in MatrixFreeOperators::Base

7 years agoSet state = unusable before computing the LU factorization of LAPACKFullMatrix 4055/head
Niklas Fehn [Thu, 9 Mar 2017 16:38:24 +0000 (17:38 +0100)]
Set state = unusable before computing the LU factorization of LAPACKFullMatrix

7 years agotest has been added to verify the state of LAPACKFullMatrix after having computed...
Niklas Fehn [Thu, 9 Mar 2017 10:21:34 +0000 (11:21 +0100)]
test has been added to verify the state of LAPACKFullMatrix after having computed the LU factorization

7 years agoFix disconnect of listener. 4054/head
Martin Kronbichler [Wed, 8 Mar 2017 21:21:16 +0000 (22:21 +0100)]
Fix disconnect of listener.

7 years agoEnsure that the state is set correctly when applying LU factorization to LAPACKFullMa...
Niklas Fehn [Thu, 9 Mar 2017 08:20:23 +0000 (09:20 +0100)]
Ensure that the state is set correctly when applying LU factorization to LAPACKFullMatrix.

7 years agoMerge pull request #4053 from kronbichler/limit_threads_mf_multigrid
Martin Kronbichler [Wed, 8 Mar 2017 19:34:12 +0000 (20:34 +0100)]
Merge pull request #4053 from kronbichler/limit_threads_mf_multigrid

Limit number of threads to 1 in some parallel tests.

7 years agoMerge pull request #4043 from kronbichler/trilinos_vector_avoid_invalid_mem_access
Wolfgang Bangerth [Wed, 8 Mar 2017 17:23:30 +0000 (10:23 -0700)]
Merge pull request #4043 from kronbichler/trilinos_vector_avoid_invalid_mem_access

Reduce access to invalid communicator as much as possible.

7 years agoMerge pull request #4050 from kronbichler/fix_cell_similarity
Wolfgang Bangerth [Wed, 8 Mar 2017 17:22:07 +0000 (10:22 -0700)]
Merge pull request #4050 from kronbichler/fix_cell_similarity

Fix two subtle bugs with cell similarity

7 years agoMerge pull request #4034 from masterleinad/fix_detructor_throw
Wolfgang Bangerth [Wed, 8 Mar 2017 17:00:53 +0000 (10:00 -0700)]
Merge pull request #4034 from masterleinad/fix_detructor_throw

Fix asserts in destructors

7 years agoLimit number of threads to 1 in some parallel tests. 4053/head
Martin Kronbichler [Wed, 8 Mar 2017 15:05:04 +0000 (16:05 +0100)]
Limit number of threads to 1 in some parallel tests.

7 years agoMerge pull request #4040 from drwells/deprecate-swappable
Martin Kronbichler [Wed, 8 Mar 2017 13:51:12 +0000 (14:51 +0100)]
Merge pull request #4040 from drwells/deprecate-swappable

Deprecate SwappableVector.

7 years agoAdd additional listener to grid movement 4050/head
Martin Kronbichler [Wed, 8 Mar 2017 10:10:16 +0000 (11:10 +0100)]
Add additional listener to grid movement

7 years agoAdd changelog 4043/head
Martin Kronbichler [Wed, 8 Mar 2017 09:36:43 +0000 (10:36 +0100)]
Add changelog

7 years agoAdd test for communication patterns supported now.
Martin Kronbichler [Wed, 8 Mar 2017 09:36:29 +0000 (10:36 +0100)]
Add test for communication patterns supported now.

7 years agoDo not duplicate the communicator in parallel triangulations
Martin Kronbichler [Tue, 7 Mar 2017 17:57:15 +0000 (18:57 +0100)]
Do not duplicate the communicator in parallel triangulations

Delete unused vector memory when triangulation changes.

7 years agoIntroduce function to delete all unused vectors in GrowingVectorMemory
Martin Kronbichler [Tue, 7 Mar 2017 17:56:59 +0000 (18:56 +0100)]
Introduce function to delete all unused vectors in GrowingVectorMemory

7 years agoMerge pull request #4051 from drwells/fix-io-checks
Wolfgang Bangerth [Wed, 8 Mar 2017 04:21:01 +0000 (21:21 -0700)]
Merge pull request #4051 from drwells/fix-io-checks

Improve some IO checks

7 years agoMerge pull request #4046 from nfehn/master
David Wells [Wed, 8 Mar 2017 02:37:28 +0000 (21:37 -0500)]
Merge pull request #4046 from nfehn/master

Add operators *= and /= to LAPACKFullMatrix

7 years agoSimplify a geometrical check. 4051/head
David Wells [Wed, 8 Mar 2017 01:10:38 +0000 (20:10 -0500)]
Simplify a geometrical check.

Both branches currently throw an exception, but the second message is more
descriptive.

7 years agoRedo some checks to throw ExcIO.
David Wells [Wed, 8 Mar 2017 01:10:27 +0000 (20:10 -0500)]
Redo some checks to throw ExcIO.

7 years agoAdd changelog
Martin Kronbichler [Tue, 7 Mar 2017 17:25:25 +0000 (18:25 +0100)]
Add changelog

7 years agoFix a bug in cell similarity detection with FESystem
Martin Kronbichler [Tue, 7 Mar 2017 17:24:50 +0000 (18:24 +0100)]
Fix a bug in cell similarity detection with FESystem

7 years agoMerge pull request #4048 from jppelteret/doxygen_error_log
Matthias Maier [Tue, 7 Mar 2017 18:05:23 +0000 (12:05 -0600)]
Merge pull request #4048 from jppelteret/doxygen_error_log

When doxygen fails, make a copy of the error log for debugging purposes.

7 years agoFix a bug in cell similarity detection after GridTools::transform
Martin Kronbichler [Tue, 7 Mar 2017 17:24:31 +0000 (18:24 +0100)]
Fix a bug in cell similarity detection after GridTools::transform

7 years agoWhen doxygen fails, make a copy of the error log for debugging purposes. 4048/head
Jean-Paul Pelteret [Tue, 7 Mar 2017 17:06:38 +0000 (18:06 +0100)]
When doxygen fails, make a copy of the error log for debugging purposes.

7 years agoMerge pull request #4047 from kronbichler/fix_more_tests_2
Wolfgang Bangerth [Tue, 7 Mar 2017 16:10:28 +0000 (09:10 -0700)]
Merge pull request #4047 from kronbichler/fix_more_tests_2

Fix tests without C++11

7 years agoFix tests without C++11 4047/head
Martin Kronbichler [Tue, 7 Mar 2017 14:54:22 +0000 (15:54 +0100)]
Fix tests without C++11

7 years agoAdd operators *= and /= to LAPACKFullMatrix 4046/head
Niklas Fehn [Tue, 7 Mar 2017 10:41:42 +0000 (11:41 +0100)]
Add operators *= and /= to LAPACKFullMatrix

7 years agoReduce access to possibly invalid communicator as much as possible.
Martin Kronbichler [Mon, 6 Mar 2017 08:17:28 +0000 (09:17 +0100)]
Reduce access to possibly invalid communicator as much as possible.

7 years agoCatch throwing function in destructor 4034/head
Daniel Arndt [Sun, 5 Mar 2017 15:50:36 +0000 (16:50 +0100)]
Catch throwing function in destructor

7 years agoMerge pull request #4045 from kronbichler/improve_feevaluation_doc
Bruno Turcksin [Mon, 6 Mar 2017 13:43:08 +0000 (08:43 -0500)]
Merge pull request #4045 from kronbichler/improve_feevaluation_doc

Extend documentation of FEEvaluation regarding threads.

7 years agoMerge pull request #4042 from kronbichler/fix_more_tests
Bruno Turcksin [Mon, 6 Mar 2017 13:33:12 +0000 (08:33 -0500)]
Merge pull request #4042 from kronbichler/fix_more_tests

Fix two more tests

7 years agoMerge pull request #4044 from drwells/remove-timer-from-test
Martin Kronbichler [Mon, 6 Mar 2017 12:56:08 +0000 (13:56 +0100)]
Merge pull request #4044 from drwells/remove-timer-from-test

Do not use a timer in a test.

7 years agoExtend documentation of FEEvaluation regarding threads. 4045/head
Martin Kronbichler [Mon, 6 Mar 2017 12:48:37 +0000 (13:48 +0100)]
Extend documentation of FEEvaluation regarding threads.

7 years agoDo not use a timer in a test. 4044/head
David Wells [Mon, 6 Mar 2017 12:02:25 +0000 (07:02 -0500)]
Do not use a timer in a test.

This test tried to ensure that an algorithm ran in linear time by taking runtime
measurements: this tends to fail intermittently so remove these checks.

The test is still useful since it will time out if we regress to the old
quadratic time algorithm.

7 years agoMerge pull request #4037 from masterleinad/fix_pre_c++11
Martin Kronbichler [Mon, 6 Mar 2017 10:17:18 +0000 (11:17 +0100)]
Merge pull request #4037 from masterleinad/fix_pre_c++11

Fix pre c++11 issues

7 years agoFix pre-C++11 issues 4037/head
Daniel Arndt [Sun, 5 Mar 2017 21:53:49 +0000 (22:53 +0100)]
Fix pre-C++11 issues

7 years agoProvide additional 64 bit output numbers for DataOut. 4042/head
Martin Kronbichler [Mon, 6 Mar 2017 06:59:52 +0000 (07:59 +0100)]
Provide additional 64 bit output numbers for DataOut.

7 years agoAdd output file for OpenMPI 1.8.x.
Martin Kronbichler [Mon, 6 Mar 2017 06:57:24 +0000 (07:57 +0100)]
Add output file for OpenMPI 1.8.x.

Verified on two machines with different installations, using 1.8.7 and 1.8.8

7 years agoMerge pull request #4039 from drwells/use-assert-internal-error
Martin Kronbichler [Mon, 6 Mar 2017 06:35:46 +0000 (07:35 +0100)]
Merge pull request #4039 from drwells/use-assert-internal-error

Use Assert, not AssertThrow, with ExcInternalError.

7 years agoMerge pull request #4041 from drwells/update-contributing-links
Wolfgang Bangerth [Mon, 6 Mar 2017 00:06:46 +0000 (17:06 -0700)]
Merge pull request #4041 from drwells/update-contributing-links

Update video lecture links to point to Colorado State.

7 years agoUpdate video lecture links to point to Colorado State. 4041/head
David Wells [Sun, 5 Mar 2017 23:37:51 +0000 (18:37 -0500)]
Update video lecture links to point to Colorado State.

7 years agoDeprecate SwappableVector. 4040/head
David Wells [Sun, 5 Mar 2017 23:09:33 +0000 (18:09 -0500)]
Deprecate SwappableVector.

There are no tests for this class and it has been superceded by the
serialization classes.

7 years agoUse Assert, not AssertThrow, with ExcInternalError. 4039/head
David Wells [Sun, 5 Mar 2017 22:56:44 +0000 (17:56 -0500)]
Use Assert, not AssertThrow, with ExcInternalError.

7 years agoMerge pull request #4035 from kronbichler/fix_nonmpi_tests
Timo Heister [Sun, 5 Mar 2017 21:55:15 +0000 (16:55 -0500)]
Merge pull request #4035 from kronbichler/fix_nonmpi_tests

Enable tests to run without MPI

7 years agoEnable tests to run without MPI. 4035/head
Martin Kronbichler [Sun, 5 Mar 2017 19:04:49 +0000 (20:04 +0100)]
Enable tests to run without MPI.

7 years agoMerge pull request #4032 from kronbichler/fix_mpi_tests
Martin Kronbichler [Sun, 5 Mar 2017 17:14:12 +0000 (18:14 +0100)]
Merge pull request #4032 from kronbichler/fix_mpi_tests

Fix multigrid/mpi tests

7 years agoMerge pull request #4029 from kronbichler/fix_test_output_with_fma
Timo Heister [Sun, 5 Mar 2017 16:00:44 +0000 (11:00 -0500)]
Merge pull request #4029 from kronbichler/fix_test_output_with_fma

Add output variants for builds with FMA

7 years agoMerge pull request #4033 from masterleinad/fix_unused_var
Martin Kronbichler [Sun, 5 Mar 2017 15:59:24 +0000 (16:59 +0100)]
Merge pull request #4033 from masterleinad/fix_unused_var

Handle more unused variables and parameters

7 years agoHandle more unused variables and parameters 4033/head
Daniel Arndt [Sun, 5 Mar 2017 15:37:15 +0000 (16:37 +0100)]
Handle more unused variables and parameters


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