]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
5 years agoUse dof_handler instead of dof 8016/head
Daniel Arndt [Mon, 6 May 2019 20:05:55 +0000 (16:05 -0400)]
Use dof_handler instead of dof

5 years agoModernize step-63
Daniel Arndt [Mon, 6 May 2019 12:33:25 +0000 (08:33 -0400)]
Modernize step-63

5 years agoMerge pull request #8007 from drwells/modernize-step-25
Daniel Arndt [Mon, 6 May 2019 03:34:40 +0000 (23:34 -0400)]
Merge pull request #8007 from drwells/modernize-step-25

Modernize step-25.

5 years agoMerge pull request #8006 from drwells/modernize-step-24
Daniel Arndt [Sun, 5 May 2019 20:10:13 +0000 (16:10 -0400)]
Merge pull request #8006 from drwells/modernize-step-24

Modernize step-24.

5 years agoModernize step-25. 8007/head
David Wells [Sat, 4 May 2019 19:09:13 +0000 (15:09 -0400)]
Modernize step-25.

This PR introduces several small changes:
1. Combine declarations and definitions of some simple functinos.
2. Remove some unused headers.
3. Switch to VTU output.

5 years agoModernize step-24. 8006/head
David Wells [Sat, 4 May 2019 16:52:10 +0000 (12:52 -0400)]
Modernize step-24.

This PR introduces several small changes:

1. Remove trailing whitespace.
2. Remove unnecessary default constructor definitions.
3. Combine declarations and definitions of some simple functions.
4. Remove some unused headers.
5. Clean up the discussion of boundaries.
6. Switch to VTU output.

5 years agoMerge pull request #8005 from drwells/modernize-step-23
Daniel Arndt [Sun, 5 May 2019 16:34:11 +0000 (12:34 -0400)]
Merge pull request #8005 from drwells/modernize-step-23

Modernize step-23.

5 years agoModernize step-23. 8005/head
David Wells [Sat, 4 May 2019 15:42:57 +0000 (11:42 -0400)]
Modernize step-23.

This PR introduces several small changes:

1. Don't hard-code two quadrature degrees (followup to #7943).
2. Remove unnecessary default constructor definitions.
3. Combine declarations and definitions of some simple functions>
4. Remove unused headers.
5. Improve whitespace (and remove tabs).
6. Add some more citations to WorkStream.
7. Switch to VTU output so that users can remake the movie.

5 years agoMerge pull request #7971 from ginkgo-project/ginkgo-wrapper-part-2
Daniel Arndt [Fri, 3 May 2019 20:40:14 +0000 (16:40 -0400)]
Merge pull request #7971 from ginkgo-project/ginkgo-wrapper-part-2

Updating Ginkgo wrapper after Ginkgo's release 1.0.0

5 years agoMerge pull request #8000 from kronbichler/cheby_doc_update
Daniel Arndt [Fri, 3 May 2019 20:33:19 +0000 (16:33 -0400)]
Merge pull request #8000 from kronbichler/cheby_doc_update

Update Chebyshev documentation

5 years agoMerge pull request #8001 from dangars/fix_typo_equation
Daniel Arndt [Fri, 3 May 2019 17:28:12 +0000 (13:28 -0400)]
Merge pull request #8001 from dangars/fix_typo_equation

Fix typos in equations

5 years agoFix typos in equations 8001/head
Daniel Garcia-Sanchez [Fri, 3 May 2019 16:29:01 +0000 (18:29 +0200)]
Fix typos in equations

5 years agoUpdate Chebyshev documentation 8000/head
Martin Kronbichler [Fri, 3 May 2019 15:12:46 +0000 (17:12 +0200)]
Update Chebyshev documentation

5 years agoFix changes suggested by @bangerth. 7971/head
Pratik Nayak [Fri, 3 May 2019 14:32:14 +0000 (16:32 +0200)]
Fix changes suggested by @bangerth.

+ Add explanations for CGS,FCG and IR.
+ Fix the doxygen @param with [in,out] qualifications.
+ Add empty lines and fix a typo.
+ Change cerr to Assert.

5 years agoMerge pull request #6982 from jppelteret/ad-helpers_08
Wolfgang Bangerth [Fri, 3 May 2019 13:59:28 +0000 (07:59 -0600)]
Merge pull request #6982 from jppelteret/ad-helpers_08

AD Helpers: Add tests

5 years agoMerge pull request #7998 from Rombur/fix_link
David Wells [Fri, 3 May 2019 13:03:48 +0000 (09:03 -0400)]
Merge pull request #7998 from Rombur/fix_link

fix link to notebook

5 years agofix link to notebook 7998/head
Bruno Turcksin [Fri, 3 May 2019 11:55:33 +0000 (07:55 -0400)]
fix link to notebook

5 years agoReduce ADOL-C max_tape_index limit when using GCC 6982/head
Jean-Paul Pelteret [Fri, 3 May 2019 08:40:06 +0000 (10:40 +0200)]
Reduce ADOL-C max_tape_index limit when using GCC

5 years agoMerge pull request #7996 from dangars/tutorials_list_step-62
Wolfgang Bangerth [Thu, 2 May 2019 20:24:00 +0000 (14:24 -0600)]
Merge pull request #7996 from dangars/tutorials_list_step-62

Add step-62 to the tutorials list

5 years agoAdd step-62 to the tutorials list 7996/head
Daniel Garcia-Sanchez [Thu, 2 May 2019 19:50:48 +0000 (21:50 +0200)]
Add step-62 to the tutorials list

5 years agoMerge pull request #7995 from jppelteret/sd-doc_02
Jean-Paul Pelteret [Thu, 2 May 2019 19:14:29 +0000 (21:14 +0200)]
Merge pull request #7995 from jppelteret/sd-doc_02

Remove namespace aliases in SymEngine headers

5 years agoMerge pull request #7991 from dangars/cmake_options
Daniel Arndt [Thu, 2 May 2019 18:38:23 +0000 (13:38 -0500)]
Merge pull request #7991 from dangars/cmake_options

Add CMake options to the documentation

5 years agoAdd CMake options to the documentation 7991/head
Daniel Garcia-Sanchez [Thu, 2 May 2019 18:10:38 +0000 (20:10 +0200)]
Add CMake options to the documentation

5 years agoMerge pull request #7990 from bangerth/cleanup
David Wells [Thu, 2 May 2019 17:59:54 +0000 (13:59 -0400)]
Merge pull request #7990 from bangerth/cleanup

Rename a local variable, make one 'const'.

5 years agoFix a typo. 7990/head
Wolfgang Bangerth [Wed, 1 May 2019 19:48:36 +0000 (13:48 -0600)]
Fix a typo.

5 years agoRename a local variable, make one 'const'.
Wolfgang Bangerth [Wed, 1 May 2019 19:44:15 +0000 (13:44 -0600)]
Rename a local variable, make one 'const'.

5 years agoRemove a namespace alias in header files 7995/head
Jean-Paul Pelteret [Thu, 2 May 2019 15:18:48 +0000 (17:18 +0200)]
Remove a namespace alias in header files

5 years agoFix a section label
Jean-Paul Pelteret [Thu, 2 May 2019 15:18:17 +0000 (17:18 +0200)]
Fix a section label

5 years agoMerge pull request #7905 from luca-heltai/parsed_convergence_table
David Wells [Thu, 2 May 2019 14:11:22 +0000 (10:11 -0400)]
Merge pull request #7905 from luca-heltai/parsed_convergence_table

Parsed convergence table

5 years agoMerge pull request #7994 from dangars/phononic-cavity-news
Wolfgang Bangerth [Thu, 2 May 2019 11:20:19 +0000 (05:20 -0600)]
Merge pull request #7994 from dangars/phononic-cavity-news

Changelog entry step-62

5 years agoChangelog entry 7994/head
Daniel Garcia-Sanchez [Wed, 1 May 2019 18:01:31 +0000 (20:01 +0200)]
Changelog entry

5 years agoFix documentation. 7905/head
Luca Heltai [Thu, 2 May 2019 07:58:30 +0000 (09:58 +0200)]
Fix documentation.

5 years agoMerge pull request #7993 from drwells/add-missing-override
Martin Kronbichler [Thu, 2 May 2019 07:18:01 +0000 (09:18 +0200)]
Merge pull request #7993 from drwells/add-missing-override

Add some missing override annotations to step-63.

5 years agoMerge pull request #7973 from jppelteret/sd-map_utilities_02
Daniel Arndt [Thu, 2 May 2019 03:49:16 +0000 (22:49 -0500)]
Merge pull request #7973 from jppelteret/sd-map_utilities_02

SD tensor operations: Creation of, and addition to, substitution maps

5 years agoAdd some missing override annotations to step-63. 7993/head
David Wells [Thu, 2 May 2019 02:01:42 +0000 (22:01 -0400)]
Add some missing override annotations to step-63.

5 years agoMerge pull request #7992 from bangerth/fix
David Wells [Thu, 2 May 2019 01:21:55 +0000 (21:21 -0400)]
Merge pull request #7992 from bangerth/fix

Make sure a changelog entry also references the namespace of a function.

5 years agoMake sure a changelog entry also references the namespace of a function. 7992/head
Wolfgang Bangerth [Thu, 2 May 2019 01:06:08 +0000 (19:06 -0600)]
Make sure a changelog entry also references the namespace of a function.

5 years agoMerge pull request #6747 from dangars/phononic-cavity
Wolfgang Bangerth [Wed, 1 May 2019 21:31:26 +0000 (15:31 -0600)]
Merge pull request #6747 from dangars/phononic-cavity

Add phononic cavity tutorial

5 years agoMerge pull request #7974 from jppelteret/sd-map_utilities_03
Daniel Arndt [Wed, 1 May 2019 20:36:30 +0000 (15:36 -0500)]
Merge pull request #7974 from jppelteret/sd-map_utilities_03

SD scalar operations: Creation of substitution maps

5 years agoMerge pull request #7738 from tcclevenger/step-63
Wolfgang Bangerth [Wed, 1 May 2019 19:23:25 +0000 (13:23 -0600)]
Merge pull request #7738 from tcclevenger/step-63

Step-63

5 years agoSet-up the dependencies 6747/head
Daniel Garcia-Sanchez [Wed, 1 May 2019 17:24:32 +0000 (19:24 +0200)]
Set-up the dependencies

5 years agoMerge pull request #7913 from luca-heltai/mapping-center
Wolfgang Bangerth [Wed, 1 May 2019 15:32:51 +0000 (09:32 -0600)]
Merge pull request #7913 from luca-heltai/mapping-center

Mapping::get_center()

5 years agoMerge pull request #7986 from bangerth/61-5
David Wells [Wed, 1 May 2019 14:12:23 +0000 (10:12 -0400)]
Merge pull request #7986 from bangerth/61-5

Align a set of equations.

5 years agoMerge pull request #7987 from bangerth/fix-typos
David Wells [Wed, 1 May 2019 14:12:06 +0000 (10:12 -0400)]
Merge pull request #7987 from bangerth/fix-typos

Fix a couple of typos.

5 years agoFix a couple of typos. 7987/head
Wolfgang Bangerth [Wed, 1 May 2019 14:05:34 +0000 (08:05 -0600)]
Fix a couple of typos.

5 years agoAlign a set of equations. 7986/head
Wolfgang Bangerth [Wed, 1 May 2019 14:03:25 +0000 (08:03 -0600)]
Align a set of equations.

5 years agoMerge pull request #7984 from jppelteret/sd-doc_01
Wolfgang Bangerth [Wed, 1 May 2019 13:52:33 +0000 (07:52 -0600)]
Merge pull request #7984 from jppelteret/sd-doc_01

Enable doxygen to build SD documentation

5 years agoMerge pull request #7954 from bangerth/61-4
David Wells [Wed, 1 May 2019 13:52:13 +0000 (09:52 -0400)]
Merge pull request #7954 from bangerth/61-4

Edit the results section of step-61.

5 years agoMerge pull request #7985 from jppelteret/ad-doc_02
Wolfgang Bangerth [Wed, 1 May 2019 13:51:50 +0000 (07:51 -0600)]
Merge pull request #7985 from jppelteret/ad-doc_02

Update module on user interfaces to AD libraries

5 years agoexclude_from_rates -> compute_rate
Luca Heltai [Wed, 1 May 2019 13:11:52 +0000 (15:11 +0200)]
exclude_from_rates -> compute_rate

5 years agoMerge pull request #7983 from rezarastak/grid_in_abaqus_newline_fix
Bruno Turcksin [Wed, 1 May 2019 12:29:30 +0000 (08:29 -0400)]
Merge pull request #7983 from rezarastak/grid_in_abaqus_newline_fix

newline bug in grid_in_abaqus fixed

5 years agoUpdate module on user interfaces to AD libraries 7985/head
Jean-Paul Pelteret [Wed, 1 May 2019 11:16:48 +0000 (13:16 +0200)]
Update module on user interfaces to AD libraries

5 years agoAdd placeholder for documentation on symbolic differentiation 7984/head
Jean-Paul Pelteret [Wed, 1 May 2019 09:51:41 +0000 (11:51 +0200)]
Add placeholder for documentation on symbolic differentiation

5 years agoBuild documentation with SymEngine enabled
Jean-Paul Pelteret [Wed, 1 May 2019 09:51:09 +0000 (11:51 +0200)]
Build documentation with SymEngine enabled

5 years agoreverting the effects of the last commit on the last line of the inp file 7983/head
Reza Rastak [Wed, 1 May 2019 04:33:35 +0000 (21:33 -0700)]
reverting the effects of the last commit on the last line of the inp file

5 years agoUse 'align' instead of 'eqnarray'. 7954/head
Wolfgang Bangerth [Wed, 1 May 2019 03:41:59 +0000 (21:41 -0600)]
Use 'align' instead of 'eqnarray'.

5 years agoEdit the results section of step-61.
Wolfgang Bangerth [Wed, 24 Apr 2019 00:56:40 +0000 (18:56 -0600)]
Edit the results section of step-61.

5 years agofix typo in 2d_short_handwritten.inp
Reza Rastak [Wed, 1 May 2019 02:45:53 +0000 (19:45 -0700)]
fix typo in 2d_short_handwritten.inp

5 years agoRemoved boolean from options.
Luca Heltai [Wed, 1 May 2019 01:32:42 +0000 (03:32 +0200)]
Removed boolean from options.

5 years agoMerge pull request #7982 from rezarastak/patch-1
Bruno Turcksin [Wed, 1 May 2019 00:10:47 +0000 (20:10 -0400)]
Merge pull request #7982 from rezarastak/patch-1

Arpack Solver documentation fix

5 years agoMerge pull request #7966 from masterleinad/cleanup_cuda_mf_reinit
Bruno Turcksin [Wed, 1 May 2019 00:09:13 +0000 (20:09 -0400)]
Merge pull request #7966 from masterleinad/cleanup_cuda_mf_reinit

Clean up CUDAWrappers::MatrixFree::reinit interface

5 years agogrid_in_abaqus test added
Reza Rastak [Tue, 30 Apr 2019 22:07:10 +0000 (15:07 -0700)]
grid_in_abaqus test added

5 years agonewline bug in grid_in_abaqus fixed
Reza Rastak [Tue, 30 Apr 2019 22:03:56 +0000 (15:03 -0700)]
newline bug in grid_in_abaqus fixed

5 years agoArpack Solver documentation fix 7982/head
Reza Rastak [Tue, 30 Apr 2019 20:41:29 +0000 (13:41 -0700)]
Arpack Solver documentation fix

5 years agoFixed tabs problem.
Luca Heltai [Tue, 30 Apr 2019 19:48:33 +0000 (21:48 +0200)]
Fixed tabs problem.

5 years agoWB suggestions.
Wolfgang Bangerth [Tue, 30 Apr 2019 15:51:04 +0000 (17:51 +0200)]
WB suggestions.

Co-Authored-By: luca-heltai <luca.heltai@sissa.it>
5 years agoMoved to major.
Luca Heltai [Tue, 30 Apr 2019 14:38:57 +0000 (16:38 +0200)]
Moved to major.

5 years agoUpdated code to use VectorTools::NormType
Luca Heltai [Tue, 30 Apr 2019 14:37:34 +0000 (16:37 +0200)]
Updated code to use VectorTools::NormType

5 years agoFix copyright notice
David Wells [Sat, 27 Apr 2019 14:02:39 +0000 (10:02 -0400)]
Fix copyright notice

5 years agoComply with clang-tidy.
Luca Heltai [Wed, 10 Apr 2019 16:40:59 +0000 (18:40 +0200)]
Comply with clang-tidy.

5 years agoChangeLog.
Luca Heltai [Wed, 10 Apr 2019 00:14:29 +0000 (02:14 +0200)]
ChangeLog.

5 years agoParsedConvergenceTable, custom error computations, writing to files
Luca Heltai [Wed, 10 Apr 2019 00:07:31 +0000 (02:07 +0200)]
ParsedConvergenceTable, custom error computations, writing to files

5 years agoParsedConvergenceTable, custom error computations, time rates
Luca Heltai [Tue, 9 Apr 2019 23:55:56 +0000 (01:55 +0200)]
ParsedConvergenceTable, custom error computations, time rates

5 years agoParsedConvergenceTable, custom error, no extra columns
Luca Heltai [Tue, 9 Apr 2019 23:52:34 +0000 (01:52 +0200)]
ParsedConvergenceTable, custom error, no extra columns

5 years agoParsedConvergenceTable, custom error computation.
Luca Heltai [Tue, 9 Apr 2019 23:44:43 +0000 (01:44 +0200)]
ParsedConvergenceTable, custom error computation.

5 years agoParsedConvergenceTable, two components, ignore second one
Luca Heltai [Tue, 9 Apr 2019 23:38:02 +0000 (01:38 +0200)]
ParsedConvergenceTable, two components, ignore second one

5 years agoParsedConvergenceTable, vector function + scalar function
Luca Heltai [Tue, 9 Apr 2019 23:26:56 +0000 (01:26 +0200)]
ParsedConvergenceTable, vector function + scalar function

5 years agoParsedConvergenceTable, vector functions, single component
Luca Heltai [Tue, 9 Apr 2019 23:24:10 +0000 (01:24 +0200)]
ParsedConvergenceTable, vector functions, single component

5 years agoParsedConvergenceTable, non scalar functions
Luca Heltai [Tue, 9 Apr 2019 23:22:29 +0000 (01:22 +0200)]
ParsedConvergenceTable, non scalar functions

5 years agoParsedConvergenceTable, parameters output
Luca Heltai [Tue, 9 Apr 2019 23:15:50 +0000 (01:15 +0200)]
ParsedConvergenceTable, parameters output

5 years agoParsedConvergenceTable, scalar function
Luca Heltai [Tue, 9 Apr 2019 23:10:43 +0000 (01:10 +0200)]
ParsedConvergenceTable, scalar function

5 years agoParsedConvergenceTable
Luca Heltai [Tue, 9 Apr 2019 22:58:34 +0000 (00:58 +0200)]
ParsedConvergenceTable

5 years agoMerge pull request #7981 from masterleinad/restrict_symengine_test
Jean-Paul Pelteret [Tue, 30 Apr 2019 07:35:40 +0000 (09:35 +0200)]
Merge pull request #7981 from masterleinad/restrict_symengine_test

Restrict SymEngine test

5 years agoRestrict SymEngine test 7981/head
Daniel Arndt [Tue, 30 Apr 2019 03:41:25 +0000 (05:41 +0200)]
Restrict SymEngine test

5 years agoMerge pull request #7967 from masterleinad/empty_cuda_kernels
Daniel Arndt [Tue, 30 Apr 2019 02:33:33 +0000 (21:33 -0500)]
Merge pull request #7967 from masterleinad/empty_cuda_kernels

Deal with empty empty sizes in CUDA kernels

5 years agoMerge pull request #7979 from luzpaz/misc-typos
David Wells [Tue, 30 Apr 2019 01:28:29 +0000 (21:28 -0400)]
Merge pull request #7979 from luzpaz/misc-typos

Misc. typos

5 years agoCorrection in previous commit per request 7979/head
luz.paz [Mon, 29 Apr 2019 20:47:48 +0000 (16:47 -0400)]
Correction in previous commit per request

https://github.com/dealii/dealii/pull/7979#discussion_r279517855

5 years agoMisc. typos
luz.paz [Mon, 29 Apr 2019 19:49:00 +0000 (15:49 -0400)]
Misc. typos

Found via `codespell -q 3 -I ../dealii-word-whitelist.txt -S ./bundled`

5 years agoMerge pull request #7943 from anates/Relative_fe_degree
Daniel Arndt [Mon, 29 Apr 2019 11:55:51 +0000 (06:55 -0500)]
Merge pull request #7943 from anates/Relative_fe_degree

Degree of quadrature based on degree of the fe-variable

5 years agoMerge pull request #7976 from masterleinad/export_petsc_with_complex
Timo Heister [Mon, 29 Apr 2019 08:15:22 +0000 (10:15 +0200)]
Merge pull request #7976 from masterleinad/export_petsc_with_complex

Export DEAL_II_PETSC_WITH_COMPLEX variable

5 years agoUpdate doc/news/changes/major/20190425RolandRichter 7943/head
Wolfgang Bangerth [Mon, 29 Apr 2019 07:01:27 +0000 (09:01 +0200)]
Update doc/news/changes/major/20190425RolandRichter

Co-Authored-By: anates <rolandar@stud.ntnu.no>
5 years agoDeal with empty sizes in CUDA kernels 7967/head
Daniel Arndt [Thu, 25 Apr 2019 16:54:54 +0000 (18:54 +0200)]
Deal with empty sizes in CUDA kernels

5 years agoMerge pull request #7977 from masterleinad/improve_docu_read_write
Wolfgang Bangerth [Sun, 28 Apr 2019 22:27:00 +0000 (16:27 -0600)]
Merge pull request #7977 from masterleinad/improve_docu_read_write

Improve doxygen documentation for ReadWriteVector

5 years agoMerge pull request #7968 from masterleinad/empty_ranges_cuda_mf_internal_reinit
Bruno Turcksin [Sun, 28 Apr 2019 22:02:33 +0000 (18:02 -0400)]
Merge pull request #7968 from masterleinad/empty_ranges_cuda_mf_internal_reinit

Deal with empty ranges in CUDAWrappers::MatrixFree::internal_reinit

5 years agoImprove doxygen documentation For ReadWriteVector 7977/head
Daniel Arndt [Sun, 28 Apr 2019 18:20:33 +0000 (14:20 -0400)]
Improve doxygen documentation For ReadWriteVector

5 years agoExport DEAL_II_PETSC_WITH_COMPLEX variable 7976/head
Daniel Arndt [Sun, 28 Apr 2019 15:49:21 +0000 (17:49 +0200)]
Export DEAL_II_PETSC_WITH_COMPLEX variable

5 years agoAdd functions to create SD subsitution maps from tensor types 7973/head
Jean-Paul Pelteret [Sat, 27 Apr 2019 09:42:14 +0000 (11:42 +0200)]
Add functions to create SD subsitution maps from tensor types

5 years agoAdd functions to add tensor types to SD subsitution maps
Jean-Paul Pelteret [Sat, 27 Apr 2019 08:46:39 +0000 (10:46 +0200)]
Add functions to add tensor types to SD subsitution maps

5 years agoReformat a section divider
Jean-Paul Pelteret [Sat, 27 Apr 2019 09:24:39 +0000 (11:24 +0200)]
Reformat a section divider

5 years agoAdd test for creation of SD substitution maps from scalar types 7974/head
Jean-Paul Pelteret [Sat, 27 Apr 2019 17:31:44 +0000 (19:31 +0200)]
Add test for creation of SD substitution maps from scalar types


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