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https://gitweb.dealii.org/ - dealii.git/log
David Wells [Mon, 11 Sep 2017 02:52:54 +0000 (22:52 -0400)]
Add a changelog entry for the Manifold incompatibities.
David Wells [Mon, 11 Sep 2017 02:52:27 +0000 (22:52 -0400)]
Rename add_new_points as get_new_points.
This function no longer appends new points to a vector so a name change is in
order.
David Wells [Fri, 11 Aug 2017 04:49:22 +0000 (00:49 -0400)]
Directly create an ArrayView from a table.
David Wells [Tue, 8 Aug 2017 17:38:55 +0000 (13:38 -0400)]
Mark methods as 'override'.
David Wells [Fri, 21 Jul 2017 13:31:43 +0000 (09:31 -0400)]
Break the Manifold interface for performance.
This commit changes the interfaces of
Manifolds::get_default_points_and_weights
Manifold::project_to_manifold
Manifold::get_new_point
Manifold::add_new_points
to use ArrayView instead of std::vector. In addition, the interface of
add_new_points has been changed to populate the ArrayView argument
instead of appending to the end of the array.
This breaks the public interface of Manifold for the sake of improving
performance by about 30%: profiling indicates that, when creating a grid
with a Manifold, we spend about 30% of our time purely calling new and
delete since we must create and destroy so many std::vectors.
Timo Heister [Mon, 11 Sep 2017 14:28:55 +0000 (10:28 -0400)]
Merge pull request #5053 from tjhei/document_parallel_grid_tools
document parallel::GridTools namespace
Timo Heister [Mon, 11 Sep 2017 13:14:18 +0000 (09:14 -0400)]
document parallel::GridTools namespace
otherwise the functions won't show up in doxygen
Bruno Turcksin [Sun, 10 Sep 2017 21:51:46 +0000 (17:51 -0400)]
Merge pull request #5047 from kronbichler/improve_tensor_product_polynomials
Rewrite TensorProductPolynomials::compute for more performance
Wolfgang Bangerth [Sun, 10 Sep 2017 21:35:39 +0000 (15:35 -0600)]
Merge pull request #5051 from tjhei/doxygen_fixes
fix doxygen formatting mistakes
Timo Heister [Sun, 10 Sep 2017 16:52:34 +0000 (12:52 -0400)]
fix doxygen formatting mistakes
Martin Kronbichler [Sun, 10 Sep 2017 05:48:43 +0000 (07:48 +0200)]
Merge pull request #5050 from tjhei/fix_grid_tools_include
Fix self-inclusion in distributed/grid_tools.h
Timo Heister [Sun, 10 Sep 2017 03:03:29 +0000 (23:03 -0400)]
Fix self-inclusion in distributed/grid_tools.h
Why would you want to do that? I hope that this is the cause for doxygen not
showing the documentation of this header.
Timo Heister [Sat, 9 Sep 2017 22:18:48 +0000 (18:18 -0400)]
Merge pull request #5049 from drwells/update-windows-timer
Fix a bug in the Windows CPU time calculation.
David Wells [Sat, 9 Sep 2017 02:11:10 +0000 (22:11 -0400)]
Fix a bug in the Windows CPU time calculation.
The function GetProcessTImes() returns a value in units of 100 nanoseconds, so
we were previously off by a factor of 10.
Timo Heister [Fri, 8 Sep 2017 15:24:56 +0000 (11:24 -0400)]
Merge pull request #5048 from tjhei/fix_mesh_loop_test
fix tests/meshworker/step-11-mesh_loop
Wolfgang Bangerth [Fri, 8 Sep 2017 14:41:04 +0000 (08:41 -0600)]
Merge pull request #5005 from tamiko/fe_nedelec_bug
Fix FE_Nedelec::convert_generalized_support_point_values_to_dof_values (kind of)
Martin Kronbichler [Fri, 8 Sep 2017 07:02:25 +0000 (09:02 +0200)]
Rewrite TensorProductPolynomials::compute for more performance
Timo Heister [Fri, 8 Sep 2017 13:31:51 +0000 (09:31 -0400)]
fix tests/meshworker/step-11-mesh_loop
Martin Kronbichler [Fri, 8 Sep 2017 08:36:41 +0000 (10:36 +0200)]
Merge pull request #5032 from drwells/timer-rename-variables-2
Clean up some variable names in the Timer class.
Matthias Maier [Fri, 1 Sep 2017 03:09:55 +0000 (22:09 -0500)]
Add an interpolation test for FE_Nedelec
Matthias Maier [Fri, 1 Sep 2017 21:43:15 +0000 (16:43 -0500)]
Fix FE_Nedelec::convert_generalized_..._to_dof_values
Timo Heister [Thu, 7 Sep 2017 19:53:28 +0000 (15:53 -0400)]
Merge pull request #5046 from tamiko/refactor_fe_tools
Refactor template definitions into fe_tools_templates.h header
Matthias Maier [Thu, 7 Sep 2017 18:10:34 +0000 (13:10 -0500)]
Refactor template definitions into fe_tools_templates.h header
Martin Kronbichler [Thu, 7 Sep 2017 15:07:22 +0000 (17:07 +0200)]
Merge pull request #5025 from drwells/update-timer-examples
Update the explanations of Timer in the tutorials.
David Wells [Thu, 7 Sep 2017 13:51:18 +0000 (09:51 -0400)]
Merge pull request #5040 from davydden/vector_tool_lambdas_docu
fix VectorTools::project lambdas examples to use references
Jean-Paul Pelteret [Thu, 7 Sep 2017 11:07:36 +0000 (13:07 +0200)]
Merge pull request #5041 from koecher/doxygen-typo-QGaussChebyshev
doxygen typos of sqrt in quadrature documentation
Uwe Köcher [Thu, 7 Sep 2017 10:56:32 +0000 (12:56 +0200)]
moved the doxygen section encapsulation to include missing quadratures
Uwe Köcher [Thu, 7 Sep 2017 09:38:32 +0000 (11:38 +0200)]
doxygen typos of sqrt in quadrature documentation
Denis Davydov [Thu, 7 Sep 2017 08:39:14 +0000 (10:39 +0200)]
fix VectorTools::project lambdas examples to use references
Jean-Paul Pelteret [Thu, 7 Sep 2017 08:07:22 +0000 (10:07 +0200)]
Merge pull request #5036 from LucasCampos/correct_div
Add missing div on note on step-44
Wolfgang Bangerth [Wed, 6 Sep 2017 23:22:08 +0000 (17:22 -0600)]
Merge pull request #5038 from tjhei/step-10-warnings
fix warnings in step-10
Timo Heister [Wed, 6 Sep 2017 21:51:14 +0000 (17:51 -0400)]
grammar
Timo Heister [Wed, 6 Sep 2017 21:49:29 +0000 (17:49 -0400)]
add underscores to filenames
Timo Heister [Wed, 6 Sep 2017 21:15:03 +0000 (17:15 -0400)]
fix warnings in step-10
The clang code model in qtcreator was showing me these warnings. While
here, remove weird '0'+integer hack.
Timo Heister [Wed, 6 Sep 2017 20:41:02 +0000 (16:41 -0400)]
Merge pull request #5033 from jppelteret/quick_tests
Add a quick test for Adol-C.
Wolfgang Bangerth [Wed, 6 Sep 2017 17:02:38 +0000 (11:02 -0600)]
Merge pull request #5031 from tjhei/mesh_loop_cells_last
mesh_loop: replace cells_first by cells_after_faces
Lucas Campos [Wed, 6 Sep 2017 15:48:48 +0000 (17:48 +0200)]
Add missing div on note on step-44
David Wells [Wed, 6 Sep 2017 13:25:30 +0000 (09:25 -0400)]
Merge pull request #5030 from drwells/iota-argument-type
Use the right types for iota and accumulate.
David Wells [Wed, 6 Sep 2017 13:23:29 +0000 (09:23 -0400)]
Merge pull request #5034 from bangerth/fix-formatting
Fix formatting of a piece of example code.
Wolfgang Bangerth [Wed, 6 Sep 2017 13:14:09 +0000 (07:14 -0600)]
Fix formatting of a piece of example code.
Bruno Turcksin [Wed, 6 Sep 2017 13:04:43 +0000 (09:04 -0400)]
Merge pull request #5015 from tjhei/readwritevector_view1
New ReadWriteVector::reinit(TrilinosWrappers::MPI::Vector)
Jean-Paul Pelteret [Wed, 6 Sep 2017 10:18:30 +0000 (12:18 +0200)]
Fix the nanoflann quick-test.
Jean-Paul Pelteret [Wed, 6 Sep 2017 10:09:50 +0000 (12:09 +0200)]
Add a quick test for Adol-C.
Jean-Paul Pelteret [Wed, 6 Sep 2017 09:00:21 +0000 (11:00 +0200)]
Merge pull request #4997 from bangerth/data-postprocessor-tensor
Add DataPostprocessorTensor
David Wells [Tue, 5 Sep 2017 21:36:08 +0000 (17:36 -0400)]
Clean up some variable names in the Timer class.
This is compatible with 8.5 but not with some previous patches to this class
made since then.
Timo Heister [Tue, 5 Sep 2017 19:16:54 +0000 (15:16 -0400)]
fix test output
Timo Heister [Tue, 5 Sep 2017 18:51:46 +0000 (14:51 -0400)]
mesh_loop: replace cells_first by cells_after_faces
David Wells [Tue, 5 Sep 2017 19:31:37 +0000 (15:31 -0400)]
Use the right types for iota and accumulate.
Matthias Maier [Tue, 5 Sep 2017 19:23:30 +0000 (14:23 -0500)]
Merge pull request #5029 from bangerth/fix-test
Fix test.
Wolfgang Bangerth [Tue, 5 Sep 2017 19:13:54 +0000 (13:13 -0600)]
Fix a test.
Timo Heister [Tue, 5 Sep 2017 18:45:16 +0000 (14:45 -0400)]
Merge pull request #5022 from drwells/timer-clear-mpi-data
Clean up initialization of MinMaxAvg values.
Timo Heister [Sun, 3 Sep 2017 18:52:54 +0000 (14:52 -0400)]
New ReadWriteVector::reinit(TrilinosWrappers::MPI::Vector)
Let a ReadWriteVector be a view for a (potentially ghosted)
TrilinosWrappers::MPI::Vector. This is the first step towards using RWV
inside the library.
Wolfgang Bangerth [Thu, 31 Aug 2017 19:51:44 +0000 (13:51 -0600)]
Use automatic tensor unrolling instead of doing it by hand.
Also mention the possibility of computing stresses.
Wolfgang Bangerth [Tue, 5 Sep 2017 18:22:52 +0000 (12:22 -0600)]
Merge pull request #5024 from drwells/require-boost-1.59
Require boost 1.59
Wolfgang Bangerth [Tue, 5 Sep 2017 18:21:59 +0000 (12:21 -0600)]
Merge pull request #5014 from tjhei/parallel_vec_print
ReadWriteVector and TrilinosWrappers::MPI::Vector print in parallel
Timo Heister [Tue, 5 Sep 2017 16:33:01 +0000 (12:33 -0400)]
Merge pull request #5028 from luca-heltai/quick-tests
Nanoflann quicktest.
Luca Heltai [Tue, 5 Sep 2017 14:50:06 +0000 (16:50 +0200)]
Added quicktest for nanoflann.
Luca Heltai [Tue, 5 Sep 2017 14:45:07 +0000 (16:45 +0200)]
Fixed gls and lapack tests on mac.
Daniel Arndt [Tue, 5 Sep 2017 14:43:58 +0000 (16:43 +0200)]
Merge pull request #4996 from eldarkh/hp-RTNodal-FENothing
Support for RTNodal and FENothing in hp::FECollection
Timo Heister [Tue, 5 Sep 2017 14:23:45 +0000 (10:23 -0400)]
make 64bit compatible
David Wells [Tue, 5 Sep 2017 00:23:32 +0000 (20:23 -0400)]
Merge pull request #5023 from davydden/lapack_support
minor cleanup of LAPACKSupport
Bruno Turcksin [Tue, 5 Sep 2017 00:16:26 +0000 (20:16 -0400)]
Merge pull request #4998 from tjhei/epetra_to_rwr
do not allow import from ghosted TrilinosWrappers to ReadWriteVector
David Wells [Mon, 4 Sep 2017 23:29:38 +0000 (19:29 -0400)]
Update the explanations of Timer in the tutorials.
Denis Davydov [Mon, 4 Sep 2017 21:56:45 +0000 (23:56 +0200)]
add a changelog
David Wells [Mon, 4 Sep 2017 21:26:35 +0000 (17:26 -0400)]
Use boost's small_vector in a few places.
This class allows us to simplify some logic where we previously switched
between stack-allocated built-in arrays and std::vectors; now we can
just use the object's internal buffer in most cases, but if
dofs_per_cell or indices.size() is large enough we will allocate a big
enough buffer.
David Wells [Mon, 4 Sep 2017 21:00:58 +0000 (17:00 -0400)]
Require boost 1.59 or newer.
This enables us to use the relatively new boost::container::small_vector
class.
Denis Davydov [Mon, 4 Sep 2017 20:41:18 +0000 (22:41 +0200)]
minor cleanup of LAPACKSupport
David Wells [Mon, 4 Sep 2017 17:17:32 +0000 (13:17 -0400)]
Merge pull request #5016 from davydden/mpi_summ_full_matrix
add Utilities::MPI::sum() for FullMatrix objects
David Wells [Mon, 4 Sep 2017 17:13:42 +0000 (13:13 -0400)]
Clean up initialization of MinMaxAvg values.
David Wells [Mon, 4 Sep 2017 16:16:12 +0000 (12:16 -0400)]
Merge pull request #4987 from bangerth/fix-naming-issues
Convert more places to VectorMemory::Pointer.
Denis Davydov [Mon, 4 Sep 2017 15:02:48 +0000 (17:02 +0200)]
add a test with complex<double>
Denis Davydov [Mon, 4 Sep 2017 10:28:23 +0000 (12:28 +0200)]
add Utilities::MPI::sum() for FullMatrix objects
Timo Heister [Sun, 3 Sep 2017 19:19:13 +0000 (15:19 -0400)]
update test output
Timo Heister [Sun, 3 Sep 2017 19:09:41 +0000 (15:09 -0400)]
ReadWriteVector and TrilinosWrappers::MPI::Vector print in parallel
Print index and value for ::print() of ReadWriteVector and
TrilinosWrappers::MPI::Vector.
Martin Kronbichler [Sat, 2 Sep 2017 19:50:26 +0000 (21:50 +0200)]
Merge pull request #5013 from masterleinad/reorthogonalization_signal_gmres
Introduce SolverGMRES::connect_re_orthogonalization_slot
Daniel Arndt [Sat, 2 Sep 2017 13:50:17 +0000 (15:50 +0200)]
Changelog entry
Daniel Arndt [Sat, 2 Sep 2017 13:49:51 +0000 (15:49 +0200)]
Update tests
Daniel Arndt [Sat, 2 Sep 2017 13:48:40 +0000 (15:48 +0200)]
Add a slot for notification about re-orthogonalization in SolverGMRES
Timo Heister [Thu, 31 Aug 2017 19:52:11 +0000 (15:52 -0400)]
Catch ReadWriteVector::import errors from Trilinos
- check return value of Epetra import
- document that ghosted vectors are not allowed
- add test for that
- cleanup
Wolfgang Bangerth [Fri, 1 Sep 2017 22:41:04 +0000 (16:41 -0600)]
Merge pull request #4999 from tamiko/fix_support_point_to_dof_values
Fix FESystem::convert_generalized_support_point_values_to_dof_values
Wolfgang Bangerth [Thu, 31 Aug 2017 00:42:44 +0000 (18:42 -0600)]
New test.
Wolfgang Bangerth [Thu, 31 Aug 2017 00:27:57 +0000 (18:27 -0600)]
Add a changelog entry.
Wolfgang Bangerth [Thu, 31 Aug 2017 00:27:33 +0000 (18:27 -0600)]
Add DataPostprocessorTensor along with documentation.
Matthias Maier [Fri, 1 Sep 2017 19:50:43 +0000 (14:50 -0500)]
Merge pull request #5010 from tamiko/revert_test
Revert "Relax lac/gmres_reorthogonalize_01"
Matthias Maier [Fri, 1 Sep 2017 19:49:59 +0000 (14:49 -0500)]
Revert "Relax lac/gmres_reorthogonalize_01"
This reverts commit
b9cff2610fe93494eebef7c775fd0667b743ecf7 .
Matthias Maier [Fri, 1 Sep 2017 02:26:34 +0000 (21:26 -0500)]
add a test
Matthias Maier [Thu, 31 Aug 2017 22:19:50 +0000 (17:19 -0500)]
Avoid memory reallocation
Matthias Maier [Thu, 31 Aug 2017 21:15:59 +0000 (16:15 -0500)]
Doc: update news items
Matthias Maier [Thu, 31 Aug 2017 21:09:26 +0000 (16:09 -0500)]
Tests: Update fe/interpolate_system
Well, now one has to use generalized support points ;-)
Matthias Maier [Thu, 31 Aug 2017 21:04:05 +0000 (16:04 -0500)]
Fix FESystem::convert_generalized_support_point_values_to_dof_values
Use generalized_support_points_index_table to correctly convert
generalized support point values to dof values.
Matthias Maier [Thu, 31 Aug 2017 19:32:34 +0000 (14:32 -0500)]
Unify index name with later code, base_el -> base
Luca Heltai [Tue, 15 Aug 2017 16:20:58 +0000 (10:20 -0600)]
Renamed convert_gen_sup_val_to_nodal_val to ..._dof_values
Matthias Maier [Fri, 1 Sep 2017 17:55:27 +0000 (12:55 -0500)]
Merge pull request #5000 from bangerth/patch-0
Specialize DataOutBase::Patch for dim==0.
Matthias Maier [Fri, 1 Sep 2017 17:50:40 +0000 (12:50 -0500)]
Merge pull request #5008 from masterleinad/relax_gmres_reorthogonalize
Relax lac/gmres_reorthogonalize_01
Matthias Maier [Fri, 1 Sep 2017 17:50:18 +0000 (12:50 -0500)]
Merge pull request #5007 from masterleinad/clear_threadlocalstorage
Clear data in ThreadLocalStorage also when not using threads
Daniel Arndt [Fri, 1 Sep 2017 13:39:18 +0000 (15:39 +0200)]
Relax lac/gmres_reorthogonalize_01
Daniel Arndt [Fri, 1 Sep 2017 13:05:46 +0000 (15:05 +0200)]
Clear data in ThreadLocalStorage also when not using threads
David Wells [Fri, 1 Sep 2017 12:36:07 +0000 (08:36 -0400)]
Merge pull request #5006 from masterleinad/fix_clang_tests
Fix two tests failing for clang
Daniel Arndt [Fri, 1 Sep 2017 09:21:49 +0000 (11:21 +0200)]
Explicitly specify template arguments in fe/fe_system_generalized_support_points
Daniel Arndt [Fri, 1 Sep 2017 09:16:59 +0000 (11:16 +0200)]
clang alternative output for lac/vector_memory
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