]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
9 years agoUpdate changelog, as requested by Matthias. 444/head
Wolfgang Bangerth [Thu, 15 Jan 2015 15:48:48 +0000 (09:48 -0600)]
Update changelog, as requested by Matthias.

9 years agoMerge pull request #442 from bangerth/bring-back-mpi-init
Martin Kronbichler [Thu, 15 Jan 2015 13:03:20 +0000 (14:03 +0100)]
Merge pull request #442 from bangerth/bring-back-mpi-init

Bring back the constructor of MPI_InitFinalize.

9 years agoMerge pull request #437 from bangerth/update-copyright-years
Matthias Maier [Thu, 15 Jan 2015 12:57:43 +0000 (13:57 +0100)]
Merge pull request #437 from bangerth/update-copyright-years

Some perl and shell magic.

9 years agoMerge pull request #443 from tjhei/comment_wrapping
Wolfgang Bangerth [Thu, 15 Jan 2015 12:33:18 +0000 (06:33 -0600)]
Merge pull request #443 from tjhei/comment_wrapping

Comment wrapping

9 years agoIgnore copyright update commits when determining the last update to a file. 437/head
Wolfgang Bangerth [Wed, 14 Jan 2015 16:27:29 +0000 (10:27 -0600)]
Ignore copyright update commits when determining the last update to a file.

9 years agoUpdate copyright years of 3488 files.
Wolfgang Bangerth [Tue, 13 Jan 2015 21:14:55 +0000 (15:14 -0600)]
Update copyright years of 3488 files.

9 years agoAdd a header to this file.
Wolfgang Bangerth [Tue, 13 Jan 2015 20:58:17 +0000 (14:58 -0600)]
Add a header to this file.

9 years agoAdd a script that updates the copyright year of all files.
Wolfgang Bangerth [Tue, 13 Jan 2015 20:46:05 +0000 (14:46 -0600)]
Add a script that updates the copyright year of all files.

9 years agowrapcomments 443/head
Timo Heister [Wed, 14 Jan 2015 18:18:25 +0000 (13:18 -0500)]
wrapcomments

9 years agofix formatting
Timo Heister [Wed, 14 Jan 2015 18:13:14 +0000 (13:13 -0500)]
fix formatting

9 years agoBring back the constructor of MPI_InitFinalize. 442/head
Wolfgang Bangerth [Wed, 14 Jan 2015 17:20:57 +0000 (11:20 -0600)]
Bring back the constructor of MPI_InitFinalize.

I had removed it in a previous patch, thinking that it was deprecated,
but in fact it wasn't. Rather than undoing the change, provide the
third argument of another constructor with a default value.

9 years agoMerge pull request #441 from tjhei/fe_q_image_in_doc
Wolfgang Bangerth [Wed, 14 Jan 2015 17:13:15 +0000 (11:13 -0600)]
Merge pull request #441 from tjhei/fe_q_image_in_doc

Fix FE_Q images in documentation

9 years agoMerge pull request #440 from Rombur/FreeBSD
Bruno Turcksin [Wed, 14 Jan 2015 17:05:25 +0000 (11:05 -0600)]
Merge pull request #440 from Rombur/FreeBSD

Update dealii::multithread_info.n_cpus for FreeBSD

9 years agodealii::multithread_info.n_cpus returns the correct number of CPU on FreeBSD. 440/head
Bruno Turcksin [Wed, 14 Jan 2015 16:17:45 +0000 (10:17 -0600)]
dealii::multithread_info.n_cpus returns the correct number of CPU on FreeBSD.

9 years agowrapcomments 441/head
Timo Heister [Wed, 14 Jan 2015 16:57:56 +0000 (11:57 -0500)]
wrapcomments

9 years agochange <img> to @image
Timo Heister [Wed, 14 Jan 2015 16:47:31 +0000 (11:47 -0500)]
change <img> to @image

9 years agoMerge pull request #438 from kronbichler/master
Wolfgang Bangerth [Wed, 14 Jan 2015 00:32:14 +0000 (18:32 -0600)]
Merge pull request #438 from kronbichler/master

Check for job_supports_mpi() inside MPI Allgather functions.

9 years agoMerge pull request #436 from bangerth/remove-old-benchmarks
Matthias Maier [Tue, 13 Jan 2015 21:54:16 +0000 (22:54 +0100)]
Merge pull request #436 from bangerth/remove-old-benchmarks

Remove old benchmarks that haven't been looked at in years.

9 years agoCheck for job_supports_mpi() inside MPI Allgather functions. 438/head
Martin Kronbichler [Tue, 13 Jan 2015 21:39:18 +0000 (22:39 +0100)]
Check for job_supports_mpi() inside MPI Allgather functions.

MPI calls are only allowed if MPI_Init has been called. To simplify
calls to MPI::sum, MPI::max etc. and avoid putting job_supports_mpi()
around them, place this hopefully very cheap test inside the functions.

Also moved job_supports_mpi() from the namespace Utilities::System to
Utilities::MPI.

9 years agoRemove old benchmarks that haven't been looked at in years. 436/head
Wolfgang Bangerth [Tue, 13 Jan 2015 20:16:41 +0000 (14:16 -0600)]
Remove old benchmarks that haven't been looked at in years.

They almost certainly also don't build any more.

9 years agoMerge pull request #424 from bangerth/remove-deprecated-class-MGDoFHandler
Wolfgang Bangerth [Tue, 13 Jan 2015 20:07:23 +0000 (14:07 -0600)]
Merge pull request #424 from bangerth/remove-deprecated-class-MGDoFHandler

Remove deprecated class MGDoFHandler

9 years agoFix up a change from a previous patch: use only a single thread in this test. 424/head
Wolfgang Bangerth [Mon, 12 Jan 2015 13:29:59 +0000 (07:29 -0600)]
Fix up a change from a previous patch: use only a single thread in this test.

9 years agoRemove deprecated class MGDoFHandler.
Wolfgang Bangerth [Mon, 12 Jan 2015 01:31:44 +0000 (19:31 -0600)]
Remove deprecated class MGDoFHandler.

9 years agoMerge pull request #435 from kronbichler/master
Martin Kronbichler [Tue, 13 Jan 2015 15:42:25 +0000 (16:42 +0100)]
Merge pull request #435 from kronbichler/master

Fix a bug from #432: Only do MPI::sum when MPI is initialized.

9 years agoFix a bug from #432: Only do MPI::sum when MPI is initialized. 435/head
Martin Kronbichler [Tue, 13 Jan 2015 14:40:01 +0000 (15:40 +0100)]
Fix a bug from #432: Only do MPI::sum when MPI is initialized.

9 years agoMerge pull request #434 from bangerth/fix-typo
Luca Heltai [Tue, 13 Jan 2015 13:44:48 +0000 (14:44 +0100)]
Merge pull request #434 from bangerth/fix-typo

Fix the same typo in a number of places.

9 years agoFix another set of typos. 434/head
Wolfgang Bangerth [Tue, 13 Jan 2015 13:41:14 +0000 (07:41 -0600)]
Fix another set of typos.

9 years agoFix the same typo in a number of places.
Wolfgang Bangerth [Tue, 13 Jan 2015 13:38:35 +0000 (07:38 -0600)]
Fix the same typo in a number of places.

9 years agoMerge pull request #431 from l-korous/master
Wolfgang Bangerth [Tue, 13 Jan 2015 13:13:39 +0000 (07:13 -0600)]
Merge pull request #431 from l-korous/master

Add minimal workaround for Visual Studio DoFHandler problems.

9 years agoAdd minimal workaround for Visual Studio DoFHandler problems. 431/head
Lukas Korous [Tue, 13 Jan 2015 13:04:39 +0000 (14:04 +0100)]
Add minimal workaround for Visual Studio DoFHandler problems.

9 years agoMerge pull request #432 from kronbichler/master
Wolfgang Bangerth [Tue, 13 Jan 2015 12:19:58 +0000 (06:19 -0600)]
Merge pull request #432 from kronbichler/master

Bugfix of has_ghost_elements() of parallel vector

9 years agoMerge pull request #430 from tamiko/update_changelog
Martin Kronbichler [Tue, 13 Jan 2015 11:00:03 +0000 (12:00 +0100)]
Merge pull request #430 from tamiko/update_changelog

Update changelog

9 years agoList new entry 432/head
Martin Kronbichler [Tue, 13 Jan 2015 10:32:07 +0000 (11:32 +0100)]
List new entry

9 years agoBugfix of has_ghost_elements() of parallel vector.
Martin Kronbichler [Tue, 13 Jan 2015 10:21:17 +0000 (11:21 +0100)]
Bugfix of has_ghost_elements() of parallel vector.

- The fix from PR 419 was incomplete and did not consider the case of
a ghosted vector that is copied by operator= from a non-ghosted one
(this is the standard interface for PETSc and Trilinos vectors). This
is now fixed by keeping the information in the parallel partitioner.
- Make comments in parallel vector somewhat prettier.
- Re-fill a few comments.

9 years agoUpdate changelog 430/head
Matthias Maier [Tue, 13 Jan 2015 07:58:28 +0000 (08:58 +0100)]
Update changelog

changes.h now tracks all changes after version 8.2.1.

9 years agoMerge pull request #429 from bangerth/fix-test
Martin Kronbichler [Tue, 13 Jan 2015 07:48:10 +0000 (08:48 +0100)]
Merge pull request #429 from bangerth/fix-test

Fix a test that started failing when multithreading was recently switched on inadvertantly.

9 years agoFix a test that started failing when multithreading was recently switched on inadvert... 429/head
Wolfgang Bangerth [Tue, 13 Jan 2015 04:04:06 +0000 (22:04 -0600)]
Fix a test that started failing when multithreading was recently switched on inadvertantly.

9 years agoMerge pull request #428 from tamiko/update_changelog
Wolfgang Bangerth [Mon, 12 Jan 2015 23:30:23 +0000 (17:30 -0600)]
Merge pull request #428 from tamiko/update_changelog

Take over 8.2.0-vs-8.2.1.h changelog to master branch

9 years agoProvide a 8.2.0-vs-8.2.1.h changelog 428/head
Matthias Maier [Mon, 12 Jan 2015 22:14:45 +0000 (23:14 +0100)]
Provide a 8.2.0-vs-8.2.1.h changelog

9 years agoMerge pull request #425 from tjhei/fix_step43
Timo Heister [Mon, 12 Jan 2015 20:12:26 +0000 (15:12 -0500)]
Merge pull request #425 from tjhei/fix_step43

fix step-43

MPI_InitFinalize now needs 3 args.

9 years agofix step-43 425/head
Timo Heister [Mon, 12 Jan 2015 19:28:18 +0000 (14:28 -0500)]
fix step-43

MPI_InitFinalize now needs 3 args.

9 years agoMerge pull request #423 from tjhei/bug_tril_copy_mat
Martin Kronbichler [Mon, 12 Jan 2015 18:27:00 +0000 (19:27 +0100)]
Merge pull request #423 from tjhei/bug_tril_copy_mat

[WIP] test copying Trilinos SparseMatrix

9 years agochangelog 423/head
Timo Heister [Mon, 12 Jan 2015 18:05:58 +0000 (13:05 -0500)]
changelog

9 years agofix test
Timo Heister [Mon, 12 Jan 2015 17:49:05 +0000 (12:49 -0500)]
fix test

9 years agoupdate documentation
Timo Heister [Mon, 12 Jan 2015 17:46:20 +0000 (12:46 -0500)]
update documentation

9 years agohandle self-assignment in reinit() and copy_from()
Timo Heister [Mon, 12 Jan 2015 16:38:59 +0000 (11:38 -0500)]
handle self-assignment in reinit() and copy_from()

also include a test

9 years agoadd test for reinit() and copy_from()
Timo Heister [Mon, 12 Jan 2015 16:30:29 +0000 (11:30 -0500)]
add test for reinit() and copy_from()

9 years agodisable TrilinosWrappers::SparseMatrix copy constructor and operator=
Timo Heister [Mon, 12 Jan 2015 16:29:34 +0000 (11:29 -0500)]
disable TrilinosWrappers::SparseMatrix copy constructor and operator=

9 years agoimplement PETScWrappers::MPI::SparseMatrix::reinit
Timo Heister [Mon, 12 Jan 2015 16:26:49 +0000 (11:26 -0500)]
implement PETScWrappers::MPI::SparseMatrix::reinit

9 years agotest copying Trilinos SparseMatrix
Timo Heister [Mon, 12 Jan 2015 14:20:58 +0000 (09:20 -0500)]
test copying Trilinos SparseMatrix

It looks like Trilinos is overwriting a matrix even though I am making a
copy. Test currently fails.

9 years agoMerge pull request #420 from tamiko/clean_up_config_h
Wolfgang Bangerth [Mon, 12 Jan 2015 16:04:20 +0000 (10:04 -0600)]
Merge pull request #420 from tamiko/clean_up_config_h

[RFC] Reorganize config.h.in, remove obsolete definitions

9 years agoMerge pull request #422 from luca-heltai/transition-to-manifold
Luca Heltai [Mon, 12 Jan 2015 13:51:41 +0000 (14:51 +0100)]
Merge pull request #422 from luca-heltai/transition-to-manifold

Added set_all_manifold_ids* functions to tria.

9 years agoFixed value instead of reference. 422/head
Luca Heltai [Mon, 12 Jan 2015 14:02:48 +0000 (15:02 +0100)]
Fixed value instead of reference.

9 years agoAdded set_all_* functions to tria.
Luca Heltai [Mon, 12 Jan 2015 13:31:33 +0000 (14:31 +0100)]
Added set_all_* functions to tria.

9 years agoMerge pull request #419 from kronbichler/master
Timo Heister [Mon, 12 Jan 2015 12:38:00 +0000 (07:38 -0500)]
Merge pull request #419 from kronbichler/master

Bugfix in state 'has_ghost_elements' of parallel vector.

When assigning a non-ghosted vector from another non-ghosted vector,
the state of the vector should be non-ghosted also when the partitioners
of the vectors are different.

9 years agoadd a changes.h entry 420/head
Matthias Maier [Mon, 12 Jan 2015 12:04:22 +0000 (13:04 +0100)]
add a changes.h entry

9 years agoReorganize config.h, remove obsolete definitions
Matthias Maier [Sun, 11 Jan 2015 15:23:54 +0000 (16:23 +0100)]
Reorganize config.h, remove obsolete definitions

9 years agoBugfix in state 'has_ghost_elements' of parallel vector. 419/head
Martin Kronbichler [Mon, 12 Jan 2015 09:13:41 +0000 (10:13 +0100)]
Bugfix in state 'has_ghost_elements' of parallel vector.

When assigning a non-ghosted vector from another non-ghosted vector,
the state of the vector should be non-ghosted also when the partitioners
of the vectors are different.

9 years agoMerge pull request #418 from bangerth/improve-error-message
Wolfgang Bangerth [Mon, 12 Jan 2015 03:44:18 +0000 (21:44 -0600)]
Merge pull request #418 from bangerth/improve-error-message

Use complete sentences in error messages.

9 years agoUse complete sentences in error messages. 418/head
Wolfgang Bangerth [Sun, 11 Jan 2015 20:05:54 +0000 (14:05 -0600)]
Use complete sentences in error messages.

9 years agoMerge pull request #417 from tamiko/remove_direct_mumps_interface
Wolfgang Bangerth [Sun, 11 Jan 2015 19:13:12 +0000 (13:13 -0600)]
Merge pull request #417 from tamiko/remove_direct_mumps_interface

Remove SparseDirectMUMPS interface

9 years agoUpdate documentation add news entry for mumps removal 417/head
Matthias Maier [Sun, 11 Jan 2015 14:28:52 +0000 (15:28 +0100)]
Update documentation add news entry for mumps removal

9 years agoRemove SparseDirectMUMPS
Matthias Maier [Sun, 11 Jan 2015 14:21:59 +0000 (15:21 +0100)]
Remove SparseDirectMUMPS

9 years agoTestsuite: Remove mumps related tests
Matthias Maier [Sun, 11 Jan 2015 14:16:12 +0000 (15:16 +0100)]
Testsuite: Remove mumps related tests

9 years agoCMake: Remove mumps configuration
Matthias Maier [Sun, 11 Jan 2015 14:14:03 +0000 (15:14 +0100)]
CMake: Remove mumps configuration

9 years agoMerge pull request #416 from bangerth/remove-deprecated-functions-3
Luca Heltai [Sun, 11 Jan 2015 13:13:05 +0000 (14:13 +0100)]
Merge pull request #416 from bangerth/remove-deprecated-functions-3

Remove deprecated functions 3

9 years agoMerge pull request #413 from luca-heltai/boundaryid-to-manifoldid
Luca Heltai [Sun, 11 Jan 2015 13:12:51 +0000 (14:12 +0100)]
Merge pull request #413 from luca-heltai/boundaryid-to-manifoldid

Added functions to copy boundary and material ids  to manifold ids.

9 years agoFixed comments, made second arguments const. 413/head
Luca Heltai [Sun, 11 Jan 2015 13:23:31 +0000 (14:23 +0100)]
Fixed comments, made second arguments const.

9 years agoUpdate changelog. 416/head
Wolfgang Bangerth [Fri, 9 Jan 2015 18:07:19 +0000 (12:07 -0600)]
Update changelog.

9 years agoRemove deprecated function TrilinosWrappers::*Vector*::compress with Epetra_CombineMo...
Wolfgang Bangerth [Fri, 9 Jan 2015 06:10:44 +0000 (00:10 -0600)]
Remove deprecated function TrilinosWrappers::*Vector*::compress with Epetra_CombineMode argument.

9 years agoRemove deprecated function Vector::scale.
Wolfgang Bangerth [Thu, 8 Jan 2015 22:31:41 +0000 (16:31 -0600)]
Remove deprecated function Vector::scale.

9 years agoRemove deprecated functions with names that contain cell_normal.
Wolfgang Bangerth [Thu, 8 Jan 2015 21:32:35 +0000 (15:32 -0600)]
Remove deprecated functions with names that contain cell_normal.

9 years agoRemove deprecated functions with names that contain functions_grads.
Wolfgang Bangerth [Thu, 8 Jan 2015 20:09:16 +0000 (14:09 -0600)]
Remove deprecated functions with names that contain functions_grads.

9 years agoAdded copy_material_to_manifold
Luca Heltai [Fri, 9 Jan 2015 19:33:39 +0000 (20:33 +0100)]
Added copy_material_to_manifold

9 years agoAdded copy boundary to manifold id function.
Luca Heltai [Fri, 9 Jan 2015 14:41:07 +0000 (15:41 +0100)]
Added copy boundary to manifold id function.

9 years agoMerge pull request #412 from bangerth/fix_initialization_of_mpi
Timo Heister [Fri, 9 Jan 2015 19:37:39 +0000 (14:37 -0500)]
Merge pull request #412 from bangerth/fix_initialization_of_mpi

Fix two mistakes with MPI initialization.

9 years agoFor programs that use Trilinos, we need to initialize the MPI system even if the... 412/head
Wolfgang Bangerth [Fri, 9 Jan 2015 07:26:37 +0000 (01:26 -0600)]
For programs that use Trilinos, we need to initialize the MPI system even if the program does not in fact use MPI.

9 years agoNo need to initialize MPI for a program that neither uses MPI nor Trilinos.
Wolfgang Bangerth [Fri, 9 Jan 2015 07:26:10 +0000 (01:26 -0600)]
No need to initialize MPI for a program that neither uses MPI nor Trilinos.

9 years agoAdd changelog entry.
Wolfgang Bangerth [Thu, 8 Jan 2015 18:50:30 +0000 (12:50 -0600)]
Add changelog entry.

9 years agoRemove deprecated functions with names that contain 2nd_derivative.
Wolfgang Bangerth [Thu, 8 Jan 2015 18:46:36 +0000 (12:46 -0600)]
Remove deprecated functions with names that contain 2nd_derivative.

9 years agoMerge pull request #414 from bangerth/minor-cleanup
Timo Heister [Fri, 9 Jan 2015 16:33:23 +0000 (11:33 -0500)]
Merge pull request #414 from bangerth/minor-cleanup

Fix one typo.

9 years agoFix one typo. 414/head
Wolfgang Bangerth [Fri, 9 Jan 2015 15:47:38 +0000 (09:47 -0600)]
Fix one typo.

Also improve readability slightly by aligning commands.

9 years agoMerge pull request #407 from bangerth/remove-deprecated-functions-2
Timo Heister [Fri, 9 Jan 2015 14:54:23 +0000 (09:54 -0500)]
Merge pull request #407 from bangerth/remove-deprecated-functions-2

Remove deprecated functions 2

9 years agoUpdate changelog after rebasing to master. 407/head
Wolfgang Bangerth [Thu, 8 Jan 2015 06:39:08 +0000 (00:39 -0600)]
Update changelog after rebasing to master.

9 years agoSimplify control flow.
Wolfgang Bangerth [Mon, 5 Jan 2015 15:19:53 +0000 (09:19 -0600)]
Simplify control flow.

9 years agoRemove a member variable that is never set to anything other than 'true'.
Wolfgang Bangerth [Mon, 5 Jan 2015 15:18:32 +0000 (09:18 -0600)]
Remove a member variable that is never set to anything other than 'true'.

9 years agoReintegrate do_init into constructor of MPI_InitFinalize.
Wolfgang Bangerth [Mon, 5 Jan 2015 15:17:20 +0000 (09:17 -0600)]
Reintegrate do_init into constructor of MPI_InitFinalize.

This is possible now that we have only one constructor left.

9 years agoFix a typo.
Wolfgang Bangerth [Mon, 5 Jan 2015 15:01:45 +0000 (09:01 -0600)]
Fix a typo.

9 years agoRemove deprecated function *Vector*::compress() without argument.
Wolfgang Bangerth [Mon, 5 Jan 2015 14:57:03 +0000 (08:57 -0600)]
Remove deprecated function *Vector*::compress() without argument.

9 years agoAddress and document issues with compress() in these testcases.
Wolfgang Bangerth [Tue, 6 Jan 2015 20:11:17 +0000 (14:11 -0600)]
Address and document issues with compress() in these testcases.

9 years agoRemove deprecated constructor of SparseMIC.
Wolfgang Bangerth [Mon, 5 Jan 2015 03:57:25 +0000 (21:57 -0600)]
Remove deprecated constructor of SparseMIC.

9 years agoRemove deprecated function SparseILU::apply_decomposition.
Wolfgang Bangerth [Mon, 5 Jan 2015 03:45:27 +0000 (21:45 -0600)]
Remove deprecated function SparseILU::apply_decomposition.

9 years agoRemove deprecated constructor of SparseILU.
Wolfgang Bangerth [Mon, 5 Jan 2015 00:54:13 +0000 (18:54 -0600)]
Remove deprecated constructor of SparseILU.

9 years agoRemove deprecated function Triangulation::clear_user_pointers.
Wolfgang Bangerth [Sun, 4 Jan 2015 21:38:09 +0000 (15:38 -0600)]
Remove deprecated function Triangulation::clear_user_pointers.

9 years agoRemove deprecated function Triangulation::distort_random.
Wolfgang Bangerth [Sun, 4 Jan 2015 21:37:36 +0000 (15:37 -0600)]
Remove deprecated function Triangulation::distort_random.

9 years agoRemove namespace deal_II_numbers and various outdated in namespace types.
Wolfgang Bangerth [Sun, 4 Jan 2015 21:34:29 +0000 (15:34 -0600)]
Remove namespace deal_II_numbers and various outdated in namespace types.

9 years agoRemove deprecated MPI support functions in namespace Utilities and Utilities::System.
Wolfgang Bangerth [Sun, 4 Jan 2015 21:32:12 +0000 (15:32 -0600)]
Remove deprecated MPI support functions in namespace Utilities and Utilities::System.

These functions have been available in namespace Utilities::MPI for a while already.

9 years agoRemove deprecated constructor of MPI_InitFinalize.
Wolfgang Bangerth [Sun, 4 Jan 2015 21:30:00 +0000 (15:30 -0600)]
Remove deprecated constructor of MPI_InitFinalize.

9 years agoRemove the deprecated RefinementListener approach in the Triangulation class.
Wolfgang Bangerth [Sun, 4 Jan 2015 21:27:34 +0000 (15:27 -0600)]
Remove the deprecated RefinementListener approach in the Triangulation class.

This method has been supplanted by the far more versatile signals approach.

9 years agoMerge pull request #408 from bangerth/augment-int_to_string-patch
Luca Heltai [Thu, 8 Jan 2015 16:02:12 +0000 (17:02 +0100)]
Merge pull request #408 from bangerth/augment-int_to_string-patch

Augment int to string patch


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