]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
6 years agoUse numbers comparators in physics standard tensor functions 6349/head
Jean-Paul Pelteret [Sun, 29 Apr 2018 09:20:20 +0000 (11:20 +0200)]
Use numbers comparators in physics standard tensor functions

6 years agoAdd some specialized functions to Adol-C numbers
Jean-Paul Pelteret [Sun, 29 Apr 2018 09:17:58 +0000 (11:17 +0200)]
Add some specialized functions to Adol-C numbers

6 years agoAdd a header to numbers.h to satisfy the testsuite
Jean-Paul Pelteret [Sun, 29 Apr 2018 09:09:04 +0000 (11:09 +0200)]
Add a header to numbers.h to satisfy the testsuite

6 years agoAdd more comparators in numbers.h
Jean-Paul Pelteret [Sun, 29 Apr 2018 08:48:42 +0000 (10:48 +0200)]
Add more comparators in numbers.h

Add a test for the comparators as well

6 years agoAdol-C advanced branching: Fix SymmetricTensor
Jean-Paul Pelteret [Fri, 27 Apr 2018 00:47:02 +0000 (02:47 +0200)]
Adol-C advanced branching: Fix SymmetricTensor

6 years agoAdol-C advanced branching: Fix Tensor
Jean-Paul Pelteret [Fri, 27 Apr 2018 00:46:39 +0000 (02:46 +0200)]
Adol-C advanced branching: Fix Tensor

6 years agoAdd more helper functions to number.h
Jean-Paul Pelteret [Fri, 27 Apr 2018 00:45:51 +0000 (02:45 +0200)]
Add more helper functions to number.h

6 years agoAdd an Adol-C related exception
Jean-Paul Pelteret [Fri, 27 Apr 2018 16:20:42 +0000 (18:20 +0200)]
Add an Adol-C related exception

6 years agoRemove unnecessary headers
Jean-Paul Pelteret [Thu, 26 Apr 2018 23:23:55 +0000 (01:23 +0200)]
Remove unnecessary headers

6 years agoAdol-C advanced branching: Fix FEValues
Jean-Paul Pelteret [Thu, 26 Apr 2018 22:52:14 +0000 (00:52 +0200)]
Adol-C advanced branching: Fix FEValues

6 years agoMerge pull request #6347 from jppelteret/follow_up_to_6335
Matthias Maier [Thu, 26 Apr 2018 17:53:21 +0000 (12:53 -0500)]
Merge pull request #6347 from jppelteret/follow_up_to_6335

CMake: Add missing boost headers to AdolC module

6 years agoMerge pull request #6345 from tamiko/cppcheck
Martin Kronbichler [Thu, 26 Apr 2018 17:48:23 +0000 (19:48 +0200)]
Merge pull request #6345 from tamiko/cppcheck

Bugfix: Close #ifdef at the right point

6 years agoCMake: Add missing boost headers to AdolC module 6347/head
Jean-Paul Pelteret [Thu, 26 Apr 2018 17:45:15 +0000 (19:45 +0200)]
CMake: Add missing boost headers to AdolC module

6 years agoMerge pull request #6335 from tamiko/fix_adolc_test
Jean-Paul Pelteret [Thu, 26 Apr 2018 17:24:42 +0000 (19:24 +0200)]
Merge pull request #6335 from tamiko/fix_adolc_test

CMake: Link in Boost libraries for ADOLc check

6 years agoBugfix: Close #ifdef at the right point 6345/head
Matthias Maier [Thu, 26 Apr 2018 16:59:44 +0000 (11:59 -0500)]
Bugfix: Close #ifdef at the right point

This was found by cppcheck that rightfully complains about the #endif
statement closing at the wrong position.

6 years agoMerge pull request #6340 from drwells/update-copyright-notices-2
Luca Heltai [Thu, 26 Apr 2018 15:06:10 +0000 (17:06 +0200)]
Merge pull request #6340 from drwells/update-copyright-notices-2

Update copyright notices 2

6 years agoMerge pull request #6290 from GivAlz/fix_distributed_cpt_loc
Martin Kronbichler [Thu, 26 Apr 2018 15:04:13 +0000 (17:04 +0200)]
Merge pull request #6290 from GivAlz/fix_distributed_cpt_loc

Fixed distributed cpt locations return tuple and added test

6 years agoCMake: simplify check 6335/head
Matthias Maier [Wed, 25 Apr 2018 20:44:52 +0000 (15:44 -0500)]
CMake: simplify check

6 years agoCMake: Add boost and adolc compatibility check
Matthias Maier [Wed, 25 Apr 2018 20:41:00 +0000 (15:41 -0500)]
CMake: Add boost and adolc compatibility check

Make sure to only ever use an external ADOL-C library (that uses the
Boost pool allocator and is linked against external boost) if deal.II is
also configured with external Boost.

6 years agoCMake: Let FindADOLC.cmake check whether adolc uses Boost pool allocator
Matthias Maier [Wed, 25 Apr 2018 20:23:17 +0000 (15:23 -0500)]
CMake: Let FindADOLC.cmake check whether adolc uses Boost pool allocator

Let the find module check whether adolc uses the Boost pool allocator.
If yes, add all boost libraries to the link interface.

6 years agoCMake: add a safeguard
Matthias Maier [Wed, 25 Apr 2018 18:14:49 +0000 (13:14 -0500)]
CMake: add a safeguard

6 years agoCMake: run boost configure before adolc configure
Matthias Maier [Wed, 25 Apr 2018 18:12:50 +0000 (13:12 -0500)]
CMake: run boost configure before adolc configure

6 years agoMerge pull request #6341 from masterleinad/fix_subscribe_move
Martin Kronbichler [Thu, 26 Apr 2018 11:45:13 +0000 (13:45 +0200)]
Merge pull request #6341 from masterleinad/fix_subscribe_move

Only run assign_subscriptor in Debug mode

6 years agoOnly run assign_subscriptor in Debug mode 6341/head
Daniel Arndt [Thu, 26 Apr 2018 08:16:32 +0000 (10:16 +0200)]
Only run assign_subscriptor in Debug mode

6 years agoMerge pull request #6337 from drwells/update-gridgenerator-examples-3
Denis Davydov [Thu, 26 Apr 2018 07:51:19 +0000 (09:51 +0200)]
Merge pull request #6337 from drwells/update-gridgenerator-examples-3

Update gridgenerator examples 3

6 years agoUpdate step-15 results. 6337/head
David Wells [Wed, 25 Apr 2018 20:20:39 +0000 (16:20 -0400)]
Update step-15 results.

6 years agoUse VTU output in step-15.
David Wells [Wed, 25 Apr 2018 20:16:27 +0000 (16:16 -0400)]
Use VTU output in step-15.

6 years agoMerge pull request #6333 from masterleinad/fix_subscribe_move
David Wells [Thu, 26 Apr 2018 03:17:16 +0000 (23:17 -0400)]
Merge pull request #6333 from masterleinad/fix_subscribe_move

Check own subscriptions when assigning in Subscriptor

6 years agoReformat some copyright headers. 6340/head
David Wells [Thu, 26 Apr 2018 02:12:56 +0000 (22:12 -0400)]
Reformat some copyright headers.

6 years agoReassign copyright from mathlab to deal.II.
David Wells [Thu, 26 Apr 2018 02:12:32 +0000 (22:12 -0400)]
Reassign copyright from mathlab to deal.II.

Done with the permission of Luca Heltai.

6 years agoMerge pull request #6331 from tjhei/update_copyright
David Wells [Thu, 26 Apr 2018 01:55:28 +0000 (21:55 -0400)]
Merge pull request #6331 from tjhei/update_copyright

update copyright years

6 years agoMerge pull request #6304 from drwells/update-gridgenerator-examples-2
Bruno Turcksin [Wed, 25 Apr 2018 21:23:32 +0000 (17:23 -0400)]
Merge pull request #6304 from drwells/update-gridgenerator-examples-2

Update gridgenerator examples 2

6 years agoChange step-10 to use FE_Nothing. 6304/head
David Wells [Sun, 22 Apr 2018 23:46:05 +0000 (19:46 -0400)]
Change step-10 to use FE_Nothing.

6 years agoUpdate step-10 for 9.0.
David Wells [Sun, 22 Apr 2018 23:44:43 +0000 (19:44 -0400)]
Update step-10 for 9.0.

This commit changes the output (which was altered as a result of the new
TFI scheme for placing new vertices) and the manifold handling (which
was altered by the 'attach default manifolds to triangulations' change
in GridGenerator).

6 years agoMerge pull request #6338 from drwells/update-gridgenerator-examples-4
Wolfgang Bangerth [Wed, 25 Apr 2018 21:12:44 +0000 (15:12 -0600)]
Merge pull request #6338 from drwells/update-gridgenerator-examples-4

Update GridGenerator examples 4

6 years agoMerge pull request #6310 from kronbichler/matrix_free_module
Bruno Turcksin [Wed, 25 Apr 2018 21:08:41 +0000 (17:08 -0400)]
Merge pull request #6310 from kronbichler/matrix_free_module

Matrix free module

6 years agoUpdate step-11. 6338/head
David Wells [Wed, 25 Apr 2018 20:28:45 +0000 (16:28 -0400)]
Update step-11.

There is no graphical output for this step so this is easy.

6 years agoMerge pull request #6324 from kronbichler/fix_compile_warning
Martin Kronbichler [Wed, 25 Apr 2018 18:53:23 +0000 (20:53 +0200)]
Merge pull request #6324 from kronbichler/fix_compile_warning

Fix warning about missing return statement in ICC

6 years agoCheck own subscriptions when assigning in Subscriptor 6333/head
Daniel Arndt [Wed, 25 Apr 2018 16:51:28 +0000 (18:51 +0200)]
Check own subscriptions when assigning in Subscriptor

6 years agoupdate copyright years 6331/head
Timo Heister [Wed, 25 Apr 2018 14:34:37 +0000 (10:34 -0400)]
update copyright years

6 years agoMerge pull request #6292 from masterleinad/fix_coverity_issues
Timo Heister [Wed, 25 Apr 2018 14:33:58 +0000 (10:33 -0400)]
Merge pull request #6292 from masterleinad/fix_coverity_issues

Fix various issues reported by coverity

6 years agoMerge pull request #6321 from masterleinad/add_codecov_support
Matthias Maier [Wed, 25 Apr 2018 13:57:19 +0000 (08:57 -0500)]
Merge pull request #6321 from masterleinad/add_codecov_support

Add Codecov support

6 years agoMerge pull request #6327 from masterleinad/fix_typo_dof_handler
Martin Kronbichler [Wed, 25 Apr 2018 11:43:27 +0000 (13:43 +0200)]
Merge pull request #6327 from masterleinad/fix_typo_dof_handler

Replace DofHandler by DoFHandler

6 years agoReplace DofHandler by DoFHandler 6327/head
Daniel Arndt [Wed, 25 Apr 2018 11:12:35 +0000 (13:12 +0200)]
Replace DofHandler by DoFHandler

6 years agoUpdate documentation 6321/head
Daniel Arndt [Wed, 25 Apr 2018 10:11:06 +0000 (12:11 +0200)]
Update documentation

6 years agoRequire codecov-bash to be downloaded manually
Daniel Arndt [Wed, 25 Apr 2018 09:23:07 +0000 (11:23 +0200)]
Require codecov-bash to be downloaded manually

6 years agoFix warning about missing return statement in ICC. 6324/head
Martin Kronbichler [Wed, 25 Apr 2018 08:57:36 +0000 (10:57 +0200)]
Fix warning about missing return statement in ICC.

6 years agoLink main matrix-free objects and data structures to module. 6310/head
Martin Kronbichler [Tue, 24 Apr 2018 13:24:46 +0000 (15:24 +0200)]
Link main matrix-free objects and data structures to module.

6 years agoWrite doxygen module for MatrixFree with face capabilities.
Martin Kronbichler [Tue, 24 Apr 2018 13:24:21 +0000 (15:24 +0200)]
Write doxygen module for MatrixFree with face capabilities.

6 years agoMerge pull request #6285 from kkormann/issue_5667_fe_eval_template
Martin Kronbichler [Wed, 25 Apr 2018 07:02:02 +0000 (09:02 +0200)]
Merge pull request #6285 from kkormann/issue_5667_fe_eval_template

Introduce face functionality to fe_evaluation.

6 years agoMerge pull request #6323 from bangerth/typo
Denis Davydov [Wed, 25 Apr 2018 04:58:12 +0000 (06:58 +0200)]
Merge pull request #6323 from bangerth/typo

Fix a grammar mistake.

6 years agoMerge pull request #6322 from masterleinad/fix_petsc_instantiation
Wolfgang Bangerth [Wed, 25 Apr 2018 03:54:29 +0000 (21:54 -0600)]
Merge pull request #6322 from masterleinad/fix_petsc_instantiation

Instantiate distribute_local_to_global for another combination of PETScWrapper objects

6 years agoFix a grammar mistake. 6323/head
Wolfgang Bangerth [Wed, 25 Apr 2018 03:36:07 +0000 (21:36 -0600)]
Fix a grammar mistake.

6 years agoMerge pull request #6305 from masterleinad/object_fe_collection_dh
Wolfgang Bangerth [Tue, 24 Apr 2018 23:37:29 +0000 (17:37 -0600)]
Merge pull request #6305 from masterleinad/object_fe_collection_dh

Store the FECollection object and not just the pointer in DoFHandler and hp::DoFHandler

6 years agoInstantiate distribute_local_to_global for another combination of PETScWrapper objects 6322/head
Daniel Arndt [Tue, 24 Apr 2018 22:33:13 +0000 (00:33 +0200)]
Instantiate distribute_local_to_global for another combination of PETScWrapper objects

6 years agoAdd codecov support
Daniel Arndt [Tue, 24 Apr 2018 14:58:50 +0000 (16:58 +0200)]
Add codecov support

6 years agoMerge pull request #6320 from tjhei/doxygen_fixes2
Denis Davydov [Tue, 24 Apr 2018 20:44:24 +0000 (22:44 +0200)]
Merge pull request #6320 from tjhei/doxygen_fixes2

more doxygen fixes

6 years agomore doxygen fixes 6320/head
Timo Heister [Tue, 24 Apr 2018 20:41:23 +0000 (16:41 -0400)]
more doxygen fixes

6 years agoMerge pull request #6319 from tjhei/doxygen_fixes
Denis Davydov [Tue, 24 Apr 2018 20:32:48 +0000 (22:32 +0200)]
Merge pull request #6319 from tjhei/doxygen_fixes

doxygen fixes

6 years agodoxygen fixes 6319/head
Timo Heister [Tue, 24 Apr 2018 20:27:50 +0000 (16:27 -0400)]
doxygen fixes

warnings/errors that appear during doxygen generation

6 years agoIntroduce face functionality to fe_evaluation. 6285/head
Katharina Kormann [Fri, 20 Apr 2018 19:15:43 +0000 (21:15 +0200)]
Introduce face functionality to fe_evaluation.

Distinguish cell and face type by new template argument.

6 years agoMerge pull request #6318 from tjhei/doxygen_formatting2
Matthias Maier [Tue, 24 Apr 2018 19:57:02 +0000 (14:57 -0500)]
Merge pull request #6318 from tjhei/doxygen_formatting2

fix some ugly doxygen formatting

6 years agofix some ugly doxygen formatting 6318/head
Timo Heister [Tue, 24 Apr 2018 19:49:37 +0000 (15:49 -0400)]
fix some ugly doxygen formatting

6 years agoMerge pull request #6315 from masterleinad/less_iterations_complex_solver
Matthias Maier [Tue, 24 Apr 2018 18:40:53 +0000 (13:40 -0500)]
Merge pull request #6315 from masterleinad/less_iterations_complex_solver

Allow less iterations in petsc_complex/solver_real_02

6 years agoMerge pull request #6316 from tjhei/doxygen_formatting
Matthias Maier [Tue, 24 Apr 2018 18:19:17 +0000 (13:19 -0500)]
Merge pull request #6316 from tjhei/doxygen_formatting

Doxygen formatting

6 years agoMerge pull request #6317 from tjhei/doxygen_add_rol
Denis Davydov [Tue, 24 Apr 2018 18:03:39 +0000 (20:03 +0200)]
Merge pull request #6317 from tjhei/doxygen_add_rol

enable ROL in doxygen

6 years agoenable ROL in doxygen 6317/head
Timo Heister [Tue, 24 Apr 2018 17:45:03 +0000 (13:45 -0400)]
enable ROL in doxygen

otherwise rol namespace will not be in the documentation

6 years agoput @ref on separate lines 6316/head
Timo Heister [Tue, 24 Apr 2018 17:43:34 +0000 (13:43 -0400)]
put @ref on separate lines

6 years agofix doxygen group sections
Timo Heister [Tue, 24 Apr 2018 17:42:37 +0000 (13:42 -0400)]
fix doxygen group sections

6 years agoAllow less iterations in petsc_complex/solver_real_02 6315/head
Daniel Arndt [Tue, 24 Apr 2018 15:58:18 +0000 (17:58 +0200)]
Allow less iterations in petsc_complex/solver_real_02

6 years agoRemove parameter names for defaulted member functions 6305/head
Daniel Arndt [Tue, 24 Apr 2018 15:53:16 +0000 (17:53 +0200)]
Remove parameter names for defaulted member functions

6 years agoMerge pull request #6313 from masterleinad/capitalize_gmsh
Matthias Maier [Tue, 24 Apr 2018 14:26:57 +0000 (09:26 -0500)]
Merge pull request #6313 from masterleinad/capitalize_gmsh

Capitalize Gmsh appropriately

6 years agoCapitalize Gmsh appropriately 6313/head
Daniel Arndt [Tue, 24 Apr 2018 14:19:36 +0000 (16:19 +0200)]
Capitalize Gmsh appropriately

6 years agoMerge pull request #6309 from masterleinad/fix_cuda
Bruno Turcksin [Tue, 24 Apr 2018 12:09:02 +0000 (08:09 -0400)]
Merge pull request #6309 from masterleinad/fix_cuda

Fix failing CUDA test

6 years agoAdd assertion for nonempty hp::FECollection
Daniel Arndt [Tue, 24 Apr 2018 00:30:40 +0000 (02:30 +0200)]
Add assertion for nonempty hp::FECollection

6 years agoFix failing CUDA test 6309/head
Daniel Arndt [Tue, 24 Apr 2018 09:59:16 +0000 (11:59 +0200)]
Fix failing CUDA test

6 years agoMerge pull request #6295 from luca-heltai/minmax-diameter-with-mapping
Martin Kronbichler [Tue, 24 Apr 2018 09:04:37 +0000 (11:04 +0200)]
Merge pull request #6295 from luca-heltai/minmax-diameter-with-mapping

Min/Max diameter with mapping

6 years agoMerge pull request #6302 from tamiko/fix_a_test_16
Denis Davydov [Tue, 24 Apr 2018 06:48:36 +0000 (08:48 +0200)]
Merge pull request #6302 from tamiko/fix_a_test_16

Tests: metis/metis_05 add output variant

6 years agoMerge pull request #6308 from tamiko/cmake_würgaround
Denis Davydov [Tue, 24 Apr 2018 04:59:57 +0000 (06:59 +0200)]
Merge pull request #6308 from tamiko/cmake_würgaround

CMake: Ensure to be compatible with version 3.11 FindBlas.cmake

6 years agoCMake: Ensure to be compatible with version 3.11 FindBlas.cmake 6308/head
Matthias Maier [Tue, 24 Apr 2018 04:17:47 +0000 (23:17 -0500)]
CMake: Ensure to be compatible with version 3.11 FindBlas.cmake

We have to work around some upstream changes [1] that break our project
configuration. Let's simply filter out the "PkgConfig::PKGC_BLAS" string
and hope for the best.

[1] https://gitlab.kitware.com/cmake/cmake/issues/17934

6 years agoStore the FECollection object and not just the pointer in DoFHandler and hp::DoFHandler
Daniel Arndt [Mon, 23 Apr 2018 23:32:38 +0000 (01:32 +0200)]
Store the FECollection object and not just the pointer in DoFHandler and hp::DoFHandler

6 years agoMerge pull request #6299 from tjhei/msvc_support
Matthias Maier [Mon, 23 Apr 2018 22:21:06 +0000 (17:21 -0500)]
Merge pull request #6299 from tjhei/msvc_support

blacklist MSVC 2015 or older

6 years agoTests: metis/metis_05 add output variant 6302/head
Matthias Maier [Mon, 23 Apr 2018 22:18:18 +0000 (17:18 -0500)]
Tests: metis/metis_05 add output variant

6 years agoMerge pull request #6301 from bangerth/update-changelog
Denis Davydov [Mon, 23 Apr 2018 21:59:48 +0000 (23:59 +0200)]
Merge pull request #6301 from bangerth/update-changelog

Minor updates to changelog entries.

6 years agoMinor updates to changelog entries. 6301/head
Wolfgang Bangerth [Mon, 23 Apr 2018 21:57:04 +0000 (15:57 -0600)]
Minor updates to changelog entries.

6 years agoMerge pull request #6284 from tamiko/fix_cornercase
Timo Heister [Mon, 23 Apr 2018 21:54:29 +0000 (17:54 -0400)]
Merge pull request #6284 from tamiko/fix_cornercase

Tests: Always create a small 'detailed.log' file

6 years agoInitialize mapping_type in FE_PolyTensor 6292/head
Daniel Arndt [Mon, 23 Apr 2018 13:59:54 +0000 (15:59 +0200)]
Initialize mapping_type in FE_PolyTensor

6 years agoAvoid uninitialized value in GridIn::read_mesh
Daniel Arndt [Mon, 23 Apr 2018 13:59:23 +0000 (15:59 +0200)]
Avoid uninitialized value in GridIn::read_mesh

6 years agoCheck dynamic_cast in TimeDependent
Daniel Arndt [Mon, 23 Apr 2018 13:58:18 +0000 (15:58 +0200)]
Check dynamic_cast in TimeDependent

6 years agoUse AssertNothrow in Utilities::MPI::MPI_InitFinalize
Daniel Arndt [Mon, 23 Apr 2018 13:57:16 +0000 (15:57 +0200)]
Use AssertNothrow in Utilities::MPI::MPI_InitFinalize

6 years agoRestore formatting options in Abaqus_to_UCD
Daniel Arndt [Mon, 23 Apr 2018 14:06:17 +0000 (16:06 +0200)]
Restore formatting options in Abaqus_to_UCD

6 years agoFixed issues by TH and WB. 6295/head
Luca Heltai [Mon, 23 Apr 2018 18:01:54 +0000 (20:01 +0200)]
Fixed issues by TH and WB.

6 years agoMerge pull request #6298 from tamiko/petsc_390
Wolfgang Bangerth [Mon, 23 Apr 2018 20:08:00 +0000 (14:08 -0600)]
Merge pull request #6298 from tamiko/petsc_390

PETSc: Port to version 3.9.0

6 years agoblacklist MSVC 2015 or older 6299/head
Timo Heister [Mon, 23 Apr 2018 17:45:08 +0000 (13:45 -0400)]
blacklist MSVC 2015 or older

because we can no longer support it

6 years agoDoc: Update latest known version to 3.9.0 6298/head
Matthias Maier [Mon, 23 Apr 2018 18:13:31 +0000 (13:13 -0500)]
Doc: Update latest known version to 3.9.0

6 years agoMerge pull request #6287 from drwells/update-gridgenerator-examples-1
David Wells [Mon, 23 Apr 2018 17:50:56 +0000 (13:50 -0400)]
Merge pull request #6287 from drwells/update-gridgenerator-examples-1

Update basic Manifold usage in the examples.

6 years agoUpdate basic Manifold usage in the examples. 6287/head
David Wells [Sun, 22 Apr 2018 21:12:08 +0000 (17:12 -0400)]
Update basic Manifold usage in the examples.

6 years agoMerge pull request #6281 from masterleinad/hp_dh
Wolfgang Bangerth [Mon, 23 Apr 2018 16:50:38 +0000 (10:50 -0600)]
Merge pull request #6281 from masterleinad/hp_dh

Store a copy of the FECollection object in hp::DoFHandler

6 years agoadd a changes entry
Matthias Maier [Mon, 23 Apr 2018 16:36:47 +0000 (11:36 -0500)]
add a changes entry

6 years agoPETSc: Port to version 3.9.0
Matthias Maier [Mon, 23 Apr 2018 16:34:12 +0000 (11:34 -0500)]
PETSc: Port to version 3.9.0

In version 3.9.0 *SolverPackage was renamed to *SolverType. Guard the
two instances where we call such functions.


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