]>
https://gitweb.dealii.org/ - dealii.git/log
Wolfgang Bangerth [Sat, 10 Jun 2017 00:28:59 +0000 (18:28 -0600)]
Add changelog entry.
Wolfgang Bangerth [Sat, 10 Jun 2017 00:28:45 +0000 (18:28 -0600)]
Add test.
Wolfgang Bangerth [Sat, 10 Jun 2017 00:28:33 +0000 (18:28 -0600)]
Save the state of the stream we're going to write into.
David Wells [Fri, 9 Jun 2017 19:31:05 +0000 (15:31 -0400)]
Merge pull request #4495 from bangerth/const-prm-print-parameters
Make ParameterHandler::print_parameters() const.
Martin Kronbichler [Fri, 9 Jun 2017 10:58:38 +0000 (12:58 +0200)]
Merge pull request #4502 from tjhei/document_cell_id
document CellId better
Martin Kronbichler [Fri, 9 Jun 2017 09:01:02 +0000 (11:01 +0200)]
Merge pull request #4383 from drwells/dof-data-cleanup-1
DataOut_DoFData cleanup
Timo Heister [Fri, 9 Jun 2017 08:27:30 +0000 (10:27 +0200)]
document CellId better
Martin Kronbichler [Fri, 9 Jun 2017 08:12:38 +0000 (10:12 +0200)]
Merge pull request #4496 from rosskynch/IntegratedLegendreSZ
New polynomials: IntegratedLegendreSZ.
Matthias Maier [Fri, 9 Jun 2017 03:09:39 +0000 (22:09 -0500)]
Merge pull request #4501 from drwells/set-openmp-environment-variable
Set OMP_NUM_THREADS=1 in the test suite.
Ross Kynch [Thu, 8 Jun 2017 22:41:00 +0000 (23:41 +0100)]
Fixed comment spacing in header. Fixed some typos in documentation. Replaced use of pre-computed coefficients and replaced with a simple on-the-fly calculation.
David Wells [Thu, 8 Jun 2017 20:44:18 +0000 (16:44 -0400)]
Set OMP_NUM_THREADS=2 in the test suite.
Wolfgang Bangerth [Wed, 7 Jun 2017 16:02:42 +0000 (10:02 -0600)]
Add changelog entries.
Wolfgang Bangerth [Wed, 7 Jun 2017 16:02:07 +0000 (10:02 -0600)]
Make ParameterHandler::print_parameters() const.
This is done by introducing a new, private function, that duplicates most
of what the now deprecated function ParameterHandler::print_parameters_section()
does, but without changing the state of the object.
The duplication of code will be removed once the deprecated function is removed.
Daniel Arndt [Thu, 8 Jun 2017 15:56:34 +0000 (17:56 +0200)]
Merge pull request #4378 from class4kayaker/fix_initlog
Fix initlog
Daniel Arndt [Thu, 8 Jun 2017 15:55:32 +0000 (17:55 +0200)]
Merge pull request #4499 from kronbichler/fix_print_formatted
Fix FullMatrix::print_formatted for NaN entries.
Martin Kronbichler [Thu, 8 Jun 2017 13:32:06 +0000 (15:32 +0200)]
Fix FullMatrix::print_formatted for NaN entries.
Martin Kronbichler [Thu, 8 Jun 2017 10:02:42 +0000 (12:02 +0200)]
Merge pull request #4497 from tjhei/fix_abort_in_assert_parallel
try to break in gdb when Assert fails
Ross Kynch [Wed, 7 Jun 2017 21:26:29 +0000 (22:26 +0100)]
Added non-zero evaluation points to test
Jonathan Robey [Wed, 7 Jun 2017 18:11:51 +0000 (11:11 -0700)]
Fix MPI torus test
Timo Heister [Wed, 7 Jun 2017 17:26:07 +0000 (19:26 +0200)]
try to break in gdb when Assert fails
addresses #4490 (as good as we can do it), improves #4413
Ross Kynch [Tue, 30 May 2017 21:54:53 +0000 (22:54 +0100)]
Added IntegratedLegendreSZ which implements the integrated Legendre polynomials described in the PhD thesis of Sabine Zaglmayr.
Wolfgang Bangerth [Wed, 7 Jun 2017 16:07:49 +0000 (10:07 -0600)]
Merge pull request #4493 from bangerth/doc-update-2
Extend the discussion in our exception module.
Wolfgang Bangerth [Tue, 6 Jun 2017 20:40:20 +0000 (14:40 -0600)]
Better link to the exception module.
Wolfgang Bangerth [Tue, 6 Jun 2017 20:40:20 +0000 (14:40 -0600)]
Extend the discussion in our exception module.
Martin Kronbichler [Wed, 7 Jun 2017 10:42:52 +0000 (12:42 +0200)]
Merge pull request #4483 from masterleinad/fix_cylindrical_manifold
Derive CylindricalManifold from ChartManifold
Martin Kronbichler [Wed, 7 Jun 2017 06:55:10 +0000 (08:55 +0200)]
Merge pull request #4482 from masterleinad/initialiaze_all_members_trilinos
Initialize all member variables in TrilinosWrappers::MPI::Vector
Martin Kronbichler [Wed, 7 Jun 2017 06:52:44 +0000 (08:52 +0200)]
Merge pull request #4492 from bangerth/doc-update
Better explain the concept of material_ids.
Wolfgang Bangerth [Tue, 6 Jun 2017 19:23:54 +0000 (13:23 -0600)]
Merge pull request #4491 from Rombur/documentation
Update error message.
Wolfgang Bangerth [Tue, 6 Jun 2017 19:21:14 +0000 (13:21 -0600)]
Better explain the concept of material_ids.
Bruno Turcksin [Tue, 6 Jun 2017 19:12:40 +0000 (15:12 -0400)]
Update error message.
Luca Heltai [Tue, 6 Jun 2017 15:35:28 +0000 (17:35 +0200)]
Merge pull request #4489 from tjhei/document_fp_functions
document function parser functions
Daniel Arndt [Tue, 6 Jun 2017 14:53:09 +0000 (16:53 +0200)]
Ensure that all member variables are swapped
Timo Heister [Tue, 6 Jun 2017 14:08:06 +0000 (16:08 +0200)]
document function parser functions
David Wells [Tue, 6 Jun 2017 13:15:56 +0000 (09:15 -0400)]
Merge pull request #4487 from masterleinad/fixup_the_the
Fix up 'the the ' in the documentation
Daniel Arndt [Tue, 6 Jun 2017 13:14:14 +0000 (15:14 +0200)]
Move computation of normal vector into anonymous namespace
Daniel Arndt [Tue, 6 Jun 2017 11:50:56 +0000 (13:50 +0200)]
Fix up 'the the ' in the documentation
Daniel Arndt [Sat, 3 Jun 2017 22:21:50 +0000 (00:21 +0200)]
Initialize all member variables in TrilinosWrappers::MPI::Vector
Daniel Arndt [Sun, 4 Jun 2017 23:37:38 +0000 (01:37 +0200)]
Derive CylindricalManifold from ChartManifold
Wolfgang Bangerth [Mon, 5 Jun 2017 20:34:55 +0000 (14:34 -0600)]
Merge pull request #4450 from kronbichler/mapping_transform_R2U_performance
Performance improvement for MappingQ::transform_real_to_unit_cell
Martin Kronbichler [Mon, 5 Jun 2017 14:48:36 +0000 (16:48 +0200)]
Add changelog
Martin Kronbichler [Mon, 5 Jun 2017 14:45:21 +0000 (16:45 +0200)]
Add test
Martin Kronbichler [Sat, 3 Jun 2017 14:56:26 +0000 (16:56 +0200)]
Adjust output on test.
The change in the algorithm resulted in picking another cell for points exactly on the interface between two (or more) cell.s
Martin Kronbichler [Sat, 3 Jun 2017 14:51:00 +0000 (16:51 +0200)]
Fix bug in eulerian mapping regarding preservation of vertex locations
Martin Kronbichler [Sat, 3 Jun 2017 14:50:39 +0000 (16:50 +0200)]
Use cheap guess in transfinite manifold
Martin Kronbichler [Wed, 31 May 2017 10:39:07 +0000 (12:39 +0200)]
Simplify initial guess for Newton iteration of transform_real_to_unit_cell
Martin Kronbichler [Sat, 3 Jun 2017 14:39:14 +0000 (16:39 +0200)]
Introduce function real_to_unit_cell_affine_approximation.
Denis Davydov [Mon, 5 Jun 2017 04:15:30 +0000 (06:15 +0200)]
Merge pull request #4484 from drwells/fix-petsc-bool
Remove usages of the deprecated PetscBooleanType.
Denis Davydov [Mon, 5 Jun 2017 04:13:49 +0000 (06:13 +0200)]
Merge pull request #4485 from bangerth/grammar-fix
Fix grammar in cmake error messages.
Wolfgang Bangerth [Mon, 5 Jun 2017 01:30:04 +0000 (19:30 -0600)]
Fix grammar in cmake error messages.
David Wells [Sun, 4 Jun 2017 23:49:27 +0000 (19:49 -0400)]
Remove usages of the deprecated PetscBooleanType.
Followup to
db66997e97 : we should avoid using deprecated types in the library
and public headers.
David Wells [Sun, 4 Jun 2017 21:00:36 +0000 (17:00 -0400)]
Merge pull request #4477 from bangerth/deprecate-prm-handler
Deprecate ParameterHandler::print_parameters_section().
David Wells [Sun, 4 Jun 2017 19:21:29 +0000 (15:21 -0400)]
Merge pull request #4480 from kronbichler/add_mapping_test
Add test where inversion in real_to_unit_cell fails
Martin Kronbichler [Sun, 4 Jun 2017 06:50:00 +0000 (08:50 +0200)]
Merge pull request #4481 from drwells/remove-old-petsc-compatibility
Remove support for versions of PETSc before 3.3.0.
David Wells [Sat, 3 Jun 2017 19:42:35 +0000 (15:42 -0400)]
Remove support for versions of PETSc before 3.3.0.
Martin Kronbichler [Sat, 3 Jun 2017 19:45:47 +0000 (21:45 +0200)]
Merge pull request #4479 from drwells/fix-absolute-links
Make some documentation links relative.
Martin Kronbichler [Sat, 3 Jun 2017 19:40:11 +0000 (21:40 +0200)]
Add test where inversion in real_to_unit_cell fails
Daniel Arndt [Sat, 3 Jun 2017 18:45:07 +0000 (20:45 +0200)]
Merge pull request #4454 from masterleinad/remove_trilinos_vector_base
Remove TrilinosWrappers::VectorBase
David Wells [Sat, 3 Jun 2017 18:18:57 +0000 (14:18 -0400)]
Make some documentation links relative.
The other tutorial programs use relative links in these cases.
Daniel Arndt [Sat, 3 Jun 2017 16:56:48 +0000 (18:56 +0200)]
Fix up trilinos_precondition.h
Daniel Arndt [Sat, 3 Jun 2017 14:56:34 +0000 (16:56 +0200)]
Fix up blank spaces after 'operator'
Daniel Arndt [Tue, 30 May 2017 22:25:23 +0000 (00:25 +0200)]
Remove TrilinosWrappers::VectorBase
David Wells [Sat, 3 Jun 2017 16:52:11 +0000 (12:52 -0400)]
Merge pull request #4469 from bangerth/update-prm-handler
Minor cleanups in ParameterHandler.
David Wells [Sat, 3 Jun 2017 13:51:00 +0000 (09:51 -0400)]
Merge pull request #4466 from bangerth/fe-clone
Let FE::clone() return a std::unique_ptr.
Wolfgang Bangerth [Fri, 2 Jun 2017 22:06:37 +0000 (16:06 -0600)]
Add a changelog entry.
Wolfgang Bangerth [Fri, 2 Jun 2017 22:05:43 +0000 (16:05 -0600)]
Wrap comments in ParameterHandler::print_parameters_section().
Wolfgang Bangerth [Fri, 2 Jun 2017 22:05:23 +0000 (16:05 -0600)]
Deprecate ParameterHandler::print_parameters_section().
Matthias Maier [Fri, 2 Jun 2017 21:02:27 +0000 (16:02 -0500)]
Merge pull request #4475 from bangerth/fix-test
Add secondary output for one test.
Wolfgang Bangerth [Fri, 2 Jun 2017 20:34:58 +0000 (14:34 -0600)]
Add secondary output for one test.
The test takes one more or less iteration, depending on the system.
So add a secondary output.
Wolfgang Bangerth [Fri, 2 Jun 2017 19:31:28 +0000 (13:31 -0600)]
Merge pull request #4472 from kronbichler/fix_grid_tools_regularize_test
Fix GridTools::regularize_mesh test output
Martin Kronbichler [Fri, 2 Jun 2017 18:54:48 +0000 (20:54 +0200)]
Fix GridTools::regularize_mesh test output
Daniel Arndt [Fri, 2 Jun 2017 18:18:19 +0000 (20:18 +0200)]
Merge pull request #4470 from bangerth/indent
Change some indentation oddities.
Wolfgang Bangerth [Fri, 2 Jun 2017 16:32:36 +0000 (10:32 -0600)]
Change some indentation oddities.
The majority of these are related to space before comma. I did all of
this by first running astyle 3.0.1 to see what it changes, and then
running astyle 2.04 as usual again. 3.0.1 fixes up a few oddities
that 2.04 doesn't undo, and most of these are probably worthwhile
keeping.
There are some corner cases where we had purposefully aligned commas
with leading spaces, and one could consider not making this change,
or updating it by hand. But I don't feel strongly enough about
this to really go to lengths here.
Wolfgang Bangerth [Fri, 2 Jun 2017 16:14:52 +0000 (10:14 -0600)]
Remove more outdated comments.
Wolfgang Bangerth [Fri, 2 Jun 2017 16:11:52 +0000 (10:11 -0600)]
Simplify control flow a bit.
Wolfgang Bangerth [Fri, 2 Jun 2017 16:11:21 +0000 (10:11 -0600)]
Remove an outdated comment.
Wolfgang Bangerth [Fri, 2 Jun 2017 14:56:11 +0000 (08:56 -0600)]
Add changelog entry.
Daniel Arndt [Fri, 2 Jun 2017 14:03:49 +0000 (16:03 +0200)]
Merge pull request #4467 from kronbichler/fix_refinement_listeners
Adjust test to clear signal at tria destructor
David Wells [Fri, 2 Jun 2017 13:32:53 +0000 (09:32 -0400)]
Clean up some headers.
David Wells [Sat, 13 May 2017 19:56:26 +0000 (15:56 -0400)]
Split DataOut_DoFData instantiations.
Before this commit GCC needed 2.3 GB, 65s in release mode and 3.6 GB, 79s in
debug mode to compile this file. After splitting the file we need 43s/32s and
1.6 GB/1.3 GB in release mode and 52s/34s and 2.1 GB/2.0 GB in debug mode. This
is substantial because this was (previously) the most expensive file to
compile.
This also adds a few missing instantiations to the nonzero codimension case.
David Wells [Sat, 13 May 2017 17:47:04 +0000 (13:47 -0400)]
Combine four DataOut_DoFData::attach_data_vector functions.
Martin Kronbichler [Fri, 2 Jun 2017 12:02:08 +0000 (14:02 +0200)]
Adjust refinement listener to raising the clear signal at tria destructor
Martin Kronbichler [Fri, 2 Jun 2017 08:25:58 +0000 (10:25 +0200)]
Merge pull request #4356 from masterleinad/remove_deprecated_serial_trilinos_vectors
Remove deprecated serial TrilinosWrappers vectors
Martin Kronbichler [Fri, 2 Jun 2017 06:21:02 +0000 (08:21 +0200)]
Merge pull request #4463 from masterleinad/fix-explicit-instantiation-warning
Allow using VectorTools::subtract_mean_value for all distributed vector classes
Martin Kronbichler [Fri, 2 Jun 2017 06:20:22 +0000 (08:20 +0200)]
Merge pull request #4464 from kronbichler/master
Fix bug introduced in rebase of transfinite manifold commit
Wolfgang Bangerth [Thu, 1 Jun 2017 21:11:58 +0000 (15:11 -0600)]
Let FE::clone() return a std::unique_ptr.
Daniel Arndt [Thu, 1 Jun 2017 15:57:22 +0000 (17:57 +0200)]
Allow using VectorTools::subtract_mean_value for all distributed vector classes
Daniel Arndt [Thu, 1 Jun 2017 21:29:06 +0000 (23:29 +0200)]
Merge pull request #4465 from bangerth/document-minmaxavg
Better document Utilities::MPI::MinMaxAvg.
Daniel Arndt [Thu, 1 Jun 2017 16:57:12 +0000 (18:57 +0200)]
Fix documentation TrilinosWrappers::SparseMatrix
Martin Kronbichler [Thu, 1 Jun 2017 19:47:52 +0000 (21:47 +0200)]
Merge pull request #4447 from bangerth/cone-normal
Add ConeBoundary::normal_vector().
Martin Kronbichler [Thu, 1 Jun 2017 19:21:08 +0000 (21:21 +0200)]
Fix one more typo in documentation.
Wolfgang Bangerth [Thu, 1 Jun 2017 19:27:41 +0000 (13:27 -0600)]
Better document Utilities::MPI::MinMaxAvg.
Martin Kronbichler [Thu, 1 Jun 2017 19:15:57 +0000 (21:15 +0200)]
Fix bug introduced by transfinite manifold commit.
Martin Kronbichler [Thu, 1 Jun 2017 19:15:33 +0000 (21:15 +0200)]
Fix doxygen problem. Improve documentation.
Daniel Arndt [Tue, 30 May 2017 22:01:31 +0000 (00:01 +0200)]
Don't use TrilinosWrappers::VectorBase anymore
Daniel Arndt [Sat, 27 May 2017 22:40:03 +0000 (00:40 +0200)]
Fix comments in the tests to reference TrilinosWrappers::MPI::Vector
Daniel Arndt [Mon, 8 May 2017 22:04:14 +0000 (00:04 +0200)]
Add changelog entry
Daniel Arndt [Mon, 8 May 2017 21:31:16 +0000 (23:31 +0200)]
Remove deprecated serial Trilinos vectors from examples
Daniel Arndt [Mon, 8 May 2017 21:30:11 +0000 (23:30 +0200)]
Remove deprecated serial Trilinos vectors from test suite
Daniel Arndt [Mon, 8 May 2017 21:28:53 +0000 (23:28 +0200)]
Remove deprecated serial Trilinos vectors
Martin Kronbichler [Thu, 1 Jun 2017 16:38:45 +0000 (18:38 +0200)]
Merge pull request #4459 from kronbichler/fix_tria_signals
Also clear triangulation signals on destruction
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