]>
https://gitweb.dealii.org/ - dealii.git/log
Martin Kronbichler [Thu, 24 May 2018 11:18:30 +0000 (13:18 +0200)]
Changelog.
Martin Kronbichler [Thu, 24 May 2018 11:11:18 +0000 (13:11 +0200)]
Add test for the new feature.
Martin Kronbichler [Thu, 24 May 2018 11:10:50 +0000 (13:10 +0200)]
Minor.
Martin Kronbichler [Thu, 24 May 2018 11:10:10 +0000 (13:10 +0200)]
Do call plain update_ghost_values()/compress() for block vector with many blocks.
Martin Kronbichler [Thu, 24 May 2018 11:09:35 +0000 (13:09 +0200)]
Make LA::d::BlockVector::communication_block_size public.
Wolfgang Bangerth [Thu, 24 May 2018 05:08:07 +0000 (00:08 -0500)]
Merge pull request #6632 from drwells/gnuplot-compression-1
Gnuplot compression 1
David Wells [Thu, 24 May 2018 00:56:23 +0000 (20:56 -0400)]
Merge pull request #6657 from bangerth/step-47
Remove the never finished step-47.
Wolfgang Bangerth [Wed, 23 May 2018 22:35:23 +0000 (06:35 +0800)]
Remove the never finished step-47.
We started this program in 2012, but it was never finished and there is no plan to
ever do so. A paper on the topic using deal.II has also been published in the
meantime:
Carraro, Wetterauer: On the implementation of the eXtended Finite Element Method (XFEM) for interface problems
Archive of Numerical Software, vol. 4, no. 2.
Daniel Arndt [Wed, 23 May 2018 17:32:45 +0000 (19:32 +0200)]
Merge pull request #6654 from masterleinad/avoid_1d_arrays
Avoid using one-dimensional arrays in place of multi-dimensional ones
Daniel Arndt [Wed, 23 May 2018 12:42:30 +0000 (14:42 +0200)]
Avoid using one-dimensional arrays in place of multi-dimensional ones
Wolfgang Bangerth [Wed, 23 May 2018 12:20:15 +0000 (07:20 -0500)]
Merge pull request #6651 from masterleinad/remove_petsc_include
Remove unnecessary PETSc include file
Wolfgang Bangerth [Wed, 23 May 2018 12:16:46 +0000 (07:16 -0500)]
Merge pull request #6653 from masterleinad/restrict_progress_bar
Only use progress bar in wget if available
Daniel Arndt [Wed, 23 May 2018 12:04:09 +0000 (14:04 +0200)]
Merge pull request #6652 from masterleinad/unused_variables_cxx17
Fix warning for unused variables in CXX17 mode
Daniel Arndt [Wed, 23 May 2018 11:35:21 +0000 (13:35 +0200)]
Only use progress bar in wget if available
Daniel Arndt [Wed, 23 May 2018 08:38:59 +0000 (10:38 +0200)]
Merge pull request #6645 from bangerth/step-2
No longer mark the finite element as 'static' in step-2.
Daniel Arndt [Wed, 23 May 2018 08:01:27 +0000 (10:01 +0200)]
Fix warning for unused variables in CXX17 mode
Daniel Arndt [Wed, 23 May 2018 08:03:06 +0000 (10:03 +0200)]
Remove unnecessary PETSc include file
Martin Kronbichler [Wed, 23 May 2018 07:39:20 +0000 (09:39 +0200)]
Merge pull request #6106 from alexrobomind/petsc_multigrid
Support for PETSc in MGTransferPrebuilt (multigrid)
David Wells [Tue, 22 May 2018 20:21:21 +0000 (16:21 -0400)]
Merge pull request #6649 from bangerth/step-4
Fix more wonky indentation (this time in step-4).
Daniel Arndt [Tue, 22 May 2018 19:55:48 +0000 (21:55 +0200)]
Merge pull request #6630 from gassmoeller/fix_mapping_q_eulerian_parallel_vertices
Fix `extract_used_vertices` for calls with distributed MappingQEulerian
Wolfgang Bangerth [Tue, 22 May 2018 16:37:25 +0000 (00:37 +0800)]
Fix more wonky indentation (this time in step-4).
Wolfgang Bangerth [Tue, 22 May 2018 15:27:31 +0000 (23:27 +0800)]
No longer mark the finite element as 'static' in step-2.
This is not necessary any more since the DoFHandler copies the FE instead of storing
a reference to it. This also allows to remove a good deal of commentary that is
completely obscure to anyone not familiar with C++.
Wolfgang Bangerth [Tue, 22 May 2018 15:02:59 +0000 (10:02 -0500)]
Merge pull request #6428 from marcfehling/pack_compression_choice
Introduce option to force no compression in pack/unpack.
Wolfgang Bangerth [Tue, 22 May 2018 15:00:37 +0000 (10:00 -0500)]
Merge pull request #6639 from masterleinad/restrict_c++17_check
Restrict C++17 check
Wolfgang Bangerth [Tue, 22 May 2018 14:58:12 +0000 (09:58 -0500)]
Fix a grammar mistaks.
Daniel Arndt [Tue, 22 May 2018 09:31:06 +0000 (11:31 +0200)]
Merge pull request #6636 from adamqc/fix-step-16
Fix step-16.
Daniel Arndt [Tue, 22 May 2018 08:00:58 +0000 (10:00 +0200)]
Merge pull request #6644 from drwells/more-freedoms-to-freedom
Fix a few more instances of 'freedoms'
David Wells [Tue, 22 May 2018 02:01:01 +0000 (22:01 -0400)]
Merge pull request #6643 from bangerth/doc-update-7
Fix a typo (twice) live in front of 60 students.
David Wells [Tue, 22 May 2018 01:59:28 +0000 (21:59 -0400)]
Fix a few more instances of 'freedoms'
Since 'degrees' is already plural 'freedom' should not be.
Wolfgang Bangerth [Tue, 22 May 2018 01:39:10 +0000 (09:39 +0800)]
Fix a typo (twice) live in front of 60 students.
David Wells [Tue, 22 May 2018 01:04:52 +0000 (21:04 -0400)]
Merge pull request #6641 from bangerth/step-6
Add some background material about AMR to step-6.
David Wells [Tue, 22 May 2018 00:51:57 +0000 (20:51 -0400)]
Merge pull request #6642 from bangerth/step-51
Satsfy my OCD.
Wolfgang Bangerth [Mon, 21 May 2018 15:31:38 +0000 (23:31 +0800)]
Add some background material about AMR to step-6.
Wolfgang Bangerth [Tue, 22 May 2018 00:47:29 +0000 (08:47 +0800)]
Satsfy my OCD.
Rene Gassmoeller [Mon, 21 May 2018 18:38:01 +0000 (11:38 -0700)]
Update documentation
Alexander Knieps [Sun, 4 Mar 2018 19:52:34 +0000 (20:52 +0100)]
Added support for PETSc in MGTransferPrebuilt, internal::MatrixSelector (mg_transfer.h), Removed local_columns.n_elements() > 0 assertion in PETScWrappers::MPI::SparseMatrix
David Wells [Mon, 21 May 2018 14:14:02 +0000 (10:14 -0400)]
Merge pull request #6640 from bangerth/step-45
Make clear in the program that we omit significant parts of step-45.
Wolfgang Bangerth [Mon, 21 May 2018 12:53:34 +0000 (20:53 +0800)]
Make clear in the program that we omit significant parts of step-45.
Daniel Arndt [Sun, 20 May 2018 23:49:02 +0000 (01:49 +0200)]
Restrict C++17 check
Ce Qin [Sun, 20 May 2018 14:43:31 +0000 (22:43 +0800)]
Fix step-16.
David Wells [Sat, 19 May 2018 17:00:34 +0000 (13:00 -0400)]
Add another GNUPLOT test.
David Wells [Sat, 19 May 2018 16:59:15 +0000 (12:59 -0400)]
Fix some bugs with codim = 1 GNUPLOT output.
David Wells [Mon, 14 May 2018 21:29:00 +0000 (17:29 -0400)]
Update tests to reflect the compression algorithm.
David Wells [Sun, 29 Apr 2018 18:08:50 +0000 (14:08 -0400)]
Avoid writing colinear points in GridOut::write_gnuplot.
GridOut::write_gnuplot has an option where, for plotting curved grids, it can
plot multiple line segments per face to give the illusion of a cell with curved
faces. This procedure creates massive output files since every face of every
corresponds to many individual line segments.
This commit implements a compression scheme where we do not output intermediate
points that are colinear. This lowers the number of points in a polar grid
output file by about 50% (i.e., the radial cell faces are not curved and can be
plotted with two points instead of perhaps five or six; same for the interior
cell faces).
Daniel Arndt [Sun, 20 May 2018 19:55:59 +0000 (21:55 +0200)]
Merge pull request #6635 from bangerth/use-wget
Use wget instead of curl.
Wolfgang Bangerth [Sun, 20 May 2018 15:22:43 +0000 (10:22 -0500)]
Merge pull request #6631 from masterleinad/fix_hp_flux_sparsity
Fix make_flux_sparsity_pattern for hp::DoFHandler
Daniel Arndt [Sun, 20 May 2018 11:33:44 +0000 (13:33 +0200)]
Simplify DoFTools::make_flux_sparsity_pattern and test more cases
Daniel Arndt [Sun, 20 May 2018 13:08:17 +0000 (15:08 +0200)]
Merge pull request #6619 from bangerth/doc-update-6
Better document the introduction of step-45.
Wolfgang Bangerth [Sun, 20 May 2018 08:27:08 +0000 (16:27 +0800)]
Use wget instead of curl.
Also show a progress bar for the download, but be otherwise quiet.
David Wells [Sat, 19 May 2018 19:45:19 +0000 (15:45 -0400)]
Merge pull request #6614 from tamiko/add-clang-format
Contrib: Add a scripts to compile/download clang-format
Matthias Maier [Sat, 19 May 2018 18:37:09 +0000 (13:37 -0500)]
update hash
Daniel Arndt [Sat, 19 May 2018 18:21:15 +0000 (20:21 +0200)]
Add test case and changelog entry
David Wells [Fri, 18 May 2018 15:20:06 +0000 (11:20 -0400)]
Update the GNUPlot flags.
This commit fixes two intertwined issues with the current set of flags:
1. The variable names and descriptions are written in a way that implies
only boundary lines can be curved (which is no longer true). This commit
renames n_boundary_face_points to n_curved_line_points to make this
clearer.
2. write_gnuplot currently writes a lot of extra lines for boundary
faces in 3D and there is no way to turn this off. I would like to use
this function to generate wireframes of meshes, so I do not want this
extra output. I added a boolean (defaults to true) that controls whether
or not these extra lines are plotted.
Daniel Arndt [Sat, 19 May 2018 12:46:20 +0000 (14:46 +0200)]
Work around using shallow-since if not available
Matthias Maier [Thu, 17 May 2018 20:51:40 +0000 (15:51 -0500)]
fix typos
Matthias Maier [Thu, 17 May 2018 20:26:53 +0000 (15:26 -0500)]
Contrib: compile_clang_format - fix compilation on darwin
Matthias Maier [Thu, 17 May 2018 15:45:37 +0000 (10:45 -0500)]
Contrib: Add tarball for darwin
Matthias Maier [Wed, 16 May 2018 23:12:58 +0000 (18:12 -0500)]
Contrib: Add a script to download a static clang-format
Matthias Maier [Wed, 16 May 2018 22:58:04 +0000 (17:58 -0500)]
Contrib: Add a script to compile clang-format
Wolfgang Bangerth [Sat, 19 May 2018 13:55:51 +0000 (08:55 -0500)]
Merge pull request #6616 from masterleinad/use_mpi_comm_create
Use Utilities::MPI::create_group instead of MPI_Comm_create
Wolfgang Bangerth [Thu, 17 May 2018 05:53:50 +0000 (13:53 +0800)]
Better document the introduction of step-45.
David Wells [Mon, 14 May 2018 18:06:25 +0000 (14:06 -0400)]
Remove some faulty unicode.
Contributors are generally not cited in source code, so this should be
removed.
David Wells [Sun, 29 Apr 2018 18:08:32 +0000 (14:08 -0400)]
Rewrap some comments.
Daniel Arndt [Sat, 19 May 2018 00:57:49 +0000 (02:57 +0200)]
Fix make_flux_sparsity_pattern for hp::DoFHandler
Rene Gassmoeller [Fri, 18 May 2018 21:29:49 +0000 (14:29 -0700)]
Ignore artificial cells, update test
Rene Gassmoeller [Fri, 18 May 2018 21:26:44 +0000 (14:26 -0700)]
Add failing test
Martin Kronbichler [Fri, 18 May 2018 19:08:20 +0000 (21:08 +0200)]
Merge pull request #6628 from kronbichler/fix_mf_glibc_debug
Fix invalid access uncovered GLIBCXX_DEBUG in MatrixFree
Timo Heister [Fri, 18 May 2018 18:42:41 +0000 (20:42 +0200)]
Merge pull request #6624 from tamiko/fix_offline_doc
Contrib: Update make_offlinedoc.sh
Daniel Arndt [Fri, 18 May 2018 17:08:52 +0000 (19:08 +0200)]
Clarify which MPI_Comm is referred to in a comment
Matthias Maier [Fri, 18 May 2018 12:48:50 +0000 (07:48 -0500)]
further improve download script
Martin Kronbichler [Fri, 18 May 2018 14:57:11 +0000 (16:57 +0200)]
Add changelog.
Martin Kronbichler [Fri, 18 May 2018 13:17:36 +0000 (15:17 +0200)]
Do not set bound for next loop round at last item.
Martin Kronbichler [Fri, 18 May 2018 13:13:47 +0000 (15:13 +0200)]
Fix out-of-range access with GLIBCXX_DEBUG.
Martin Kronbichler [Fri, 18 May 2018 10:46:51 +0000 (12:46 +0200)]
Merge pull request #6626 from masterleinad/fix_mf_taskinfo
Avoid accessing uninitialized memory in TaskInfo
Daniel Arndt [Fri, 18 May 2018 07:48:43 +0000 (09:48 +0200)]
Avoid accessing uninitialized memory in TaskInfo
Matthias Maier [Fri, 18 May 2018 02:58:46 +0000 (21:58 -0500)]
Contrib: Update make_offlinedoc.sh
- actually download all (online) portions of the documentation
- improve sed command
Denis Davydov [Fri, 18 May 2018 03:10:16 +0000 (05:10 +0200)]
Merge pull request #6623 from masterleinad/fix_debug_glibcxx_test
Fix ambiguous call in mappings/mapping_real_to_unit_q1_singular_02
Denis Davydov [Fri, 18 May 2018 03:05:15 +0000 (05:05 +0200)]
Merge pull request #6621 from drwells/glibc-debug-fixes-1
Glibc debug fixes 1
Daniel Arndt [Fri, 18 May 2018 00:38:37 +0000 (02:38 +0200)]
Fix ambiguous call in mappings/mapping_real_to_unit_q1_singular_02
David Wells [Thu, 17 May 2018 22:00:42 +0000 (18:00 -0400)]
Exit a function early if there are no DoFs.
The debug mode of glibc complains that, with FE_Nothing, we end up doing
an invalid array access below. Avoid that by returning early if there is
nothing to do anyway.
David Wells [Thu, 17 May 2018 21:59:00 +0000 (17:59 -0400)]
Change some dereferences to pointer arithmetic.
This avoids dereferencing (and then calculating the address of) an entry
one past the end.
Daniel Arndt [Wed, 16 May 2018 23:48:26 +0000 (01:48 +0200)]
Use Utilities::MPI::create_group instead of MPI_Comm_create
Jean-Paul Pelteret [Thu, 17 May 2018 13:21:44 +0000 (15:21 +0200)]
Merge pull request #6620 from bangerth/doc-update-4
Use American English spelling.
Wolfgang Bangerth [Thu, 17 May 2018 13:06:00 +0000 (21:06 +0800)]
Use American English spelling.
Luca Heltai [Thu, 17 May 2018 11:58:01 +0000 (13:58 +0200)]
Merge pull request #6583 from drwells/rename-opencascade-manifolds
Rename the opencascade Manifold classes.
Martin Kronbichler [Thu, 17 May 2018 07:31:29 +0000 (09:31 +0200)]
Merge pull request #6605 from bangerth/doc-update-4
Properly mark up formulas in the FE_NedelecSZ class documentation.
Martin Kronbichler [Thu, 17 May 2018 07:30:22 +0000 (09:30 +0200)]
Merge pull request #6611 from masterleinad/fix_mg_distributed_dofs
Check that level dofs are initialized when calling DoFHandler::locally_owned_mg_dofs
Matthias Maier [Wed, 16 May 2018 23:40:13 +0000 (18:40 -0500)]
Merge pull request #6615 from masterleinad/set_default_mpi
Make sure to set default values for MPI_VERSION_*
Marc Fehling [Wed, 2 May 2018 21:47:13 +0000 (15:47 -0600)]
Introduce option to force no compression in pack/unpack.
Daniel Arndt [Wed, 16 May 2018 23:14:47 +0000 (01:14 +0200)]
Make sure to set default values for MPI_VERSION_*
David Wells [Wed, 16 May 2018 22:12:25 +0000 (18:12 -0400)]
Switch a few OC tests to use new manifold names.
The old versions of these classes are implemented by inheriting from
their replacements, so if tests pass with old names then they should
pass with new names. To be sure, though, convert a few of the tests to
use the new names.
David Wells [Wed, 16 May 2018 22:10:12 +0000 (18:10 -0400)]
Add a new test that checks manifold clones.
We want to be sure that we can clone all of the renamed opencascade
manifolds and end up with an object that really has the original type:
put another way, we want to be sure that these are not implemented as
aliases but as their own classes.
David Wells [Sat, 12 May 2018 18:15:28 +0000 (14:15 -0400)]
Rename the opencascade Manifold classes.
Manifolds have names ending in 'Manifold': now that Boundary is gone these names
do not make sense.
For backwards compatibility, the old classes now simply inherit from the
correctly-named Manifold versions. This requires marking some things that were
private now as protected.
Daniel Arndt [Wed, 16 May 2018 22:18:25 +0000 (00:18 +0200)]
Merge pull request #6613 from tamiko/rename_scripts
Contrib: rename download_codecov_bash.sh to download_codecov
Matthias Maier [Wed, 16 May 2018 20:10:10 +0000 (15:10 -0500)]
Contrib: Rename download_codecov_bash.sh to download_codecov
Matthias Maier [Wed, 16 May 2018 19:56:00 +0000 (14:56 -0500)]
add an entry to .gitignore
Luca Heltai [Wed, 16 May 2018 19:54:53 +0000 (21:54 +0200)]
Merge pull request #6582 from drwells/remove-boundary
Remove all remaining usages of Boundary.
Daniel Arndt [Wed, 16 May 2018 13:35:01 +0000 (15:35 +0200)]
Check that level dofs are initialized when calling DoFHandler<dim, spacedim>::locally_owned_mg_dofs
Denis Davydov [Wed, 16 May 2018 08:57:02 +0000 (10:57 +0200)]
Merge pull request #6606 from bangerth/doc-update-5
Predefine the MPI and P4EST versions for doxygen.
Wolfgang Bangerth [Wed, 16 May 2018 07:26:56 +0000 (15:26 +0800)]
Predefine the MPI and P4EST versions for doxygen.
In the beginning the Universe was created. This has made a lot of
people very angry and has been widely regarded as a bad move.
Douglas Adams
Typeset in
Trocchi and Trocchi Bold Sans Serif.