]>
https://gitweb.dealii.org/ - dealii.git/log
Matthias Maier [Fri, 17 May 2019 18:46:57 +0000 (13:46 -0500)]
Disable two ADOL-C tests in release configuration
It turns out that some optimizing compilers (gcc-7 onwards) are very
happy in happily optimizing away in case of undefined behavior (that we
are apparently encountering). Let's just disable these tests in release
configuration.
Timo Heister [Fri, 17 May 2019 16:47:18 +0000 (10:47 -0600)]
Merge pull request #8228 from bangerth/63.3
Updates to the step-63 results section.
David Wells [Fri, 17 May 2019 15:48:36 +0000 (11:48 -0400)]
Merge pull request #8224 from masterleinad/general_data_storage_gcc-9
gcc-9 variant for general_data_storage_01
Wolfgang Bangerth [Fri, 17 May 2019 15:09:05 +0000 (09:09 -0600)]
Updates to the step-63 results section.
Daniel Arndt [Fri, 17 May 2019 14:40:02 +0000 (10:40 -0400)]
gcc-9 variant for general_data_storage_01
Jean-Paul Pelteret [Fri, 17 May 2019 12:40:15 +0000 (14:40 +0200)]
Merge pull request #8204 from bangerth/update
Minor updates to the AD page.
Wolfgang Bangerth [Fri, 17 May 2019 09:12:41 +0000 (03:12 -0600)]
Merge pull request #8218 from kronbichler/adjust_documentation
Move changelog entry to proper file
Martin Kronbichler [Fri, 17 May 2019 08:32:41 +0000 (10:32 +0200)]
Move changelog entry into proper place
Wolfgang Bangerth [Fri, 17 May 2019 08:30:58 +0000 (02:30 -0600)]
Merge pull request #8189 from adam4130/update-boost
Updated boost::unordered_map/set to std library
Wolfgang Bangerth [Thu, 16 May 2019 15:32:33 +0000 (09:32 -0600)]
Minor updates to the AD page.
Just trying to educate myself about this page.
Martin Kronbichler [Fri, 17 May 2019 07:12:01 +0000 (09:12 +0200)]
Merge pull request #8212 from tjhei/doc_colon_eq
doxygen: use coloneq in tutorials
Matthias Maier [Fri, 17 May 2019 01:04:07 +0000 (20:04 -0500)]
Merge pull request #8191 from kronbichler/transfinite_manifold_robustness
Make TransfiniteInterpolationManifold more robust
Timo Heister [Thu, 16 May 2019 20:23:46 +0000 (14:23 -0600)]
doxygen: use coloneq in tutorials
Matthias Maier [Thu, 16 May 2019 20:12:16 +0000 (15:12 -0500)]
Merge pull request #8209 from masterleinad/trilinos_12_14_vector_adaptor
Add vector_adaptor_02 Trilinos-12.14.1 variant
Matthias Maier [Thu, 16 May 2019 20:11:50 +0000 (15:11 -0500)]
Merge pull request #8208 from tjhei/add_some_tutorial_keywords
step-63 typo and add some tutorial keywords
Matthias Maier [Thu, 16 May 2019 20:11:22 +0000 (15:11 -0500)]
Merge pull request #8207 from tjhei/step63changelog_into_release
move changelog entry for step-63
Matthias Maier [Thu, 16 May 2019 20:10:19 +0000 (15:10 -0500)]
Merge pull request #8200 from tamiko/adolc_guard
CMake: Add a safeguard that disables ADOL-C in case SEACASChaco is enabled
Martin Kronbichler [Thu, 16 May 2019 19:56:20 +0000 (21:56 +0200)]
Adjust tolerance in push_forward
Daniel Arndt [Thu, 16 May 2019 19:48:14 +0000 (15:48 -0400)]
Add vector_adaptor_02 Trilinos-12.14.1 variant
Timo Heister [Thu, 16 May 2019 19:45:41 +0000 (13:45 -0600)]
Merge pull request #8205 from jppelteret/sd-doc_03
Remove doxygen format from a comment block
Martin Kronbichler [Thu, 16 May 2019 07:39:54 +0000 (09:39 +0200)]
Add changelog
Martin Kronbichler [Thu, 16 May 2019 07:37:18 +0000 (09:37 +0200)]
Three new test cases to verify the transfinite manifold
Timo Heister [Thu, 16 May 2019 19:15:12 +0000 (13:15 -0600)]
step-63 typo and add some tutorial keywords
Timo Heister [Wed, 15 May 2019 16:08:48 +0000 (10:08 -0600)]
9.1: move changelog entry for step-63
Jean-Paul Pelteret [Thu, 16 May 2019 18:24:10 +0000 (20:24 +0200)]
Remove doxygen format from a comment block
Jean-Paul Pelteret [Thu, 16 May 2019 17:55:08 +0000 (19:55 +0200)]
Merge pull request #8202 from tjhei/fix_at_name_tags
fix doxygen @name tags
Timo Heister [Thu, 16 May 2019 17:46:53 +0000 (11:46 -0600)]
fix name
Timo Heister [Thu, 16 May 2019 17:05:42 +0000 (11:05 -0600)]
fix doxygen @name tags
Jean-Paul Pelteret [Thu, 16 May 2019 17:05:46 +0000 (19:05 +0200)]
Merge pull request #8201 from tjhei/doc_remove_at_name_hack
clang-format: do not break @name lines
Timo Heister [Thu, 16 May 2019 16:38:53 +0000 (10:38 -0600)]
clang-format: do not break @name lines
remove hack in scratch_data and add @name to the list of items not to
break automatically.
note: I hate having to fight clang-format.
Matthias Maier [Thu, 16 May 2019 15:33:57 +0000 (10:33 -0500)]
CMake: Add a safeguard that disables ADOL-C in case SEACASChaco is enabled
Matthias Maier [Thu, 16 May 2019 15:09:02 +0000 (10:09 -0500)]
Merge pull request #8195 from jppelteret/scratch_data-doc_01
Fix documentation in ScratchData
adam4130 [Thu, 16 May 2019 13:18:29 +0000 (07:18 -0600)]
Fixed indentation
Jean-Paul Pelteret [Thu, 16 May 2019 09:27:03 +0000 (11:27 +0200)]
Fix documentation in ScratchData
Jean-Paul Pelteret [Thu, 16 May 2019 08:56:10 +0000 (10:56 +0200)]
Merge pull request #8193 from bangerth/typo
Fix a typo.
Wolfgang Bangerth [Thu, 16 May 2019 08:09:17 +0000 (02:09 -0600)]
Fix a typo.
Martin Kronbichler [Thu, 16 May 2019 07:36:56 +0000 (09:36 +0200)]
Make the transfinite manifold more robust
Matthias Maier [Thu, 16 May 2019 04:31:49 +0000 (23:31 -0500)]
Merge pull request #8188 from tjhei/undeprecate_get_mg_dofs
undeprecate get_mg_dof_indices
adam4130 [Thu, 16 May 2019 02:49:29 +0000 (20:49 -0600)]
Updated boost::unordered_map/set to std library
Timo Heister [Wed, 15 May 2019 20:00:20 +0000 (14:00 -0600)]
undeprecate get_mg_dof_indices
fixes #7887
While the general function makes sense in assembly, this function is
useful in other situations and makes code more expressive.
Wolfgang Bangerth [Wed, 15 May 2019 19:22:28 +0000 (13:22 -0600)]
Merge pull request #8178 from tjhei/step63-fix
followup small step-63 edits
Wolfgang Bangerth [Wed, 15 May 2019 19:20:04 +0000 (13:20 -0600)]
Merge pull request #8186 from tjhei/doxygen_fixes6
doxygen: two broken lists
Wolfgang Bangerth [Wed, 15 May 2019 19:18:57 +0000 (13:18 -0600)]
Merge pull request #8181 from tjhei/examples_folder_other_ccs
examples: ignore temporary cc files in cmake
Timo Heister [Wed, 15 May 2019 17:31:32 +0000 (11:31 -0600)]
doxygen: two broken lists
Timo Heister [Wed, 15 May 2019 16:05:30 +0000 (10:05 -0600)]
examples: ignore temporary cc files in cmake
I had an editor leave a temporary cc file in the example directory. This
caused cmake/make to fail in hilarious ways. To try it yourself:
``touch examples/step-63/a#.cc``
By reducing the glob to files that are of the form "step-*.cc", we
should be able to avoid this problem. In my case the file was
".#step-63.cc".
Timo Heister [Wed, 15 May 2019 15:50:53 +0000 (09:50 -0600)]
followup small step-63 edits
Matthias Maier [Wed, 15 May 2019 15:38:01 +0000 (10:38 -0500)]
Merge pull request #8177 from masterleinad/tutorial_description_61_64
Add description for step-61 and step-64
Daniel Arndt [Wed, 15 May 2019 12:54:12 +0000 (08:54 -0400)]
Add description for step-61 and step-64
Martin Kronbichler [Wed, 15 May 2019 12:04:04 +0000 (14:04 +0200)]
Merge pull request #8079 from tcclevenger/step63-documentation
Step-63 Documentation
Martin Kronbichler [Wed, 15 May 2019 11:53:56 +0000 (13:53 +0200)]
Merge pull request #8173 from masterleinad/fix_general_data_storage
Fix general_data_storage test
Daniel Arndt [Wed, 15 May 2019 04:28:57 +0000 (06:28 +0200)]
Fix general_data_storage test
David Wells [Wed, 15 May 2019 04:23:44 +0000 (00:23 -0400)]
Merge pull request #8171 from tjhei/doxygen_fixes5
fix doxygen formula errors
Timo Heister [Tue, 14 May 2019 21:51:40 +0000 (15:51 -0600)]
step-32 text in formula spacing
Timo Heister [Tue, 14 May 2019 21:25:46 +0000 (15:25 -0600)]
two more warnings
Timo Heister [Tue, 14 May 2019 21:17:56 +0000 (15:17 -0600)]
fix doxygen formula errors
Timo Heister [Tue, 14 May 2019 17:43:28 +0000 (11:43 -0600)]
small fixes
tcclevenger [Tue, 14 May 2019 17:15:59 +0000 (11:15 -0600)]
fix right test function and Peclet def
Timo Heister [Tue, 14 May 2019 03:44:14 +0000 (21:44 -0600)]
address change requests
tcclevenger [Mon, 13 May 2019 23:46:22 +0000 (17:46 -0600)]
Intro and small fixes
Timo Heister [Mon, 13 May 2019 20:08:45 +0000 (14:08 -0600)]
Intro and Result fixes
tcclevenger [Mon, 13 May 2019 17:13:57 +0000 (11:13 -0600)]
changes for results.dox, intro outline, corrections
Timo Heister [Sun, 12 May 2019 16:57:07 +0000 (10:57 -0600)]
fix prm formatting, expand prm documentation, doc changes, hook in step-63
tcclevenger [Fri, 10 May 2019 19:19:57 +0000 (13:19 -0600)]
Changelog, prm fixes, initial docs, add new parameters
Martin Kronbichler [Tue, 14 May 2019 15:35:12 +0000 (17:35 +0200)]
Merge pull request #8168 from drwells/unify-subscriptor-log
Unify the log entry for Subscriptor.
David Wells [Tue, 14 May 2019 14:23:24 +0000 (10:23 -0400)]
Unify the log entry for Subscriptor.
The remark about rvalue references is no longer correct since we
switched, after the ban on rvalue references, to storing a
std::string (which permits rvalues once more).
Martin Kronbichler [Tue, 14 May 2019 14:16:42 +0000 (16:16 +0200)]
Merge pull request #8166 from tamiko/update_version_requirement
Require the current version of deal.II.
Matthias Maier [Tue, 14 May 2019 14:07:37 +0000 (09:07 -0500)]
Require the current version of deal.II.
Martin Kronbichler [Tue, 14 May 2019 14:05:04 +0000 (16:05 +0200)]
Merge pull request #8165 from tamiko/master
update VERSION
Matthias Maier [Tue, 14 May 2019 13:59:02 +0000 (08:59 -0500)]
update VERSION
Martin Kronbichler [Tue, 14 May 2019 13:56:07 +0000 (15:56 +0200)]
Merge pull request #8164 from tamiko/update_tag_file
Update TAG file
Martin Kronbichler [Tue, 14 May 2019 13:52:16 +0000 (15:52 +0200)]
Merge pull request #8163 from tamiko/update-changes-file
Replace individual files by one changelog for the whole release.
Matthias Maier [Tue, 14 May 2019 13:49:07 +0000 (08:49 -0500)]
Update TAG file
Matthias Maier [Tue, 14 May 2019 13:46:30 +0000 (08:46 -0500)]
Remove now obsolete files.
Matthias Maier [Tue, 14 May 2019 13:46:05 +0000 (08:46 -0500)]
Update the changelog file for the release.
Matthias Maier [Tue, 14 May 2019 12:47:41 +0000 (07:47 -0500)]
Merge pull request #8158 from kronbichler/fix_trilinos_precondition_test
Adapt test file for Trilinos IC precondition
Martin Kronbichler [Tue, 14 May 2019 12:42:30 +0000 (14:42 +0200)]
Merge pull request #8159 from kronbichler/fix_grid_tools_guess_pt_owner_02
Correct memory access in grid_tools_guess_pt_owner_02
Martin Kronbichler [Tue, 14 May 2019 12:26:16 +0000 (14:26 +0200)]
Merge pull request #8160 from jppelteret/ad-band_aid_sacado_test
Band-aid for a failing AD test
Jean-Paul Pelteret [Tue, 14 May 2019 12:02:15 +0000 (14:02 +0200)]
Band-aid for a failing AD test
Sacado::Rad::Advar<Sacado::Fad::Dfad<double>> fails for the second derivatives (nan) with the current evaluation point. This fixes the test, but one still wonders what the underlying issue is :-/
Bruno Turcksin [Tue, 14 May 2019 12:13:36 +0000 (08:13 -0400)]
Merge pull request #8157 from kronbichler/improve-step-59
Fix some typos in results of step-59
Martin Kronbichler [Tue, 14 May 2019 11:43:20 +0000 (13:43 +0200)]
Merge pull request #8154 from tamiko/deuglify_step_42
deuglify step-42
Martin Kronbichler [Tue, 14 May 2019 10:53:17 +0000 (12:53 +0200)]
Merge pull request #8151 from masterleinad/fix_icc_19_warning
Avoid ICC-19 warning
Martin Kronbichler [Tue, 14 May 2019 10:07:28 +0000 (12:07 +0200)]
Correct memory access in grid_tools_guess_pt_owner_02
Martin Kronbichler [Tue, 14 May 2019 09:10:03 +0000 (11:10 +0200)]
Adapt test file for Trilinos IC precondition
Martin Kronbichler [Tue, 14 May 2019 08:40:33 +0000 (10:40 +0200)]
Fix some typos in results of step-59
Martin Kronbichler [Tue, 14 May 2019 07:15:47 +0000 (09:15 +0200)]
Merge pull request #8135 from kronbichler/gcc9-warning-0
gcc9 warning: Provide copy constructor for class with operator=
Timo Heister [Tue, 14 May 2019 05:23:09 +0000 (23:23 -0600)]
Merge pull request #8140 from tamiko/cppcheck-1
cppcheck: Fix include/deal.II/algorithms/general_data_storage.h
Matthias Maier [Tue, 14 May 2019 05:18:59 +0000 (00:18 -0500)]
Merge pull request #8155 from tjhei/tutorial_improvements
improve tutorial layouts
Timo Heister [Tue, 14 May 2019 05:10:29 +0000 (23:10 -0600)]
improve tutorial layouts
- remove a TODO
- replace aspect URL and use ASPECT not Aspect
- fix some formulas
- use table headers
Matthias Maier [Tue, 14 May 2019 05:06:20 +0000 (00:06 -0500)]
deuglify step-42
Matthias Maier [Tue, 14 May 2019 04:18:55 +0000 (23:18 -0500)]
Merge pull request #8148 from drwells/disable-fp-exceptions-hdf5
Disable floating point exceptions in two HDF5 tests.
Daniel Arndt [Tue, 14 May 2019 03:40:19 +0000 (05:40 +0200)]
Avoid ICC-19 warning
David Wells [Tue, 14 May 2019 03:21:44 +0000 (23:21 -0400)]
Merge pull request #8150 from masterleinad/missing_header_symengine
Add missing header in symengine_tensor_operations.h
Daniel Arndt [Tue, 14 May 2019 03:02:38 +0000 (05:02 +0200)]
Add missing header in symengine_tensor_operations.h
Daniel Arndt [Tue, 14 May 2019 02:16:43 +0000 (22:16 -0400)]
Merge pull request #8147 from kronbichler/fix_two_tests
Make two tests more stable
Daniel Arndt [Tue, 14 May 2019 01:16:36 +0000 (21:16 -0400)]
Merge pull request #8142 from drwells/cppcheck-9.1
Cppcheck 9.1
Daniel Arndt [Mon, 13 May 2019 22:52:18 +0000 (00:52 +0200)]
Create vector before assigning
Timo Heister [Mon, 13 May 2019 22:44:16 +0000 (16:44 -0600)]
Merge pull request #8149 from drwells/add-6774-changelog
Add a changelog entry for 6774.
Matthias Maier [Mon, 13 May 2019 22:41:12 +0000 (17:41 -0500)]
Merge pull request #8139 from tamiko/disable-gcc-9-warning
Ignore -Wdeprecated-copy in external headers
Matthias Maier [Mon, 13 May 2019 22:34:56 +0000 (17:34 -0500)]
fix changelog entry format
Matthias Maier [Mon, 13 May 2019 21:23:10 +0000 (16:23 -0500)]
Cppcheck: Fix general_data_storage.h
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