]>
https://gitweb.dealii.org/ - dealii.git/log
David Wells [Tue, 23 Oct 2018 02:15:01 +0000 (22:15 -0400)]
step-27: Lower the linear solver tolerance.
This makes the pictures symmetric.
David Wells [Mon, 22 Oct 2018 17:50:39 +0000 (13:50 -0400)]
step-27: Update pictures and discussion.
David Wells [Sun, 21 Oct 2018 18:35:56 +0000 (14:35 -0400)]
step-27: Improve some algorithm discussion.
This change modernizes the discussion (we use distribute_local_to_global
in step-6 now) and clarifies that we should use a DynamicSparsityPattern.
David Wells [Sun, 21 Oct 2018 18:33:34 +0000 (14:33 -0400)]
step-27: Improve typography in the documentation.
1. Fix some minor typographical problems and typos (missing comma,
missing HTML, etc.)
2. Consistently use spaces instead of tabs and spaces.
3. Format code samples in the same way clang-format does it (i.e., no
space before function calls)
4. Combine numerators of some fractions to prevent them from running off
the side of the screen.
David Wells [Mon, 22 Oct 2018 17:39:39 +0000 (13:39 -0400)]
Fix an issue with CSS on Firefox.
Newer versions of Firefox do not use grid-column-gap or grid-row-gap,
when either value is a percentage instead of a fixed length, when
computing the size of the element. This is not unreasonable; the size of
the container depends on the spacing, which in turn depends on the
spacing, so defining lengths is difficult.
Get around this by just specifying absolute sizes for margins. Since
most of our pictures are 500x500 px this is still about 5% anyway.
David Wells [Mon, 15 Oct 2018 04:20:31 +0000 (00:20 -0400)]
Merge pull request #7350 from bangerth/doc-update
Improve wording of a doc string.
Wolfgang Bangerth [Mon, 15 Oct 2018 03:33:53 +0000 (21:33 -0600)]
Improve wording of a doc string.
Wolfgang Bangerth [Sun, 14 Oct 2018 23:58:31 +0000 (17:58 -0600)]
Merge pull request #7330 from BenBrands/ScaLAPACK_doc
ScaLAPACKMatrix: improve documentation
Wolfgang Bangerth [Sun, 14 Oct 2018 23:49:30 +0000 (17:49 -0600)]
Merge pull request #7327 from JonMatthewsFCAS/proj_div_conform_distributed_fix
Added cell->is_locally_owned() in project_boundary_values_div_conforming
Matthias Maier [Sun, 14 Oct 2018 15:38:52 +0000 (10:38 -0500)]
Merge pull request #7346 from masterleinad/fix_sacado_tests
Fix failing Sacado tests
Daniel Arndt [Sat, 13 Oct 2018 21:53:17 +0000 (23:53 +0200)]
Fix failing Sacado tests
Jean-Paul Pelteret [Sun, 14 Oct 2018 08:28:34 +0000 (10:28 +0200)]
Add ad_helpers.h to unifying header
Daniel Arndt [Sun, 14 Oct 2018 11:25:47 +0000 (07:25 -0400)]
Merge pull request #7347 from masterleinad/replce_constraintmatrix_in_tests
Replace ConstraintMatrix by AffineConstraints in tests
Daniel Arndt [Sun, 14 Oct 2018 11:25:18 +0000 (07:25 -0400)]
Merge pull request #7349 from masterleinad/restrict_non_matching_coupling_07
Restrict non_matching/coupling_07
Denis Davydov [Sun, 14 Oct 2018 03:31:20 +0000 (05:31 +0200)]
Merge pull request #7348 from masterleinad/avoid_warninigs_ad_drivers
Avoid warnings in ad_drivers.h
Daniel Arndt [Sun, 14 Oct 2018 00:15:40 +0000 (02:15 +0200)]
Restrict non_matching/coupling_07
Daniel Arndt [Sat, 13 Oct 2018 22:24:10 +0000 (00:24 +0200)]
Avoid warnings in ad_drivers.h
Daniel Arndt [Sat, 13 Oct 2018 22:09:58 +0000 (00:09 +0200)]
Replace ConstraintMatrix by AffineConstraints in tests
Denis Davydov [Sat, 13 Oct 2018 20:38:19 +0000 (22:38 +0200)]
Merge pull request #7230 from masterleinad/omit_complex_instantiations
Allow omitting std::complex instantiations
Jean-Paul Pelteret [Sat, 13 Oct 2018 19:22:57 +0000 (21:22 +0200)]
Add a changelog entry
JonathanMatthewsFCAS [Thu, 11 Oct 2018 04:32:59 +0000 (21:32 -0700)]
Added test for project_boundary_values_div_conforming usage on a distributed triangulation.
Jonathan L Matthews [Mon, 3 Sep 2018 22:16:00 +0000 (15:16 -0700)]
added cell->is_locally_owned() in project_boundary_values_div_conforming()
Daniel Arndt [Sat, 13 Oct 2018 00:09:44 +0000 (20:09 -0400)]
Merge pull request #7338 from jppelteret/ad-helpers-tests_01
Add tests for cell-level ADHelper classes
Daniel Arndt [Fri, 12 Oct 2018 20:59:13 +0000 (16:59 -0400)]
Merge pull request #7342 from jppelteret/ad-helpers-fixup_01
Americanize the ADHelperResidualLinearization class name
Jean-Paul Pelteret [Fri, 12 Oct 2018 19:42:06 +0000 (21:42 +0200)]
Merge pull request #7343 from bangerth/doc-update-1
Use the infinitive form of verbs in the first sentence of doc strings.
Wolfgang Bangerth [Fri, 12 Oct 2018 19:34:33 +0000 (13:34 -0600)]
Use the infinitive form of verbs in the first sentence of doc strings.
Jean-Paul Pelteret [Fri, 12 Oct 2018 06:32:56 +0000 (08:32 +0200)]
Add tests for ADHelperResidualLinearization
Jean-Paul Pelteret [Fri, 12 Oct 2018 06:32:04 +0000 (08:32 +0200)]
Add tests for ADHelperEnergyFunctional
Wolfgang Bangerth [Fri, 12 Oct 2018 17:21:20 +0000 (11:21 -0600)]
Merge pull request #7339 from jppelteret/ad-registered_tape_query
Refactor check for registered tapes
Jean-Paul Pelteret [Fri, 12 Oct 2018 16:49:54 +0000 (18:49 +0200)]
Americanize the ADHelperResidualLinearization class name
Wolfgang Bangerth [Fri, 12 Oct 2018 15:21:14 +0000 (09:21 -0600)]
Merge pull request #7340 from jppelteret/ad-helpers-tests_02
Add tests to check compilation of functions / classes with AD numbers
Wolfgang Bangerth [Fri, 12 Oct 2018 15:19:59 +0000 (09:19 -0600)]
Merge pull request #6978 from jppelteret/ad-helpers_04
AD Helpers: Add helper for residual linearisation (cell-level)
Jean-Paul Pelteret [Fri, 12 Oct 2018 13:19:18 +0000 (15:19 +0200)]
Add tests to check compilation with AD numbers: Physics NS (part 3)
Physics::Transformations
Jean-Paul Pelteret [Fri, 12 Oct 2018 13:18:44 +0000 (15:18 +0200)]
Add tests to check compilation with AD numbers: Physics NS (part 2)
Physics::Elasticity::StandardTensors class
Jean-Paul Pelteret [Fri, 12 Oct 2018 13:18:08 +0000 (15:18 +0200)]
Add tests to check compilation with AD numbers: Physics NS (part 1)
Physics::Elasticity::Kinematics
Jean-Paul Pelteret [Fri, 12 Oct 2018 13:17:11 +0000 (15:17 +0200)]
Add tests to check compilation with AD numbers: SymmetricTensor class
Jean-Paul Pelteret [Fri, 12 Oct 2018 13:16:35 +0000 (15:16 +0200)]
Add tests to check compilation with AD numbers: Tensor class
Jean-Paul Pelteret [Fri, 12 Oct 2018 12:59:49 +0000 (14:59 +0200)]
Refactor check for registered tapes
Jean-Paul Pelteret [Fri, 12 Oct 2018 06:09:47 +0000 (08:09 +0200)]
Improve documentation for ADHelperEnergyFunctional
Jean-Paul Pelteret [Fri, 12 Oct 2018 06:09:06 +0000 (08:09 +0200)]
Improve documentation for ADHelperCellLevelBase
Jean-Paul Pelteret [Fri, 12 Oct 2018 05:48:53 +0000 (07:48 +0200)]
Improve an in-code comment
Jean-Paul Pelteret [Wed, 25 Jul 2018 21:13:12 +0000 (23:13 +0200)]
AD Helpers: Add helper for residual linearisation (cell-level)
Daniel Arndt [Fri, 12 Oct 2018 03:29:59 +0000 (23:29 -0400)]
Merge pull request #7336 from masterleinad/fix_step-16
Fix step-16
Benjamin Brands [Thu, 11 Oct 2018 14:22:29 +0000 (16:22 +0200)]
ScaLAPACKMatrix: improve documentation
Daniel Arndt [Fri, 12 Oct 2018 00:11:33 +0000 (02:11 +0200)]
Fix step-16
Wolfgang Bangerth [Thu, 11 Oct 2018 23:23:40 +0000 (17:23 -0600)]
Merge pull request #7329 from BenBrands/ScaLAPACK_use_string
use std::string instead of char *
Wolfgang Bangerth [Thu, 11 Oct 2018 23:23:02 +0000 (17:23 -0600)]
Merge pull request #7283 from jppelteret/refactor_ad_drivers_helper_base_01
Refactor AD drivers helper base 01
Jean-Paul Pelteret [Fri, 5 Oct 2018 15:40:12 +0000 (17:40 +0200)]
Move special AD numbers related to taping from namespaces to structs.
Refer to #7117
Jean-Paul Pelteret [Fri, 5 Oct 2018 14:09:44 +0000 (16:09 +0200)]
Change an exception.
This commit corrects the spelling of an exception that refers to ADOL-C
(capitalised).
Jean-Paul Pelteret [Fri, 5 Oct 2018 14:05:03 +0000 (16:05 +0200)]
Rework implementation of taping within ADHelperBase.
This commit abstracts the notion of taping almost completely away from
the ADHelperBase class. The specifics of the taping process are now
fully contained within the driver classes (at the expense of having to
have some non-static interfaces to the driver classes). However, this
should better enable further extension to use other taped AD
implementations in the future.
Denis Davydov [Thu, 11 Oct 2018 20:23:01 +0000 (22:23 +0200)]
Merge pull request #7334 from tamiko/update_changes_master
Update the changelog file for the release.
Matthias Maier [Thu, 11 Oct 2018 19:40:18 +0000 (14:40 -0500)]
Update the changelog file for the release.
Wolfgang Bangerth [Thu, 11 Oct 2018 19:53:51 +0000 (13:53 -0600)]
Merge pull request #7332 from tamiko/fix_changes
add a missing changes entry
Matthias Maier [Thu, 11 Oct 2018 19:44:04 +0000 (14:44 -0500)]
add a missing changes entry
Jean-Paul Pelteret [Thu, 11 Oct 2018 17:47:59 +0000 (19:47 +0200)]
Merge pull request #7325 from bangerth/doc-update
Minor doc update to class parallel::CellWeights.
Wolfgang Bangerth [Wed, 10 Oct 2018 23:03:02 +0000 (17:03 -0600)]
Minor doc update to class parallel::CellWeights.
Benjamin Brands [Thu, 11 Oct 2018 08:47:39 +0000 (10:47 +0200)]
use std::string instead of char *
Wolfgang Bangerth [Wed, 10 Oct 2018 21:52:16 +0000 (15:52 -0600)]
Merge pull request #7301 from BenBrands/new_constructor_ScaLAPACK
add constructor for ScaLAPACKMatrix
Wolfgang Bangerth [Wed, 10 Oct 2018 21:38:52 +0000 (15:38 -0600)]
Merge pull request #7320 from dsambit/fixAltivecCompilation
Fixes compilation issues when using altivec vectorization.
Jean-Paul Pelteret [Wed, 10 Oct 2018 19:17:17 +0000 (21:17 +0200)]
Merge pull request #7277 from bangerth/hp-test
Add a test for the parallel hp implementation.
Jean-Paul Pelteret [Wed, 10 Oct 2018 16:16:46 +0000 (18:16 +0200)]
Merge pull request #7284 from marcfehling/merge-domination
Introduced FECollection::find_most_face_dominating_fe_in_subset().
Jean-Paul Pelteret [Wed, 10 Oct 2018 14:35:41 +0000 (16:35 +0200)]
Merge pull request #7310 from davydden/feature/tmmult_pattern
add DynamicSparsityPattern::compute_Tmmult_pattern() by moving existi…
Jean-Paul Pelteret [Wed, 10 Oct 2018 14:35:19 +0000 (16:35 +0200)]
Merge pull request #7295 from luca-heltai/boost-rtree-wrapper
Boost rtree wrapper
Denis Davydov [Tue, 9 Oct 2018 07:59:46 +0000 (09:59 +0200)]
add DynamicSparsityPattern::compute_Tmmult_pattern() by moving existing code
Jean-Paul Pelteret [Wed, 10 Oct 2018 10:46:32 +0000 (12:46 +0200)]
Merge pull request #7305 from marcfehling/cell-weights-shared
Make 'CellWeights' available for any 'p::Triangulation'.
Jean-Paul Pelteret [Wed, 10 Oct 2018 08:13:33 +0000 (10:13 +0200)]
Merge pull request #7322 from tamiko/fix_a_test_5
Tests: Fix race condition between mpi and non-mpi variants
Sambit Das [Wed, 10 Oct 2018 01:51:09 +0000 (21:51 -0400)]
Fixes compilation issue when using altivec vectorization.
Daniel Arndt [Wed, 10 Oct 2018 03:59:30 +0000 (23:59 -0400)]
Merge pull request #7311 from masterleinad/restrict_functionparser
Restrict examples that require a working FunctionParser class
Matthias Maier [Wed, 10 Oct 2018 03:39:20 +0000 (22:39 -0500)]
Tests: hp/solution_transfer_14: add mpirun=1 to test variant
Matthias Maier [Wed, 10 Oct 2018 03:37:17 +0000 (22:37 -0500)]
Tests: hp/solution_transfer_15: add mpirun=1 to test variant
Matthias Maier [Wed, 10 Oct 2018 03:35:09 +0000 (22:35 -0500)]
Tests: mpi/solution_transfer_02 add mpirun=1 to test variant
Daniel Arndt [Wed, 10 Oct 2018 02:52:23 +0000 (22:52 -0400)]
Merge pull request #7316 from tamiko/fix_a_test_2
Tests: base/reference.cc - avoid "use after scope"
Wolfgang Bangerth [Wed, 10 Oct 2018 01:21:52 +0000 (19:21 -0600)]
Merge pull request #7317 from tamiko/fix_a_test_3
Tests: fe/fe_enriched_color_07 - use a better preconditioner
Marc Fehling [Mon, 8 Oct 2018 22:29:13 +0000 (16:29 -0600)]
Make 'CellWeights' available for any 'p::Triangulation'.
Marc Fehling [Fri, 5 Oct 2018 17:47:52 +0000 (11:47 -0600)]
Introduced FECollection::find_face_dominating_fe_in_subset().
Introduced get_active_fe_indices() in DoFAccessor namespace.
Wolfgang Bangerth [Wed, 10 Oct 2018 00:26:32 +0000 (18:26 -0600)]
Merge pull request #7304 from marcfehling/refactor-find-least
Refactored FECollection::find_least_face_dominating_fe_in_collection().
Matthias Maier [Wed, 10 Oct 2018 00:25:54 +0000 (19:25 -0500)]
Merge pull request #7319 from masterleinad/restruct_cuda_10_cxx17
Disallow C++17 support when compiling with CUDA 10
Marc Fehling [Mon, 8 Oct 2018 20:50:14 +0000 (14:50 -0600)]
Refactored FECollection::find_least_face_dominating_fe_in_collection().
Daniel Arndt [Tue, 9 Oct 2018 21:44:45 +0000 (23:44 +0200)]
Disallow C++17 support when compiling with CUDA 10
Daniel Arndt [Tue, 9 Oct 2018 21:39:01 +0000 (17:39 -0400)]
Merge pull request #7313 from tamiko/fix_a_test
Tests: base/utilities_13.cc - workaround for clang
Matthias Maier [Tue, 9 Oct 2018 21:20:22 +0000 (16:20 -0500)]
fix typos
Matthias Maier [Tue, 9 Oct 2018 21:01:26 +0000 (16:01 -0500)]
Tests: fe/fe_enriched_color_07 - use a better preconditioner
PreconditionSOR does the job here...
Matthias Maier [Tue, 9 Oct 2018 20:16:44 +0000 (15:16 -0500)]
Tests: base/reference.cc - avoid "use after scope"
gcc might be a bit forgiving with our use after scope here,
unfortunately, clang isn't. Let's simply work around this issue by
creating using a sentinel that simply resets the SmartPointer when going
out of scope
Luca Heltai [Tue, 2 Oct 2018 17:35:37 +0000 (19:35 +0200)]
Added rtree, pack_rtree, and Segment.
Matthias Maier [Tue, 9 Oct 2018 16:00:57 +0000 (11:00 -0500)]
Tests: base/utilities_13.cc - workaround for clang
Clang issues a spurious arithmetic exception if this code snippet is
called with a reference long double pointing into the vector. Work
around this issue by explicitly writing out the long double twice.
Denis Davydov [Tue, 9 Oct 2018 14:27:54 +0000 (16:27 +0200)]
Merge pull request #7302 from BenBrands/remove_reference
ScaLAPACKMatrix::reinit() and one constructor: pass shared_ptr by value
Daniel Arndt [Tue, 9 Oct 2018 13:30:12 +0000 (15:30 +0200)]
Restrict examples that require a working FunctionParser class
benjamin [Mon, 8 Oct 2018 19:37:29 +0000 (21:37 +0200)]
add test
benjamin [Mon, 8 Oct 2018 19:17:05 +0000 (21:17 +0200)]
add constructor taking file name as argument to load matrix from disk
benjamin [Mon, 8 Oct 2018 19:45:29 +0000 (21:45 +0200)]
ScaLAPACKMatrix: pass process grid consistently as const ref. to shared_ptr
Jean-Paul Pelteret [Mon, 8 Oct 2018 18:00:25 +0000 (20:00 +0200)]
Merge pull request #7299 from masterleinad/fix_mpi_const_cast
Fix DEAL_II_MPI_CONST_CAST
Jean-Paul Pelteret [Mon, 8 Oct 2018 18:00:04 +0000 (20:00 +0200)]
Merge pull request #7298 from masterleinad/fix_clang_tidy_complains
Fix clang-tidy complaints
Bruno Turcksin [Mon, 8 Oct 2018 12:48:49 +0000 (08:48 -0400)]
Merge pull request #6629 from kronbichler/vectorization_vsx
Implement VectorizedArray for Altivec/VSX (IBM Power)
Daniel Arndt [Mon, 8 Oct 2018 11:48:04 +0000 (13:48 +0200)]
Fix DEAL_II_MPI_CONST_CAST
Martin Kronbichler [Mon, 8 Oct 2018 06:33:32 +0000 (08:33 +0200)]
Print vectorization for altivec
Martin Kronbichler [Fri, 5 Oct 2018 16:23:55 +0000 (18:23 +0200)]
Add changelog.
Martin Kronbichler [Fri, 5 Oct 2018 16:22:17 +0000 (18:22 +0200)]
Add configure check for altivec and enable it in vectorization.h
Martin Kronbichler [Wed, 23 May 2018 09:21:18 +0000 (11:21 +0200)]
Implement float path for altivec vectorization.
Martin Kronbichler [Fri, 18 May 2018 14:27:58 +0000 (16:27 +0200)]
Implement VectorizedArray for Altivec/VSX (IBM Power) in double precision.
Undefine vector, pixel, bool from altivec.h
Daniel Arndt [Mon, 8 Oct 2018 04:46:10 +0000 (06:46 +0200)]
Simplify aliases in step-16
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