]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
5 years agoFixed doi for step-60 8272/head
Giovanni Alzetta [Wed, 22 May 2019 09:23:31 +0000 (11:23 +0200)]
Fixed doi for step-60

5 years agoMerge pull request #8265 from masterleinad/gmsh_mesh_format_4_1
Matthias Maier [Tue, 21 May 2019 17:57:38 +0000 (12:57 -0500)]
Merge pull request #8265 from masterleinad/gmsh_mesh_format_4_1

Allow for gmsh mesh format 4.1

5 years agodoc: move news entry 8265/head
Matthias Maier [Tue, 21 May 2019 17:23:09 +0000 (12:23 -0500)]
doc: move news entry

5 years agoUpdate doc/news/changes/minor/20190521DanielArndt
Daniel Arndt [Tue, 21 May 2019 16:17:24 +0000 (12:17 -0400)]
Update doc/news/changes/minor/20190521DanielArndt

Co-Authored-By: Martin Kronbichler <kronbichler@lnm.mw.tum.de>
5 years agoAllow for gmsh mesh format 4.1
Daniel Arndt [Tue, 21 May 2019 15:48:33 +0000 (17:48 +0200)]
Allow for gmsh mesh format 4.1

5 years agoMerge pull request #8263 from tamiko/fix_test_concurrency
Martin Kronbichler [Tue, 21 May 2019 15:05:42 +0000 (17:05 +0200)]
Merge pull request #8263 from tamiko/fix_test_concurrency

sacado: fix test concurrency

5 years agosacado: fix test concurrency 8263/head
Matthias Maier [Tue, 21 May 2019 14:58:03 +0000 (09:58 -0500)]
sacado: fix test concurrency

5 years agoMerge pull request #8261 from tamiko/pr_8260
David Wells [Tue, 21 May 2019 11:35:10 +0000 (07:35 -0400)]
Merge pull request #8261 from tamiko/pr_8260

[master] Take over #8260

5 years agoCleanup documentation: find_common_subspace() 8261/head
Marc Fehling [Mon, 20 May 2019 19:43:45 +0000 (21:43 +0200)]
Cleanup documentation: find_common_subspace()

5 years agoMerge pull request #8257 from drwells/add-class-doc-stubs
Wolfgang Bangerth [Tue, 21 May 2019 01:09:52 +0000 (19:09 -0600)]
Merge pull request #8257 from drwells/add-class-doc-stubs

Add two brief class descriptions.

5 years agoMerge pull request #8256 from drwells/update-91-changes
Matthias Maier [Mon, 20 May 2019 20:09:43 +0000 (15:09 -0500)]
Merge pull request #8256 from drwells/update-91-changes

Update 9.1 changes

5 years agoAdd two brief class descriptions. 8257/head
David Wells [Mon, 20 May 2019 19:58:46 +0000 (15:58 -0400)]
Add two brief class descriptions.

These are mentioned in other files and we need at least a stub here to
make the classes show up in doxygen.

5 years agoImprove a few 9.1 changelog entries. 8256/head
David Wells [Mon, 20 May 2019 19:55:38 +0000 (15:55 -0400)]
Improve a few 9.1 changelog entries.

1. Add a link to GinkgoWrappers::SolverBase
2. Fix description of Subscriptor changes
3. delete some duplicate changelog entries
4. Use %Function where appropriate
5. Minor grammar fixes

5 years agoFix doxygen links in the 9.1 changelog.
David Wells [Mon, 20 May 2019 19:55:03 +0000 (15:55 -0400)]
Fix doxygen links in the 9.1 changelog.

5 years agoMerge pull request #8230 from tamiko/disable_two_tests
Martin Kronbichler [Sun, 19 May 2019 15:48:39 +0000 (17:48 +0200)]
Merge pull request #8230 from tamiko/disable_two_tests

Disable two ADOL-C tests in release configuration

5 years agoMerge pull request #8242 from bangerth/64.2
Martin Kronbichler [Sun, 19 May 2019 15:47:50 +0000 (17:47 +0200)]
Merge pull request #8242 from bangerth/64.2

Rework the first part of step-64.

5 years agoMerge pull request #8237 from bangerth/64
Daniel Arndt [Sun, 19 May 2019 14:54:50 +0000 (10:54 -0400)]
Merge pull request #8237 from bangerth/64

Update the introduction to step-64.

5 years agoMerge pull request #8244 from bangerth/64.4
Daniel Arndt [Sun, 19 May 2019 14:43:32 +0000 (10:43 -0400)]
Merge pull request #8244 from bangerth/64.4

Step-64 also depends on step-40.

5 years agoMerge pull request #8247 from bangerth/dep
Martin Kronbichler [Sun, 19 May 2019 14:04:08 +0000 (16:04 +0200)]
Merge pull request #8247 from bangerth/dep

Fix a dependency between tutorial programs.

5 years agoMerge pull request #8238 from bangerth/51
Martin Kronbichler [Sun, 19 May 2019 14:02:34 +0000 (16:02 +0200)]
Merge pull request #8238 from bangerth/51

Mention step-61 in the introduction of step-51.

5 years agoFix a dependency between tutorial programs. 8247/head
Wolfgang Bangerth [Sun, 19 May 2019 13:38:31 +0000 (07:38 -0600)]
Fix a dependency between tutorial programs.

The format in which this was previously stated was just wrong.

5 years agoStep-64 also depends on step-40. 8244/head
Wolfgang Bangerth [Sat, 18 May 2019 14:58:02 +0000 (08:58 -0600)]
Step-64 also depends on step-40.

5 years agoMore updates of examples/step-64/step-64.cu 8242/head
Wolfgang Bangerth [Sun, 19 May 2019 13:21:20 +0000 (07:21 -0600)]
More updates of examples/step-64/step-64.cu

Co-Authored-By: Daniel Arndt <arndtd@ornl.gov>
5 years agoUpdate the introduction to step-64. 8237/head
Wolfgang Bangerth [Sat, 18 May 2019 10:45:17 +0000 (04:45 -0600)]
Update the introduction to step-64.

While there also adjust the dependencies.

5 years agoMerge pull request #8236 from bangerth/61
Martin Kronbichler [Sun, 19 May 2019 09:00:24 +0000 (11:00 +0200)]
Merge pull request #8236 from bangerth/61

Fix the dependencies of step-61.

5 years agoMerge pull request #8246 from masterleinad/change_cudawrappers_mf_point_type
Daniel Arndt [Sat, 18 May 2019 23:52:12 +0000 (19:52 -0400)]
Merge pull request #8246 from masterleinad/change_cudawrappers_mf_point_type

Change CUDAWrappers::MatrixFree::point_type to Point

5 years agoClarify size of coef
Daniel Arndt [Sat, 18 May 2019 22:42:51 +0000 (00:42 +0200)]
Clarify size of coef

5 years agoMerge pull request #8243 from bangerth/64.3
Daniel Arndt [Sat, 18 May 2019 19:17:20 +0000 (15:17 -0400)]
Merge pull request #8243 from bangerth/64.3

Update the results section of step-64.

5 years agoChange CUDAWrappers::MatrixFree::point_type to Point 8246/head
Daniel Arndt [Sat, 18 May 2019 17:55:49 +0000 (19:55 +0200)]
Change CUDAWrappers::MatrixFree::point_type to Point

5 years agoMerge pull request #8239 from bangerth/update
David Wells [Sat, 18 May 2019 17:33:30 +0000 (13:33 -0400)]
Merge pull request #8239 from bangerth/update

Update a comment in the doxygen options file.

5 years agoUpdate the results section of step-64. 8243/head
Wolfgang Bangerth [Sat, 18 May 2019 14:55:31 +0000 (08:55 -0600)]
Update the results section of step-64.

5 years agoUpdate the rest of the code.
Wolfgang Bangerth [Sat, 18 May 2019 14:38:44 +0000 (08:38 -0600)]
Update the rest of the code.

5 years agoRework the first part of step-64.
Wolfgang Bangerth [Sat, 18 May 2019 12:08:39 +0000 (06:08 -0600)]
Rework the first part of step-64.

5 years agoUpdate a comment in the doxygen options file. 8239/head
Wolfgang Bangerth [Sat, 18 May 2019 11:36:25 +0000 (05:36 -0600)]
Update a comment in the doxygen options file.

5 years agoMention step-61 in the introduction of step-51. 8238/head
Wolfgang Bangerth [Sat, 18 May 2019 10:45:56 +0000 (04:45 -0600)]
Mention step-61 in the introduction of step-51.

5 years agoFix the dependencies of step-61. 8236/head
Wolfgang Bangerth [Sat, 18 May 2019 10:20:24 +0000 (04:20 -0600)]
Fix the dependencies of step-61.

This program doesn't really build on step-20 (it solves the Darcy equation,
but not in mixed form) nor really on step-7 (other than the fact that it
computes errors).

5 years agoMerge pull request #8235 from tjhei/step63-followup
Wolfgang Bangerth [Fri, 17 May 2019 20:22:53 +0000 (14:22 -0600)]
Merge pull request #8235 from tjhei/step63-followup

step-63 documention follow-up

5 years agoMerge pull request #8234 from tjhei/clarify_a_comment
Wolfgang Bangerth [Fri, 17 May 2019 20:22:31 +0000 (14:22 -0600)]
Merge pull request #8234 from tjhei/clarify_a_comment

clarify a comment

5 years agostep-63 documention follow-up 8235/head
Timo Heister [Fri, 17 May 2019 20:13:39 +0000 (14:13 -0600)]
step-63 documention follow-up

see #8225

5 years agoclarify a comment 8234/head
Timo Heister [Fri, 17 May 2019 20:03:37 +0000 (14:03 -0600)]
clarify a comment

found while trying to understand the code

5 years agoMerge pull request #8225 from bangerth/63.1
Matthias Maier [Fri, 17 May 2019 19:06:18 +0000 (14:06 -0500)]
Merge pull request #8225 from bangerth/63.1

Updates to the step-63 introduction.

5 years agoDisable two ADOL-C tests in release configuration 8230/head
Matthias Maier [Fri, 17 May 2019 18:46:57 +0000 (13:46 -0500)]
Disable two ADOL-C tests in release configuration

It turns out that some optimizing compilers (gcc-7 onwards) are very
happy in happily optimizing away in case of undefined behavior (that we
are apparently encountering). Let's just disable these tests in release
configuration.

5 years agoUpdates to the step-63 introduction. 8225/head
Wolfgang Bangerth [Fri, 17 May 2019 14:42:37 +0000 (08:42 -0600)]
Updates to the step-63 introduction.

5 years agoMerge pull request #8228 from bangerth/63.3
Timo Heister [Fri, 17 May 2019 16:47:18 +0000 (10:47 -0600)]
Merge pull request #8228 from bangerth/63.3

Updates to the step-63 results section.

5 years agoMerge pull request #8224 from masterleinad/general_data_storage_gcc-9
David Wells [Fri, 17 May 2019 15:48:36 +0000 (11:48 -0400)]
Merge pull request #8224 from masterleinad/general_data_storage_gcc-9

gcc-9 variant for general_data_storage_01

5 years agoUpdates to the step-63 results section. 8228/head
Wolfgang Bangerth [Fri, 17 May 2019 15:09:05 +0000 (09:09 -0600)]
Updates to the step-63 results section.

5 years agogcc-9 variant for general_data_storage_01 8224/head
Daniel Arndt [Fri, 17 May 2019 14:40:02 +0000 (10:40 -0400)]
gcc-9 variant for general_data_storage_01

5 years agoMerge pull request #8204 from bangerth/update
Jean-Paul Pelteret [Fri, 17 May 2019 12:40:15 +0000 (14:40 +0200)]
Merge pull request #8204 from bangerth/update

Minor updates to the AD page.

5 years agoMerge pull request #8218 from kronbichler/adjust_documentation
Wolfgang Bangerth [Fri, 17 May 2019 09:12:41 +0000 (03:12 -0600)]
Merge pull request #8218 from kronbichler/adjust_documentation

Move changelog entry to proper file

5 years agoMove changelog entry into proper place 8218/head
Martin Kronbichler [Fri, 17 May 2019 08:32:41 +0000 (10:32 +0200)]
Move changelog entry into proper place

5 years agoMerge pull request #8189 from adam4130/update-boost
Wolfgang Bangerth [Fri, 17 May 2019 08:30:58 +0000 (02:30 -0600)]
Merge pull request #8189 from adam4130/update-boost

Updated boost::unordered_map/set to std library

5 years agoMinor updates to the AD page. 8204/head
Wolfgang Bangerth [Thu, 16 May 2019 15:32:33 +0000 (09:32 -0600)]
Minor updates to the AD page.

Just trying to educate myself about this page.

5 years agoMerge pull request #8212 from tjhei/doc_colon_eq
Martin Kronbichler [Fri, 17 May 2019 07:12:01 +0000 (09:12 +0200)]
Merge pull request #8212 from tjhei/doc_colon_eq

doxygen: use coloneq in tutorials

5 years agoMerge pull request #8191 from kronbichler/transfinite_manifold_robustness
Matthias Maier [Fri, 17 May 2019 01:04:07 +0000 (20:04 -0500)]
Merge pull request #8191 from kronbichler/transfinite_manifold_robustness

Make TransfiniteInterpolationManifold more robust

5 years agodoxygen: use coloneq in tutorials 8212/head
Timo Heister [Thu, 16 May 2019 20:23:46 +0000 (14:23 -0600)]
doxygen: use coloneq in tutorials

5 years agoMerge pull request #8209 from masterleinad/trilinos_12_14_vector_adaptor
Matthias Maier [Thu, 16 May 2019 20:12:16 +0000 (15:12 -0500)]
Merge pull request #8209 from masterleinad/trilinos_12_14_vector_adaptor

Add vector_adaptor_02 Trilinos-12.14.1 variant

5 years agoMerge pull request #8208 from tjhei/add_some_tutorial_keywords
Matthias Maier [Thu, 16 May 2019 20:11:50 +0000 (15:11 -0500)]
Merge pull request #8208 from tjhei/add_some_tutorial_keywords

step-63 typo and add some tutorial keywords

5 years agoMerge pull request #8207 from tjhei/step63changelog_into_release
Matthias Maier [Thu, 16 May 2019 20:11:22 +0000 (15:11 -0500)]
Merge pull request #8207 from tjhei/step63changelog_into_release

move changelog entry for step-63

5 years agoMerge pull request #8200 from tamiko/adolc_guard
Matthias Maier [Thu, 16 May 2019 20:10:19 +0000 (15:10 -0500)]
Merge pull request #8200 from tamiko/adolc_guard

CMake: Add a safeguard that disables ADOL-C in case SEACASChaco is enabled

5 years agoAdjust tolerance in push_forward 8191/head
Martin Kronbichler [Thu, 16 May 2019 19:56:20 +0000 (21:56 +0200)]
Adjust tolerance in push_forward

5 years agoAdd vector_adaptor_02 Trilinos-12.14.1 variant 8209/head
Daniel Arndt [Thu, 16 May 2019 19:48:14 +0000 (15:48 -0400)]
Add vector_adaptor_02 Trilinos-12.14.1 variant

5 years agoMerge pull request #8205 from jppelteret/sd-doc_03
Timo Heister [Thu, 16 May 2019 19:45:41 +0000 (13:45 -0600)]
Merge pull request #8205 from jppelteret/sd-doc_03

Remove doxygen format from a comment block

5 years agoAdd changelog
Martin Kronbichler [Thu, 16 May 2019 07:39:54 +0000 (09:39 +0200)]
Add changelog

5 years agoThree new test cases to verify the transfinite manifold
Martin Kronbichler [Thu, 16 May 2019 07:37:18 +0000 (09:37 +0200)]
Three new test cases to verify the transfinite manifold

5 years agostep-63 typo and add some tutorial keywords 8208/head
Timo Heister [Thu, 16 May 2019 19:15:12 +0000 (13:15 -0600)]
step-63 typo and add some tutorial keywords

5 years ago9.1: move changelog entry for step-63 8207/head
Timo Heister [Wed, 15 May 2019 16:08:48 +0000 (10:08 -0600)]
9.1: move changelog entry for step-63

5 years agoRemove doxygen format from a comment block 8205/head
Jean-Paul Pelteret [Thu, 16 May 2019 18:24:10 +0000 (20:24 +0200)]
Remove doxygen format from a comment block

5 years agoMerge pull request #8202 from tjhei/fix_at_name_tags
Jean-Paul Pelteret [Thu, 16 May 2019 17:55:08 +0000 (19:55 +0200)]
Merge pull request #8202 from tjhei/fix_at_name_tags

fix doxygen @name tags

5 years agofix name 8202/head
Timo Heister [Thu, 16 May 2019 17:46:53 +0000 (11:46 -0600)]
fix name

5 years agofix doxygen @name tags
Timo Heister [Thu, 16 May 2019 17:05:42 +0000 (11:05 -0600)]
fix doxygen @name tags

5 years agoMerge pull request #8201 from tjhei/doc_remove_at_name_hack
Jean-Paul Pelteret [Thu, 16 May 2019 17:05:46 +0000 (19:05 +0200)]
Merge pull request #8201 from tjhei/doc_remove_at_name_hack

clang-format: do not break @name lines

5 years agoclang-format: do not break @name lines 8201/head
Timo Heister [Thu, 16 May 2019 16:38:53 +0000 (10:38 -0600)]
clang-format: do not break @name lines

remove hack in scratch_data and add @name to the list of items not to
break automatically.

note: I hate having to fight clang-format.

5 years agoCMake: Add a safeguard that disables ADOL-C in case SEACASChaco is enabled 8200/head
Matthias Maier [Thu, 16 May 2019 15:33:57 +0000 (10:33 -0500)]
CMake: Add a safeguard that disables ADOL-C in case SEACASChaco is enabled

5 years agoMerge pull request #8195 from jppelteret/scratch_data-doc_01
Matthias Maier [Thu, 16 May 2019 15:09:02 +0000 (10:09 -0500)]
Merge pull request #8195 from jppelteret/scratch_data-doc_01

Fix documentation in ScratchData

5 years agoFixed indentation 8189/head
adam4130 [Thu, 16 May 2019 13:18:29 +0000 (07:18 -0600)]
Fixed indentation

5 years agoFix documentation in ScratchData 8195/head
Jean-Paul Pelteret [Thu, 16 May 2019 09:27:03 +0000 (11:27 +0200)]
Fix documentation in ScratchData

5 years agoMerge pull request #8193 from bangerth/typo
Jean-Paul Pelteret [Thu, 16 May 2019 08:56:10 +0000 (10:56 +0200)]
Merge pull request #8193 from bangerth/typo

Fix a typo.

5 years agoFix a typo. 8193/head
Wolfgang Bangerth [Thu, 16 May 2019 08:09:17 +0000 (02:09 -0600)]
Fix a typo.

5 years agoMake the transfinite manifold more robust
Martin Kronbichler [Thu, 16 May 2019 07:36:56 +0000 (09:36 +0200)]
Make the transfinite manifold more robust

5 years agoMerge pull request #8188 from tjhei/undeprecate_get_mg_dofs
Matthias Maier [Thu, 16 May 2019 04:31:49 +0000 (23:31 -0500)]
Merge pull request #8188 from tjhei/undeprecate_get_mg_dofs

undeprecate get_mg_dof_indices

5 years agoUpdated boost::unordered_map/set to std library
adam4130 [Thu, 16 May 2019 02:49:29 +0000 (20:49 -0600)]
Updated boost::unordered_map/set to std library

5 years agoundeprecate get_mg_dof_indices 8188/head
Timo Heister [Wed, 15 May 2019 20:00:20 +0000 (14:00 -0600)]
undeprecate get_mg_dof_indices

fixes #7887
While the general function makes sense in assembly, this function is
useful in other situations and makes code more expressive.

5 years agoMerge pull request #8178 from tjhei/step63-fix
Wolfgang Bangerth [Wed, 15 May 2019 19:22:28 +0000 (13:22 -0600)]
Merge pull request #8178 from tjhei/step63-fix

followup small step-63 edits

5 years agoMerge pull request #8186 from tjhei/doxygen_fixes6
Wolfgang Bangerth [Wed, 15 May 2019 19:20:04 +0000 (13:20 -0600)]
Merge pull request #8186 from tjhei/doxygen_fixes6

doxygen: two broken lists

5 years agoMerge pull request #8181 from tjhei/examples_folder_other_ccs
Wolfgang Bangerth [Wed, 15 May 2019 19:18:57 +0000 (13:18 -0600)]
Merge pull request #8181 from tjhei/examples_folder_other_ccs

examples: ignore temporary cc files in cmake

5 years agodoxygen: two broken lists 8186/head
Timo Heister [Wed, 15 May 2019 17:31:32 +0000 (11:31 -0600)]
doxygen: two broken lists

5 years agoexamples: ignore temporary cc files in cmake 8181/head
Timo Heister [Wed, 15 May 2019 16:05:30 +0000 (10:05 -0600)]
examples: ignore temporary cc files in cmake

I had an editor leave a temporary cc file in the example directory. This
caused cmake/make to fail in hilarious ways. To try it yourself:
``touch examples/step-63/a#.cc``

By reducing the glob to files that are of the form "step-*.cc", we
should be able to avoid this problem. In my case the file was
".#step-63.cc".

5 years agofollowup small step-63 edits 8178/head
Timo Heister [Wed, 15 May 2019 15:50:53 +0000 (09:50 -0600)]
followup small step-63 edits

5 years agoMerge pull request #8177 from masterleinad/tutorial_description_61_64
Matthias Maier [Wed, 15 May 2019 15:38:01 +0000 (10:38 -0500)]
Merge pull request #8177 from masterleinad/tutorial_description_61_64

Add description for step-61 and step-64

5 years agoAdd description for step-61 and step-64 8177/head
Daniel Arndt [Wed, 15 May 2019 12:54:12 +0000 (08:54 -0400)]
Add description for step-61 and step-64

5 years agoMerge pull request #8079 from tcclevenger/step63-documentation
Martin Kronbichler [Wed, 15 May 2019 12:04:04 +0000 (14:04 +0200)]
Merge pull request #8079 from tcclevenger/step63-documentation

Step-63 Documentation

5 years agoMerge pull request #8173 from masterleinad/fix_general_data_storage
Martin Kronbichler [Wed, 15 May 2019 11:53:56 +0000 (13:53 +0200)]
Merge pull request #8173 from masterleinad/fix_general_data_storage

Fix general_data_storage test

5 years agoFix general_data_storage test 8173/head
Daniel Arndt [Wed, 15 May 2019 04:28:57 +0000 (06:28 +0200)]
Fix general_data_storage test

5 years agoMerge pull request #8171 from tjhei/doxygen_fixes5
David Wells [Wed, 15 May 2019 04:23:44 +0000 (00:23 -0400)]
Merge pull request #8171 from tjhei/doxygen_fixes5

fix doxygen formula errors

5 years agostep-32 text in formula spacing 8171/head
Timo Heister [Tue, 14 May 2019 21:51:40 +0000 (15:51 -0600)]
step-32 text in formula spacing

5 years agotwo more warnings
Timo Heister [Tue, 14 May 2019 21:25:46 +0000 (15:25 -0600)]
two more warnings

5 years agofix doxygen formula errors
Timo Heister [Tue, 14 May 2019 21:17:56 +0000 (15:17 -0600)]
fix doxygen formula errors

5 years agosmall fixes 8079/head
Timo Heister [Tue, 14 May 2019 17:43:28 +0000 (11:43 -0600)]
small fixes

5 years agofix right test function and Peclet def
tcclevenger [Tue, 14 May 2019 17:15:59 +0000 (11:15 -0600)]
fix right test function and Peclet def

5 years agoaddress change requests
Timo Heister [Tue, 14 May 2019 03:44:14 +0000 (21:44 -0600)]
address change requests


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