]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
6 years agoSwitch a few OC tests to use new manifold names. 6583/head
David Wells [Wed, 16 May 2018 22:12:25 +0000 (18:12 -0400)]
Switch a few OC tests to use new manifold names.

The old versions of these classes are implemented by inheriting from
their replacements, so if tests pass with old names then they should
pass with new names. To be sure, though, convert a few of the tests to
use the new names.

6 years agoAdd a new test that checks manifold clones.
David Wells [Wed, 16 May 2018 22:10:12 +0000 (18:10 -0400)]
Add a new test that checks manifold clones.

We want to be sure that we can clone all of the renamed opencascade
manifolds and end up with an object that really has the original type:
put another way, we want to be sure that these are not implemented as
aliases but as their own classes.

6 years agoRename the opencascade Manifold classes.
David Wells [Sat, 12 May 2018 18:15:28 +0000 (14:15 -0400)]
Rename the opencascade Manifold classes.

Manifolds have names ending in 'Manifold': now that Boundary is gone these names
do not make sense.

For backwards compatibility, the old classes now simply inherit from the
correctly-named Manifold versions. This requires marking some things that were
private now as protected.

6 years agoMerge pull request #6567 from luca-heltai/fix-tutorial-doxygen-generation
David Wells [Fri, 11 May 2018 17:28:11 +0000 (13:28 -0400)]
Merge pull request #6567 from luca-heltai/fix-tutorial-doxygen-generation

Make sure program2doxygen does not change code blocks

6 years agoMerge pull request #6577 from kronbichler/fix_matrix_vector_faces_05
Martin Kronbichler [Fri, 11 May 2018 08:34:48 +0000 (10:34 +0200)]
Merge pull request #6577 from kronbichler/fix_matrix_vector_faces_05

Disable a test of a functionality that is currently experimental

6 years agoMerge pull request #6576 from masterleinad/fix_docu_htl
Wolfgang Bangerth [Fri, 11 May 2018 06:52:04 +0000 (01:52 -0500)]
Merge pull request #6576 from masterleinad/fix_docu_htl

Fix reference to FETools::hierarchic_to_lexicographic_numbering

6 years agoDisable a test of a functionality that is currently experimental. 6577/head
Martin Kronbichler [Fri, 11 May 2018 06:38:28 +0000 (08:38 +0200)]
Disable a test of a functionality that is currently experimental.

6 years agoFix reference to FETools::hierarchic_to_lexicographic_numbering 6576/head
Daniel Arndt [Thu, 10 May 2018 23:54:25 +0000 (01:54 +0200)]
Fix reference to FETools::hierarchic_to_lexicographic_numbering

6 years agoFixed perl regex. 6567/head
Luca Heltai [Thu, 10 May 2018 14:39:08 +0000 (16:39 +0200)]
Fixed perl regex.

6 years agoMerge pull request #6574 from drwells/update-porting
Wolfgang Bangerth [Thu, 10 May 2018 14:27:49 +0000 (09:27 -0500)]
Merge pull request #6574 from drwells/update-porting

Update the porting document.

6 years agoUpdate the porting document. 6574/head
David Wells [Thu, 10 May 2018 13:47:46 +0000 (09:47 -0400)]
Update the porting document.

6 years agoMerge pull request #6573 from drwells/update-navbar
Wolfgang Bangerth [Thu, 10 May 2018 13:47:35 +0000 (08:47 -0500)]
Merge pull request #6573 from drwells/update-navbar

Update some navbar links.

6 years agoUpdate some navbar links. 6573/head
David Wells [Thu, 10 May 2018 13:38:00 +0000 (09:38 -0400)]
Update some navbar links.

6 years agoFixed WB comment. Removed temporaryly the random new style.
Luca Heltai [Thu, 10 May 2018 12:16:57 +0000 (14:16 +0200)]
Fixed WB comment. Removed temporaryly the random new style.

6 years agoMerge pull request #6566 from bangerth/semicolon
Matthias Maier [Thu, 10 May 2018 10:57:40 +0000 (05:57 -0500)]
Merge pull request #6566 from bangerth/semicolon

semicolon

6 years agoAdded div around inlined code.
Luca Heltai [Thu, 10 May 2018 10:02:54 +0000 (12:02 +0200)]
Added div around inlined code.

6 years agoMerge pull request #6568 from tamiko/make_aspect_happy
Wolfgang Bangerth [Thu, 10 May 2018 09:38:00 +0000 (04:38 -0500)]
Merge pull request #6568 from tamiko/make_aspect_happy

CMake: Do not set -Wsuggest-override in the project configuration

6 years agoMerge pull request #6569 from luca-heltai/doc-fixes
Denis Davydov [Thu, 10 May 2018 09:33:53 +0000 (11:33 +0200)]
Merge pull request #6569 from luca-heltai/doc-fixes

Doc fixes

6 years agoDon't use tables in results.dox (copied from step 18) 6569/head
Luca Heltai [Thu, 10 May 2018 09:21:51 +0000 (11:21 +0200)]
Don't use tables in results.dox (copied from step 18)

6 years agoCMake: Do not set -Wsuggest-override in the project configuration 6568/head
Matthias Maier [Thu, 10 May 2018 09:19:35 +0000 (04:19 -0500)]
CMake: Do not set -Wsuggest-override in the project configuration

6 years agoMake sure program2doxygen does not change code blocks
Luca Heltai [Thu, 10 May 2018 08:47:51 +0000 (10:47 +0200)]
Make sure program2doxygen does not change code blocks

6 years agosemicolon 6566/head
Wolfgang Bangerth [Thu, 10 May 2018 01:46:36 +0000 (09:46 +0800)]
semicolon

6 years agoFixed some issues with step-60 doc.
Luca Heltai [Thu, 10 May 2018 07:25:50 +0000 (09:25 +0200)]
Fixed some issues with step-60 doc.

6 years agoMerge pull request #6564 from jppelteret/doc_fix_03
Wolfgang Bangerth [Thu, 10 May 2018 05:21:19 +0000 (00:21 -0500)]
Merge pull request #6564 from jppelteret/doc_fix_03

Small doc fixes to the AD module

6 years agoSmall doc fixes to the AD module 6564/head
Jean-Paul Pelteret [Thu, 10 May 2018 05:13:49 +0000 (07:13 +0200)]
Small doc fixes to the AD module

6 years agoMerge pull request #6550 from bangerth/array
Daniel Arndt [Thu, 10 May 2018 04:37:27 +0000 (06:37 +0200)]
Merge pull request #6550 from bangerth/array

Simplify a function that returns an array.

6 years agoMerge pull request #6562 from masterleinad/avoid_std_bind1st
Daniel Arndt [Thu, 10 May 2018 04:35:50 +0000 (06:35 +0200)]
Merge pull request #6562 from masterleinad/avoid_std_bind1st

Avoid using std::bind1st in FE_Nedelec_SZ

6 years agoMerge pull request #6542 from jppelteret/ad-documentation
Denis Davydov [Thu, 10 May 2018 01:08:12 +0000 (03:08 +0200)]
Merge pull request #6542 from jppelteret/ad-documentation

Add documentation for AD module

6 years agoAboid using std::bind1st in FE_Nedelec_SZ 6562/head
Daniel Arndt [Thu, 10 May 2018 00:40:45 +0000 (02:40 +0200)]
Aboid using std::bind1st in FE_Nedelec_SZ

6 years agoMerge pull request #6559 from masterleinad/fix_override
Wolfgang Bangerth [Thu, 10 May 2018 00:27:02 +0000 (19:27 -0500)]
Merge pull request #6559 from masterleinad/fix_override

 Make sure to use override where appropriate

6 years agoAdd compiler flag -Wsuggest-override 6559/head
Daniel Arndt [Wed, 9 May 2018 18:19:45 +0000 (20:19 +0200)]
Add compiler flag -Wsuggest-override

6 years agoUse override in the bundled boost where possible
Daniel Arndt [Wed, 9 May 2018 17:53:41 +0000 (19:53 +0200)]
Use override in the bundled boost where possible

6 years agoMake sure to use override where appropriate
Daniel Arndt [Wed, 9 May 2018 14:58:09 +0000 (16:58 +0200)]
Make sure to use override where appropriate

6 years agoFix DA's comments 6542/head
Jean-Paul Pelteret [Wed, 9 May 2018 19:43:10 +0000 (21:43 +0200)]
Fix DA's comments

6 years agoMerge pull request #6556 from masterleinad/fix_nedelec_sz_non_rect_2d
Martin Kronbichler [Wed, 9 May 2018 18:37:49 +0000 (20:37 +0200)]
Merge pull request #6556 from masterleinad/fix_nedelec_sz_non_rect_2d

Fix fe/fe_nedelec_sz_non_rect_2d

6 years agoMerge pull request #6554 from bangerth/patch-1
Martin Kronbichler [Wed, 9 May 2018 14:33:56 +0000 (16:33 +0200)]
Merge pull request #6554 from bangerth/patch-1

Obtain the correct size for an output vector from the source, rather than from an output array.

6 years agoFix FE_Nedelec_SZ 6556/head
Daniel Arndt [Wed, 9 May 2018 14:29:26 +0000 (16:29 +0200)]
Fix FE_Nedelec_SZ

6 years agoFix DD's comments; other documentation improvements
Jean-Paul Pelteret [Wed, 9 May 2018 06:39:15 +0000 (08:39 +0200)]
Fix DD's comments; other documentation improvements

6 years agoMerge pull request #6553 from kronbichler/improve_gmres_eigenvalues
Martin Kronbichler [Wed, 9 May 2018 10:52:06 +0000 (12:52 +0200)]
Merge pull request #6553 from kronbichler/improve_gmres_eigenvalues

Improve test lac/gmres_eigenvalues

6 years agoFix fe/fe_nedelec_sz_non_rect_2d
Daniel Arndt [Wed, 9 May 2018 10:27:19 +0000 (12:27 +0200)]
Fix fe/fe_nedelec_sz_non_rect_2d

6 years agoDouble-brace an initializer list, as required by some compilers. 6550/head
Wolfgang Bangerth [Wed, 9 May 2018 08:59:11 +0000 (16:59 +0800)]
Double-brace an initializer list, as required by some compilers.

6 years agoMerge pull request #6555 from jppelteret/doc-step-18
Wolfgang Bangerth [Wed, 9 May 2018 09:02:50 +0000 (04:02 -0500)]
Merge pull request #6555 from jppelteret/doc-step-18

Fix results image table for step 18

6 years agoCorrect whitespace in doxygen code section 6555/head
Jean-Paul Pelteret [Wed, 9 May 2018 08:36:23 +0000 (10:36 +0200)]
Correct whitespace in doxygen code section

6 years agoReformat table of images in step-18 results section
Jean-Paul Pelteret [Wed, 9 May 2018 08:35:49 +0000 (10:35 +0200)]
Reformat table of images in step-18 results section

6 years agoAdd CSS environment for three column layout
Jean-Paul Pelteret [Wed, 9 May 2018 08:35:30 +0000 (10:35 +0200)]
Add CSS environment for three column layout

6 years agoMerge pull request #2240 from rosskynch/NedelecSZ
Martin Kronbichler [Wed, 9 May 2018 07:34:10 +0000 (09:34 +0200)]
Merge pull request #2240 from rosskynch/NedelecSZ

New Nedelec finite element: FE_NedelecSZ

6 years agoObtain the correct size for an output vector from the source, rather than from an... 6554/head
Wolfgang Bangerth [Tue, 8 May 2018 14:41:54 +0000 (22:41 +0800)]
Obtain the correct size for an output vector from the source, rather than from an output array.

6 years agoMerge pull request #6546 from masterleinad/fix_mpi_tag
Martin Kronbichler [Wed, 9 May 2018 05:59:01 +0000 (07:59 +0200)]
Merge pull request #6546 from masterleinad/fix_mpi_tag

Use MPI_TAGs that are guaranteed to be valid

6 years agoMerge pull request #6529 from bangerth/patch-5
Martin Kronbichler [Wed, 9 May 2018 05:58:13 +0000 (07:58 +0200)]
Merge pull request #6529 from bangerth/patch-5

Utilize the C++11 constructors of std::[io]stream taking a std::string.

6 years agoMerge pull request #6530 from bangerth/patch-4
Martin Kronbichler [Wed, 9 May 2018 05:57:28 +0000 (07:57 +0200)]
Merge pull request #6530 from bangerth/patch-4

Do not convert a std::string to char* just to convert it back.

6 years agoMerge pull request #6526 from bangerth/patch-7
Martin Kronbichler [Wed, 9 May 2018 05:57:04 +0000 (07:57 +0200)]
Merge pull request #6526 from bangerth/patch-7

Simplify a resize statement.

6 years agoMerge pull request #6527 from bangerth/patch-8
Martin Kronbichler [Wed, 9 May 2018 05:55:58 +0000 (07:55 +0200)]
Merge pull request #6527 from bangerth/patch-8

Align function arguments as we usually do.

6 years agoMerge pull request #6528 from bangerth/patch-3
Martin Kronbichler [Wed, 9 May 2018 05:55:40 +0000 (07:55 +0200)]
Merge pull request #6528 from bangerth/patch-3

Use the appropriate type to state a zero.

6 years agoImprove test lac/gmres_eigenvalues. 6553/head
Martin Kronbichler [Wed, 9 May 2018 05:36:16 +0000 (07:36 +0200)]
Improve test lac/gmres_eigenvalues.

6 years agoAdd a changelog entry.
Wolfgang Bangerth [Wed, 9 May 2018 01:49:49 +0000 (09:49 +0800)]
Add a changelog entry.

6 years agoSimplify a function that returns an array.
Wolfgang Bangerth [Wed, 9 May 2018 01:46:19 +0000 (09:46 +0800)]
Simplify a function that returns an array.

Previously, it used a reference to an array as an output argument. Now, we can just
return a std::array<...,dim>.

6 years agoMerge pull request #6531 from bangerth/patch-2
Daniel Arndt [Wed, 9 May 2018 01:08:03 +0000 (03:08 +0200)]
Merge pull request #6531 from bangerth/patch-2

Use the appropriate type to state a constant.

6 years agoMerge pull request #6545 from bangerth/doc-update
David Wells [Wed, 9 May 2018 00:53:31 +0000 (20:53 -0400)]
Merge pull request #6545 from bangerth/doc-update

Leave a note in the documentation of class ArrayView.

6 years agoMerge pull request #6544 from bangerth/doc-update-81
Matthias Maier [Wed, 9 May 2018 00:39:35 +0000 (19:39 -0500)]
Merge pull request #6544 from bangerth/doc-update-81

Further clarify readme.html

6 years agoMerge pull request #6543 from bangerth/doc-update-80
Matthias Maier [Wed, 9 May 2018 00:38:54 +0000 (19:38 -0500)]
Merge pull request #6543 from bangerth/doc-update-80

Update the Gmsh entry in readme.html.

6 years agoMerge pull request #6537 from drwells/attach-torus-manifold
Matthias Maier [Wed, 9 May 2018 00:26:40 +0000 (19:26 -0500)]
Merge pull request #6537 from drwells/attach-torus-manifold

Attach a TorusManifold to a Torus.

6 years agoMerge pull request #6539 from tjhei/doxygen_add_bdm_to_fe
Wolfgang Bangerth [Wed, 9 May 2018 00:17:01 +0000 (19:17 -0500)]
Merge pull request #6539 from tjhei/doxygen_add_bdm_to_fe

add FE_BDM to doxygen FE group

6 years agoLeave a note in the documentation of class ArrayView. 6545/head
Wolfgang Bangerth [Mon, 30 Apr 2018 03:54:07 +0000 (21:54 -0600)]
Leave a note in the documentation of class ArrayView.

6 years agoUse MPI_TAGs that are guaranteed to be valid 6546/head
Daniel Arndt [Wed, 9 May 2018 00:11:09 +0000 (02:11 +0200)]
Use MPI_TAGs that are guaranteed to be valid

6 years agoClarify some text. 6544/head
Wolfgang Bangerth [Wed, 9 May 2018 00:10:24 +0000 (08:10 +0800)]
Clarify some text.

6 years agoRemove a repetitive piece of text that doesn't add information.
Wolfgang Bangerth [Wed, 9 May 2018 00:08:43 +0000 (08:08 +0800)]
Remove a repetitive piece of text that doesn't add information.

6 years agoUpdate the Gmsh entry in readme.html. 6543/head
Wolfgang Bangerth [Wed, 9 May 2018 00:05:24 +0000 (08:05 +0800)]
Update the Gmsh entry in readme.html.

6 years agoMerge pull request #6541 from davydden/doc/gmsh_info
Wolfgang Bangerth [Wed, 9 May 2018 00:01:17 +0000 (19:01 -0500)]
Merge pull request #6541 from davydden/doc/gmsh_info

doc: say what we need from Gmsh

6 years agoAdd documentation for AD module
Jean-Paul Pelteret [Tue, 8 May 2018 21:23:09 +0000 (23:23 +0200)]
Add documentation for AD module

Fixes #6172

6 years agodoc: say what we need from Gmsh 6541/head
Denis Davydov [Tue, 8 May 2018 21:04:00 +0000 (23:04 +0200)]
doc: say what we need from Gmsh

6 years agoMerge pull request #6532 from bangerth/patch-1
Denis Davydov [Tue, 8 May 2018 19:51:53 +0000 (21:51 +0200)]
Merge pull request #6532 from bangerth/patch-1

Break a statement in a way that is easier to read.

6 years agoAttach a TorusManifold to a Torus. 6537/head
David Wells [Tue, 8 May 2018 14:48:51 +0000 (10:48 -0400)]
Attach a TorusManifold to a Torus.

6 years agoMerge pull request #6540 from drwells/step-60-typos
Luca Heltai [Tue, 8 May 2018 19:28:43 +0000 (21:28 +0200)]
Merge pull request #6540 from drwells/step-60-typos

Step 60 typos

6 years agoAdd the step-60 builds-on file. 6540/head
David Wells [Tue, 8 May 2018 19:09:28 +0000 (15:09 -0400)]
Add the step-60 builds-on file.

6 years agoRemove trailing whitespace.
David Wells [Tue, 8 May 2018 19:07:24 +0000 (15:07 -0400)]
Remove trailing whitespace.

6 years agoCreate another doxygen link.
David Wells [Tue, 8 May 2018 19:06:14 +0000 (15:06 -0400)]
Create another doxygen link.

6 years agoFix some markdown mishandling by doxygen.
David Wells [Tue, 8 May 2018 19:05:31 +0000 (15:05 -0400)]
Fix some markdown mishandling by doxygen.

My copy of doxygen does not correctly bold all statements with double
earmuffs; use HTML instead.

6 years agoRemove spurious links to Boundary.
David Wells [Tue, 8 May 2018 19:04:45 +0000 (15:04 -0400)]
Remove spurious links to Boundary.

6 years agoadd FE_BDM to doxygen FE group 6539/head
Timo Heister [Tue, 8 May 2018 18:07:28 +0000 (20:07 +0200)]
add FE_BDM to doxygen FE group

6 years agoMerge pull request #6535 from masterleinad/increase_tolerance_quadrature_chebyshev
Martin Kronbichler [Tue, 8 May 2018 17:19:20 +0000 (19:19 +0200)]
Merge pull request #6535 from masterleinad/increase_tolerance_quadrature_chebyshev

Slighty increase tolerance in base/quadrature_chebyshev

6 years agoFix some typos in step-60.
David Wells [Tue, 8 May 2018 16:57:40 +0000 (12:57 -0400)]
Fix some typos in step-60.

6 years agoMerge pull request #6538 from drwells/update-gridgenerator-docs
Matthias Maier [Tue, 8 May 2018 16:18:38 +0000 (11:18 -0500)]
Merge pull request #6538 from drwells/update-gridgenerator-docs

Update gridgenerator docs

6 years agoMerge pull request #6536 from masterleinad/decrease_tolerance_lac_gmres_eigenvalues
Matthias Maier [Tue, 8 May 2018 16:16:43 +0000 (11:16 -0500)]
Merge pull request #6536 from masterleinad/decrease_tolerance_lac_gmres_eigenvalues

Slightly decrease solver tolerance in lac/gmres_eigenvalues

6 years agoRemove a static Manifold from an example. 6538/head
David Wells [Tue, 8 May 2018 16:05:44 +0000 (12:05 -0400)]
Remove a static Manifold from an example.

6 years agoClarify Manifold attachment in some functions.
David Wells [Tue, 8 May 2018 16:05:23 +0000 (12:05 -0400)]
Clarify Manifold attachment in some functions.

6 years agoMention Manifold attachment in GridGenerator.
David Wells [Tue, 8 May 2018 16:04:55 +0000 (12:04 -0400)]
Mention Manifold attachment in GridGenerator.

6 years agoMerge pull request #6533 from luca-heltai/hot-fix-step-60
Wolfgang Bangerth [Tue, 8 May 2018 13:55:14 +0000 (08:55 -0500)]
Merge pull request #6533 from luca-heltai/hot-fix-step-60

Make sure that also the output of the embedded value is on the deformed grid

6 years agoMerge pull request #6523 from bangerth/step-23
Daniel Arndt [Tue, 8 May 2018 13:33:20 +0000 (15:33 +0200)]
Merge pull request #6523 from bangerth/step-23

Align member variables in step-23.

6 years agoSlightly decrease solver tolerance in lac/gmres_eigenvalues 6536/head
Daniel Arndt [Tue, 8 May 2018 12:40:12 +0000 (14:40 +0200)]
Slightly decrease solver tolerance in lac/gmres_eigenvalues

6 years agoSlighty increase tolerance in base/quadrature_chebyshev 6535/head
Daniel Arndt [Tue, 8 May 2018 12:29:57 +0000 (14:29 +0200)]
Slighty increase tolerance in base/quadrature_chebyshev

6 years agoMerge pull request #6525 from bangerth/patch-6
Denis Davydov [Tue, 8 May 2018 11:01:36 +0000 (13:01 +0200)]
Merge pull request #6525 from bangerth/patch-6

Align colons in the query_testsuite script

6 years agoMake sure that also the output of the embedded value is on the deformed grid. 6533/head
Luca Heltai [Tue, 8 May 2018 11:01:24 +0000 (13:01 +0200)]
Make sure that also the output of the embedded value is on the deformed grid.

6 years agoAlign function arguments as we usually do. 6527/head
Wolfgang Bangerth [Tue, 8 May 2018 10:37:27 +0000 (18:37 +0800)]
Align function arguments as we usually do.

6 years agoSimplify a resize statement. 6526/head
Wolfgang Bangerth [Tue, 8 May 2018 10:34:18 +0000 (18:34 +0800)]
Simplify a resize statement.

In particular, it is not necessary to actually copy the data of the
template vector here -- we really only care about its size.

6 years agoAlign colons. 6525/head
Wolfgang Bangerth [Tue, 8 May 2018 09:22:53 +0000 (17:22 +0800)]
Align colons.

6 years agoUtilize the C++11 constructors of std::[io]stream taking a std::string. 6529/head
Wolfgang Bangerth [Tue, 8 May 2018 09:18:18 +0000 (17:18 +0800)]
Utilize the C++11 constructors of std::[io]stream taking a std::string.

Previously, we had widely used the constructors that take a char* and for that needed
to call the '.c_str()' function of std::string. This is now no longer necessary in C++11.

6 years agoDo not convert a std::string to char* just to convert it back. 6530/head
Wolfgang Bangerth [Tue, 8 May 2018 09:16:28 +0000 (17:16 +0800)]
Do not convert a std::string to char* just to convert it back.

6 years agoUse the appropriate type to state a zero. 6528/head
Wolfgang Bangerth [Tue, 8 May 2018 08:35:32 +0000 (16:35 +0800)]
Use the appropriate type to state a zero.

Specifically, make sure that a statement also compiles if we are working with
complex-valued data.

6 years agoUse the appropriate type to state a constant. 6531/head
Wolfgang Bangerth [Tue, 8 May 2018 08:34:55 +0000 (16:34 +0800)]
Use the appropriate type to state a constant.

Specifically, make sure that a statement also compiles if we are working with
complex-valued data.

6 years agoBreak a statement in a way that is easier to read. 6532/head
Wolfgang Bangerth [Tue, 8 May 2018 08:34:06 +0000 (16:34 +0800)]
Break a statement in a way that is easier to read.


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