]>
https://gitweb.dealii.org/ - dealii.git/log
Matthias Maier [Mon, 19 Jan 2015 19:28:18 +0000 (20:28 +0100)]
add a forgotten changelog entry
Matthias Maier [Mon, 19 Jan 2015 19:23:46 +0000 (20:23 +0100)]
Testsuite: Fix includes
One of the previous changes removed [...]/deal.II from the list of include
directories. Consequently, it is now mandatory to prefix all deal.II
includes with deal.II/
Matthias Maier [Mon, 19 Jan 2015 22:00:38 +0000 (23:00 +0100)]
Merge pull request #455 from tjhei/prm_kept_open_bug
fix ParameterHandler::leave_subsection and parsing
Timo Heister [Mon, 19 Jan 2015 13:07:28 +0000 (08:07 -0500)]
fix ParameterHandler::leave_subsection and parsing
- leave_subsection() had a bool return value for success that doesn't
make sense because an Assert() would never allow false to be returned.
Remove this.
- read_input() would not complain about unbalanced 'subsection'/'end' in
the input. Instead, the ParameterHandler would just stay in that
subsection and so weird error messages about undefined entries would
show up later.
- One could argue that read_input() should always start and end with an
empty subsection path, but we didn't enforce this in the past and it
might be useful to read separate files not into the "top level".
Matthias Maier [Sun, 18 Jan 2015 20:12:31 +0000 (21:12 +0100)]
Merge pull request #451 from bangerth/fix-colorization
Also colorize the edges, not just the faces, of a hypershell.
Matthias Maier [Sun, 18 Jan 2015 20:07:20 +0000 (21:07 +0100)]
Merge pull request #450 from bangerth/improve-error
Improve an error message and provide guidance.
Matthias Maier [Sun, 18 Jan 2015 20:06:49 +0000 (21:06 +0100)]
Merge pull request #453 from bangerth/fixup-image-refs
Fix up references to images.
Wolfgang Bangerth [Sun, 18 Jan 2015 20:04:43 +0000 (14:04 -0600)]
Fix up references to images.
These references were broken just before the 8.2 release by a rogue script.
Matthias Maier [Sun, 18 Jan 2015 19:11:15 +0000 (20:11 +0100)]
Merge pull request #433 from tamiko/remove_compat_feature
Remove compat feature
Matthias Maier [Tue, 13 Jan 2015 12:27:16 +0000 (13:27 +0100)]
Provide a changes.h entry
Matthias Maier [Tue, 13 Jan 2015 12:20:59 +0000 (13:20 +0100)]
Remove quirk
Matthias Maier [Tue, 13 Jan 2015 12:06:21 +0000 (13:06 +0100)]
CMake: Export Makefile compatible definitions
This commit reintroduces Make.global_options that closely mirrors the
information and layout of the CMake project configuration
deal.IIConfig.cmake.
it is intended for sourcing in Makefiles.
Matthias Maier [Mon, 12 Jan 2015 17:44:21 +0000 (18:44 +0100)]
CMake: Restructure library name creation and remove obsolete include
Matthias Maier [Sun, 11 Jan 2015 15:50:45 +0000 (16:50 +0100)]
Remove component COMPAT_FILES
Wolfgang Bangerth [Sun, 18 Jan 2015 15:21:19 +0000 (09:21 -0600)]
Merge pull request #446 from luca-heltai/transition-to-manifold-examples
Transition to manifold - Part 1 - Examples 1 to 16
Luca Heltai [Sun, 18 Jan 2015 10:31:32 +0000 (11:31 +0100)]
Addressed last two comments on step-1.
Matthias Maier [Sat, 17 Jan 2015 22:55:52 +0000 (23:55 +0100)]
Merge pull request #449 from davydden/opencascade
fix FindOPENCASCADE for OCC
Wolfgang Bangerth [Sat, 17 Jan 2015 16:33:04 +0000 (10:33 -0600)]
Also colorize the edges, not just the faces, of a hypershell.
Wolfgang Bangerth [Sat, 17 Jan 2015 16:05:10 +0000 (10:05 -0600)]
Improve an error message and provide guidance.
In response to a recent question on the mailing list.
Denis Davydov [Sat, 17 Jan 2015 08:08:38 +0000 (09:08 +0100)]
fix FindOPENCASCADE for OCC
added mac[64,32]/clang/lib and lin[64,32]/gcc/lib to path_suffixes.
Luca Heltai [Sat, 17 Jan 2015 01:41:30 +0000 (02:41 +0100)]
Fixed wolfgang comments.
Timo Heister [Fri, 16 Jan 2015 17:33:44 +0000 (12:33 -0500)]
Merge pull request #447 from bangerth/improve-readme.md
Improve wording slightly.
The existing instructions didn't make clear where the sources were located and
implicitly assumed that they are in the directory above the build
directory. This can be confusing.
(By suggestion of Joel Kulesza.)
Wolfgang Bangerth [Fri, 16 Jan 2015 14:49:18 +0000 (08:49 -0600)]
Improve wording slightly.
The existing instructions didn't make clear where the sources were located and
implicitly assumed that they are in the directory above the build
directory. This can be confusing.
(By suggestion of Joel Kulesza.)
Luca Heltai [Thu, 15 Jan 2015 21:49:35 +0000 (22:49 +0100)]
Updated changelog.
Luca Heltai [Thu, 15 Jan 2015 16:45:45 +0000 (17:45 +0100)]
Boundary->Manifold in step-16.
Luca Heltai [Thu, 15 Jan 2015 16:42:27 +0000 (17:42 +0100)]
Boundary->Manifold in step-15.
Luca Heltai [Thu, 15 Jan 2015 16:30:17 +0000 (17:30 +0100)]
Boundary->Manifold in step-11.
Luca Heltai [Thu, 15 Jan 2015 16:22:44 +0000 (17:22 +0100)]
Boundary->Manifold in step-10.
Luca Heltai [Wed, 14 Jan 2015 15:17:43 +0000 (16:17 +0100)]
Removed unnecessary header. Step-9.
Luca Heltai [Wed, 14 Jan 2015 15:16:51 +0000 (16:16 +0100)]
Removed unnecessary header. Step-8.
Luca Heltai [Wed, 14 Jan 2015 15:16:03 +0000 (16:16 +0100)]
Removed unnecessary header.
Luca Heltai [Wed, 14 Jan 2015 15:04:47 +0000 (16:04 +0100)]
Boundary->Manifold in step-6.
Luca Heltai [Wed, 14 Jan 2015 15:02:45 +0000 (16:02 +0100)]
Boundary->Manifold in step-5.
Luca Heltai [Wed, 14 Jan 2015 14:54:59 +0000 (15:54 +0100)]
Boundary->Manifold in step-2.
Luca Heltai [Mon, 12 Jan 2015 14:17:20 +0000 (15:17 +0100)]
Fixed step-1 with manifold.
Wolfgang Bangerth [Thu, 15 Jan 2015 18:55:48 +0000 (12:55 -0600)]
Merge pull request #445 from tjhei/manifold_bughunt
add flat manifold test
Timo Heister [Thu, 15 Jan 2015 15:23:56 +0000 (10:23 -0500)]
add test
This test checks that mapping quadrature points, and the computation of
shape_value, shape_gradient of FE_Q, and JxW works when applying a
MappingQ(4) inside or only on the boundary for a flat manifold.
Matthias Maier [Thu, 15 Jan 2015 15:57:06 +0000 (16:57 +0100)]
Merge pull request #444 from bangerth/update-changelog
Update changelog, as requested by Matthias.
Wolfgang Bangerth [Thu, 15 Jan 2015 15:48:48 +0000 (09:48 -0600)]
Update changelog, as requested by Matthias.
Martin Kronbichler [Thu, 15 Jan 2015 13:03:20 +0000 (14:03 +0100)]
Merge pull request #442 from bangerth/bring-back-mpi-init
Bring back the constructor of MPI_InitFinalize.
Matthias Maier [Thu, 15 Jan 2015 12:57:43 +0000 (13:57 +0100)]
Merge pull request #437 from bangerth/update-copyright-years
Some perl and shell magic.
Wolfgang Bangerth [Thu, 15 Jan 2015 12:33:18 +0000 (06:33 -0600)]
Merge pull request #443 from tjhei/comment_wrapping
Comment wrapping
Wolfgang Bangerth [Wed, 14 Jan 2015 16:27:29 +0000 (10:27 -0600)]
Ignore copyright update commits when determining the last update to a file.
Wolfgang Bangerth [Tue, 13 Jan 2015 21:14:55 +0000 (15:14 -0600)]
Update copyright years of 3488 files.
Wolfgang Bangerth [Tue, 13 Jan 2015 20:58:17 +0000 (14:58 -0600)]
Add a header to this file.
Wolfgang Bangerth [Tue, 13 Jan 2015 20:46:05 +0000 (14:46 -0600)]
Add a script that updates the copyright year of all files.
Timo Heister [Wed, 14 Jan 2015 18:18:25 +0000 (13:18 -0500)]
wrapcomments
Timo Heister [Wed, 14 Jan 2015 18:13:14 +0000 (13:13 -0500)]
fix formatting
Wolfgang Bangerth [Wed, 14 Jan 2015 17:20:57 +0000 (11:20 -0600)]
Bring back the constructor of MPI_InitFinalize.
I had removed it in a previous patch, thinking that it was deprecated,
but in fact it wasn't. Rather than undoing the change, provide the
third argument of another constructor with a default value.
Wolfgang Bangerth [Wed, 14 Jan 2015 17:13:15 +0000 (11:13 -0600)]
Merge pull request #441 from tjhei/fe_q_image_in_doc
Fix FE_Q images in documentation
Bruno Turcksin [Wed, 14 Jan 2015 17:05:25 +0000 (11:05 -0600)]
Merge pull request #440 from Rombur/FreeBSD
Update dealii::multithread_info.n_cpus for FreeBSD
Bruno Turcksin [Wed, 14 Jan 2015 16:17:45 +0000 (10:17 -0600)]
dealii::multithread_info.n_cpus returns the correct number of CPU on FreeBSD.
Timo Heister [Wed, 14 Jan 2015 16:57:56 +0000 (11:57 -0500)]
wrapcomments
Timo Heister [Wed, 14 Jan 2015 16:47:31 +0000 (11:47 -0500)]
change <img> to @image
Wolfgang Bangerth [Wed, 14 Jan 2015 00:32:14 +0000 (18:32 -0600)]
Merge pull request #438 from kronbichler/master
Check for job_supports_mpi() inside MPI Allgather functions.
Matthias Maier [Tue, 13 Jan 2015 21:54:16 +0000 (22:54 +0100)]
Merge pull request #436 from bangerth/remove-old-benchmarks
Remove old benchmarks that haven't been looked at in years.
Martin Kronbichler [Tue, 13 Jan 2015 21:39:18 +0000 (22:39 +0100)]
Check for job_supports_mpi() inside MPI Allgather functions.
MPI calls are only allowed if MPI_Init has been called. To simplify
calls to MPI::sum, MPI::max etc. and avoid putting job_supports_mpi()
around them, place this hopefully very cheap test inside the functions.
Also moved job_supports_mpi() from the namespace Utilities::System to
Utilities::MPI.
Wolfgang Bangerth [Tue, 13 Jan 2015 20:16:41 +0000 (14:16 -0600)]
Remove old benchmarks that haven't been looked at in years.
They almost certainly also don't build any more.
Wolfgang Bangerth [Tue, 13 Jan 2015 20:07:23 +0000 (14:07 -0600)]
Merge pull request #424 from bangerth/remove-deprecated-class-MGDoFHandler
Remove deprecated class MGDoFHandler
Wolfgang Bangerth [Mon, 12 Jan 2015 13:29:59 +0000 (07:29 -0600)]
Fix up a change from a previous patch: use only a single thread in this test.
Wolfgang Bangerth [Mon, 12 Jan 2015 01:31:44 +0000 (19:31 -0600)]
Remove deprecated class MGDoFHandler.
Martin Kronbichler [Tue, 13 Jan 2015 15:42:25 +0000 (16:42 +0100)]
Merge pull request #435 from kronbichler/master
Fix a bug from #432: Only do MPI::sum when MPI is initialized.
Martin Kronbichler [Tue, 13 Jan 2015 14:40:01 +0000 (15:40 +0100)]
Fix a bug from #432: Only do MPI::sum when MPI is initialized.
Luca Heltai [Tue, 13 Jan 2015 13:44:48 +0000 (14:44 +0100)]
Merge pull request #434 from bangerth/fix-typo
Fix the same typo in a number of places.
Wolfgang Bangerth [Tue, 13 Jan 2015 13:41:14 +0000 (07:41 -0600)]
Fix another set of typos.
Wolfgang Bangerth [Tue, 13 Jan 2015 13:38:35 +0000 (07:38 -0600)]
Fix the same typo in a number of places.
Wolfgang Bangerth [Tue, 13 Jan 2015 13:13:39 +0000 (07:13 -0600)]
Merge pull request #431 from l-korous/master
Add minimal workaround for Visual Studio DoFHandler problems.
Lukas Korous [Tue, 13 Jan 2015 13:04:39 +0000 (14:04 +0100)]
Add minimal workaround for Visual Studio DoFHandler problems.
Wolfgang Bangerth [Tue, 13 Jan 2015 12:19:58 +0000 (06:19 -0600)]
Merge pull request #432 from kronbichler/master
Bugfix of has_ghost_elements() of parallel vector
Martin Kronbichler [Tue, 13 Jan 2015 11:00:03 +0000 (12:00 +0100)]
Merge pull request #430 from tamiko/update_changelog
Update changelog
Martin Kronbichler [Tue, 13 Jan 2015 10:32:07 +0000 (11:32 +0100)]
List new entry
Martin Kronbichler [Tue, 13 Jan 2015 10:21:17 +0000 (11:21 +0100)]
Bugfix of has_ghost_elements() of parallel vector.
- The fix from PR 419 was incomplete and did not consider the case of
a ghosted vector that is copied by operator= from a non-ghosted one
(this is the standard interface for PETSc and Trilinos vectors). This
is now fixed by keeping the information in the parallel partitioner.
- Make comments in parallel vector somewhat prettier.
- Re-fill a few comments.
Matthias Maier [Tue, 13 Jan 2015 07:58:28 +0000 (08:58 +0100)]
Update changelog
changes.h now tracks all changes after version 8.2.1.
Martin Kronbichler [Tue, 13 Jan 2015 07:48:10 +0000 (08:48 +0100)]
Merge pull request #429 from bangerth/fix-test
Fix a test that started failing when multithreading was recently switched on inadvertantly.
Wolfgang Bangerth [Tue, 13 Jan 2015 04:04:06 +0000 (22:04 -0600)]
Fix a test that started failing when multithreading was recently switched on inadvertantly.
Wolfgang Bangerth [Mon, 12 Jan 2015 23:30:23 +0000 (17:30 -0600)]
Merge pull request #428 from tamiko/update_changelog
Take over 8.2.0-vs-8.2.1.h changelog to master branch
Matthias Maier [Mon, 12 Jan 2015 22:14:45 +0000 (23:14 +0100)]
Provide a 8.2.0-vs-8.2.1.h changelog
Timo Heister [Mon, 12 Jan 2015 20:12:26 +0000 (15:12 -0500)]
Merge pull request #425 from tjhei/fix_step43
fix step-43
MPI_InitFinalize now needs 3 args.
Timo Heister [Mon, 12 Jan 2015 19:28:18 +0000 (14:28 -0500)]
fix step-43
MPI_InitFinalize now needs 3 args.
Martin Kronbichler [Mon, 12 Jan 2015 18:27:00 +0000 (19:27 +0100)]
Merge pull request #423 from tjhei/bug_tril_copy_mat
[WIP] test copying Trilinos SparseMatrix
Timo Heister [Mon, 12 Jan 2015 18:05:58 +0000 (13:05 -0500)]
changelog
Timo Heister [Mon, 12 Jan 2015 17:49:05 +0000 (12:49 -0500)]
fix test
Timo Heister [Mon, 12 Jan 2015 17:46:20 +0000 (12:46 -0500)]
update documentation
Timo Heister [Mon, 12 Jan 2015 16:38:59 +0000 (11:38 -0500)]
handle self-assignment in reinit() and copy_from()
also include a test
Timo Heister [Mon, 12 Jan 2015 16:30:29 +0000 (11:30 -0500)]
add test for reinit() and copy_from()
Timo Heister [Mon, 12 Jan 2015 16:29:34 +0000 (11:29 -0500)]
disable TrilinosWrappers::SparseMatrix copy constructor and operator=
Timo Heister [Mon, 12 Jan 2015 16:26:49 +0000 (11:26 -0500)]
implement PETScWrappers::MPI::SparseMatrix::reinit
Timo Heister [Mon, 12 Jan 2015 14:20:58 +0000 (09:20 -0500)]
test copying Trilinos SparseMatrix
It looks like Trilinos is overwriting a matrix even though I am making a
copy. Test currently fails.
Wolfgang Bangerth [Mon, 12 Jan 2015 16:04:20 +0000 (10:04 -0600)]
Merge pull request #420 from tamiko/clean_up_config_h
[RFC] Reorganize config.h.in, remove obsolete definitions
Luca Heltai [Mon, 12 Jan 2015 13:51:41 +0000 (14:51 +0100)]
Merge pull request #422 from luca-heltai/transition-to-manifold
Added set_all_manifold_ids* functions to tria.
Luca Heltai [Mon, 12 Jan 2015 14:02:48 +0000 (15:02 +0100)]
Fixed value instead of reference.
Luca Heltai [Mon, 12 Jan 2015 13:31:33 +0000 (14:31 +0100)]
Added set_all_* functions to tria.
Timo Heister [Mon, 12 Jan 2015 12:38:00 +0000 (07:38 -0500)]
Merge pull request #419 from kronbichler/master
Bugfix in state 'has_ghost_elements' of parallel vector.
When assigning a non-ghosted vector from another non-ghosted vector,
the state of the vector should be non-ghosted also when the partitioners
of the vectors are different.
Matthias Maier [Mon, 12 Jan 2015 12:04:22 +0000 (13:04 +0100)]
add a changes.h entry
Matthias Maier [Sun, 11 Jan 2015 15:23:54 +0000 (16:23 +0100)]
Reorganize config.h, remove obsolete definitions
Martin Kronbichler [Mon, 12 Jan 2015 09:13:41 +0000 (10:13 +0100)]
Bugfix in state 'has_ghost_elements' of parallel vector.
When assigning a non-ghosted vector from another non-ghosted vector,
the state of the vector should be non-ghosted also when the partitioners
of the vectors are different.
Wolfgang Bangerth [Mon, 12 Jan 2015 03:44:18 +0000 (21:44 -0600)]
Merge pull request #418 from bangerth/improve-error-message
Use complete sentences in error messages.
Wolfgang Bangerth [Sun, 11 Jan 2015 20:05:54 +0000 (14:05 -0600)]
Use complete sentences in error messages.
Wolfgang Bangerth [Sun, 11 Jan 2015 19:13:12 +0000 (13:13 -0600)]
Merge pull request #417 from tamiko/remove_direct_mumps_interface
Remove SparseDirectMUMPS interface
Matthias Maier [Sun, 11 Jan 2015 14:28:52 +0000 (15:28 +0100)]
Update documentation add news entry for mumps removal
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