]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
4 years agoRemove visit add comments 8963/head
Peter Munch [Tue, 5 Nov 2019 22:31:38 +0000 (23:31 +0100)]
Remove visit add comments

4 years agoadd a .visit master file with times
Timo Heister [Tue, 29 Oct 2019 06:54:20 +0000 (07:54 +0100)]
add a .visit master file with times

4 years agopass cycle not name to function
Timo Heister [Tue, 29 Oct 2019 06:53:59 +0000 (07:53 +0100)]
pass cycle not name to function

4 years agoremove dash
Timo Heister [Tue, 29 Oct 2019 06:51:54 +0000 (07:51 +0100)]
remove dash

trailing dashes look ugly as the filename is "solution-_0001" etc.

4 years agoUpdate tutorials to use write_vtu_with_pvtu_record
Peter Munch [Fri, 25 Oct 2019 23:51:26 +0000 (01:51 +0200)]
Update tutorials to use write_vtu_with_pvtu_record

4 years agoMerge pull request #8885 from tjhei/fe_interface_values_3
Wolfgang Bangerth [Fri, 25 Oct 2019 02:46:43 +0000 (20:46 -0600)]
Merge pull request #8885 from tjhei/fe_interface_values_3

FEInterfaceValues: gradients and hessians

4 years agoMerge pull request #8927 from nfehn/cutoff_digits
Daniel Arndt [Thu, 24 Oct 2019 22:57:13 +0000 (18:57 -0400)]
Merge pull request #8927 from nfehn/cutoff_digits

new function Utilities::cutoff_digits()

4 years agoaddress comments 8885/head
Timo Heister [Thu, 24 Oct 2019 20:13:01 +0000 (22:13 +0200)]
address comments

4 years agoMerge pull request #8898 from sophy1029/step-61
Daniel Arndt [Thu, 24 Oct 2019 19:27:52 +0000 (15:27 -0400)]
Merge pull request #8898 from sophy1029/step-61

Step-61 Use FE_DGRT for Darcy velocity

4 years agoMerge pull request #8952 from bangerth/delete
Daniel Arndt [Thu, 24 Oct 2019 19:21:30 +0000 (15:21 -0400)]
Merge pull request #8952 from bangerth/delete

Delete FunctionParse copy constructor.

4 years agoMerge pull request #8946 from elauksap/interpolate_fe_parallel
Wolfgang Bangerth [Thu, 24 Oct 2019 18:41:44 +0000 (12:41 -0600)]
Merge pull request #8946 from elauksap/interpolate_fe_parallel

Make VectorTools::interpolate() working in parallel

4 years agonew function Utilities::cutoff_digits() 8927/head
Niklas Fehn [Fri, 18 Oct 2019 15:54:48 +0000 (17:54 +0200)]
new function Utilities::cutoff_digits()

4 years agoFinal implementation + update documentation and test case 8946/head
Pasquale Africa [Thu, 24 Oct 2019 11:33:25 +0000 (11:33 +0000)]
Final implementation + update documentation and test case

Co-authored-by: Doug Shi-Dong <doug.shidong@gmail.com>
4 years agoAdd related test and changelog + various fixes.
Pasquale Africa [Tue, 22 Oct 2019 01:09:58 +0000 (21:09 -0400)]
Add related test and changelog + various fixes.

Co-authored-by: Doug Shi-Dong <doug.shidong@gmail.com>
4 years agoMake VectorTools::interpolate working in parallel + update documentation.
Pasquale Africa [Tue, 22 Oct 2019 15:17:15 +0000 (15:17 +0000)]
Make VectorTools::interpolate working in parallel + update documentation.

Co-authored-by: Ivan Fumagalli <ivan.fumagalli@polimi.it>
4 years agoAlso delete move constructors/operators. 8952/head
Wolfgang Bangerth [Thu, 24 Oct 2019 16:32:09 +0000 (10:32 -0600)]
Also delete move constructors/operators.

4 years agoAlso delete the FunctionParser operator=.
Wolfgang Bangerth [Thu, 24 Oct 2019 16:21:30 +0000 (10:21 -0600)]
Also delete the FunctionParser operator=.

4 years agoDelete FunctionParse copy constructor.
Wolfgang Bangerth [Thu, 24 Oct 2019 03:20:34 +0000 (21:20 -0600)]
Delete FunctionParse copy constructor.

4 years agoMerge pull request #8954 from tjhei/typo
Martin Kronbichler [Thu, 24 Oct 2019 09:30:35 +0000 (11:30 +0200)]
Merge pull request #8954 from tjhei/typo

fix typos in comments

4 years agofix typos in comments 8954/head
Timo Heister [Thu, 24 Oct 2019 08:00:14 +0000 (10:00 +0200)]
fix typos in comments

nothing else.

4 years agoMerge pull request #8902 from peterrum/gridout-vtk-optional
Luca Heltai [Thu, 24 Oct 2019 07:58:56 +0000 (09:58 +0200)]
Merge pull request #8902 from peterrum/gridout-vtk-optional

Make output cells, faces and co-faces optional in GridOut::write_vtk

4 years agoMerge pull request #8892 from masterleinad/remove_bind_5
Daniel Arndt [Thu, 24 Oct 2019 03:42:34 +0000 (23:42 -0400)]
Merge pull request #8892 from masterleinad/remove_bind_5

Replace std::bind in documentation

4 years agoReplace std::bind in documentation 8892/head
Daniel Arndt [Mon, 7 Oct 2019 02:40:09 +0000 (22:40 -0400)]
Replace std::bind in documentation

4 years agoMerge pull request #8947 from tjhei/free_mpi_comm
Wolfgang Bangerth [Wed, 23 Oct 2019 20:28:33 +0000 (14:28 -0600)]
Merge pull request #8947 from tjhei/free_mpi_comm

new MPI::free_communicator and DuplicatedCommunicator helper

4 years agoMerge pull request #8949 from tjhei/doc_write_vtu_and_pvtu
Timo Heister [Wed, 23 Oct 2019 17:27:51 +0000 (19:27 +0200)]
Merge pull request #8949 from tjhei/doc_write_vtu_and_pvtu

doc: improve write_vtu_with_pvtu_record

4 years agoApply suggestions from code review 8949/head
Timo Heister [Wed, 23 Oct 2019 15:44:49 +0000 (17:44 +0200)]
Apply suggestions from code review

4 years agoMerge pull request #8950 from bangerth/geometry
Timo Heister [Wed, 23 Oct 2019 15:50:13 +0000 (17:50 +0200)]
Merge pull request #8950 from bangerth/geometry

Provide a link to the geometry paper.

4 years agoaddress comments 8947/head
Timo Heister [Wed, 23 Oct 2019 15:43:00 +0000 (17:43 +0200)]
address comments

4 years agoProvide a link to the geometry paper. 8950/head
Wolfgang Bangerth [Wed, 23 Oct 2019 13:41:42 +0000 (07:41 -0600)]
Provide a link to the geometry paper.

4 years agodoc: improve write_vtu_with_pvtu_record
Timo Heister [Wed, 23 Oct 2019 10:52:04 +0000 (12:52 +0200)]
doc: improve write_vtu_with_pvtu_record

4 years agoindent correction 8898/head
Zhuoran Wang [Wed, 23 Oct 2019 03:29:44 +0000 (21:29 -0600)]
indent correction

4 years agoAdd Darcy velocity.
Zhuoran Wang [Mon, 16 Sep 2019 16:41:18 +0000 (10:41 -0600)]
Add Darcy velocity.

4 years agoMerge pull request #8945 from dangars/trilinos_documentation
Daniel Arndt [Tue, 22 Oct 2019 20:37:21 +0000 (16:37 -0400)]
Merge pull request #8945 from dangars/trilinos_documentation

Remove unnecessary trilinos options

4 years agofix test
Timo Heister [Tue, 22 Oct 2019 20:33:50 +0000 (22:33 +0200)]
fix test

4 years agoaddress comments
Timo Heister [Tue, 22 Oct 2019 20:31:37 +0000 (22:31 +0200)]
address comments

4 years agoUpdate trilinos options 8945/head
Daniel Garcia-Sanchez [Tue, 22 Oct 2019 20:20:16 +0000 (22:20 +0200)]
Update trilinos options

4 years agochangelog
Timo Heister [Tue, 22 Oct 2019 20:04:46 +0000 (22:04 +0200)]
changelog

4 years agoadd DuplicatedCommunicator
Timo Heister [Tue, 22 Oct 2019 20:01:14 +0000 (22:01 +0200)]
add DuplicatedCommunicator

4 years agoadd MPI::free_communicator function
Timo Heister [Tue, 22 Oct 2019 19:20:05 +0000 (21:20 +0200)]
add MPI::free_communicator function

4 years agoMake output cells, faces and co-faces optional in GridOut::write_vtk 8902/head
Peter Munch [Fri, 11 Oct 2019 20:46:38 +0000 (22:46 +0200)]
Make output cells, faces and co-faces optional in GridOut::write_vtk

4 years agoMerge pull request #8942 from bangerth/49
David Wells [Tue, 22 Oct 2019 02:10:37 +0000 (22:10 -0400)]
Merge pull request #8942 from bangerth/49

Update the results section of step-49.

4 years agoMerge pull request #8899 from anates/arpack_solver_control
Wolfgang Bangerth [Tue, 22 Oct 2019 01:51:09 +0000 (19:51 -0600)]
Merge pull request #8899 from anates/arpack_solver_control

ArpackSolver sets number of iterations in SolverControl after finishing calculations

4 years agoUpdate the results section of step-49. 8942/head
Wolfgang Bangerth [Tue, 22 Oct 2019 01:44:18 +0000 (19:44 -0600)]
Update the results section of step-49.

4 years agoMerge pull request #8492 from tjhei/step-49-cleanup
Wolfgang Bangerth [Tue, 22 Oct 2019 01:41:36 +0000 (19:41 -0600)]
Merge pull request #8492 from tjhei/step-49-cleanup

step-49: switch to vtu and add possible extensions

4 years agoMerge pull request #8939 from tjhei/point_to_point_mpi_wait_fix
Wolfgang Bangerth [Mon, 21 Oct 2019 20:00:46 +0000 (14:00 -0600)]
Merge pull request #8939 from tjhei/point_to_point_mpi_wait_fix

Fix missing MPI_Wait in compute_point_to_point_communication_pattern

4 years agoMerge pull request #8940 from drwells/step-3-doxygen
Timo Heister [Mon, 21 Oct 2019 18:45:09 +0000 (20:45 +0200)]
Merge pull request #8940 from drwells/step-3-doxygen

Improve and fix some doxygen things in step-3.

4 years agoImprove and fix some doxygen things in step-3. 8940/head
David Wells [Mon, 21 Oct 2019 18:35:19 +0000 (14:35 -0400)]
Improve and fix some doxygen things in step-3.

- use CellAccessor::face_iterators()
- no space after function name
- add some more doxygen links
- fix a missing @endcode

4 years agoFix missing MPI_Wait in compute_point_to_point_communication_pattern 8939/head
Timo Heister [Mon, 21 Oct 2019 18:13:28 +0000 (20:13 +0200)]
Fix missing MPI_Wait in compute_point_to_point_communication_pattern

Remove the early return (we will just execute 0 MPI_Recv) as we forgot
to Wailall. Also add some error checking while I am here.

4 years agoMerge pull request #8935 from tjhei/consensus_get_requesters_barrier
Martin Kronbichler [Mon, 21 Oct 2019 16:34:18 +0000 (18:34 +0200)]
Merge pull request #8935 from tjhei/consensus_get_requesters_barrier

add a barrier to avoid MPI race in ConsensusAlgorithm

4 years agoMerge pull request #8936 from tjhei/partitioner_64bit_overflow
Martin Kronbichler [Mon, 21 Oct 2019 16:26:04 +0000 (18:26 +0200)]
Merge pull request #8936 from tjhei/partitioner_64bit_overflow

avoid 64bit overflow in Partiioner::set_ghost_indices

4 years agoavoid 64bit overflow in Partiioner::set_ghost_indices 8936/head
Timo Heister [Mon, 21 Oct 2019 11:56:39 +0000 (13:56 +0200)]
avoid 64bit overflow in Partiioner::set_ghost_indices

We MPI::sum() a 32 bit value of the total number of ghost indices, which
might overflow. This is unlikely to be a problem unless you exactly have
2^32 ghost indices, but this is nevertheless a bug.

4 years agoMerge pull request #8934 from bangerth/doc-4
Daniel Arndt [Mon, 21 Oct 2019 12:49:32 +0000 (08:49 -0400)]
Merge pull request #8934 from bangerth/doc-4

Augment the description of CellId::to_string().

4 years agoadd a barrier to avoid MPI race in ConsensusAlgorithm 8935/head
Timo Heister [Mon, 21 Oct 2019 11:19:43 +0000 (13:19 +0200)]
add a barrier to avoid MPI race in ConsensusAlgorithm

As discussed in #8929, messages exchanged in this function can be mixed
up if called twice in succesion. Add a Barrier to make sure this won't
happen.

4 years agoMerge pull request #8930 from peterrum/consensus-fix
Timo Heister [Mon, 21 Oct 2019 11:01:40 +0000 (13:01 +0200)]
Merge pull request #8930 from peterrum/consensus-fix

Fix ConsensusAlgorithm_NBX

4 years agoUpdated test outputs for failing tests 8899/head
Roland [Mon, 21 Oct 2019 08:37:33 +0000 (10:37 +0200)]
Updated test outputs for failing tests

4 years agoIndentation fix in changelog
Roland [Mon, 21 Oct 2019 07:26:06 +0000 (09:26 +0200)]
Indentation fix in changelog

4 years agoFix ConsensusAlgorithm_NBX 8930/head
Peter Munch [Fri, 18 Oct 2019 21:44:32 +0000 (23:44 +0200)]
Fix ConsensusAlgorithm_NBX

4 years agoMerge pull request #8931 from masterleinad/fix_hp_n_boundary_dofs
Wolfgang Bangerth [Mon, 21 Oct 2019 00:25:08 +0000 (18:25 -0600)]
Merge pull request #8931 from masterleinad/fix_hp_n_boundary_dofs

Fix hp/n_boundary_dofs_01

4 years agoAugment the description of CellId::to_string(). 8934/head
Wolfgang Bangerth [Mon, 21 Oct 2019 00:15:42 +0000 (18:15 -0600)]
Augment the description of CellId::to_string().

4 years agoMerge pull request #8932 from tjhei/fix_error_message
Martin Kronbichler [Sun, 20 Oct 2019 11:25:05 +0000 (13:25 +0200)]
Merge pull request #8932 from tjhei/fix_error_message

add missing space to error message

4 years agoadd missing space to error message 8932/head
Timo Heister [Sun, 20 Oct 2019 11:16:51 +0000 (13:16 +0200)]
add missing space to error message

4 years agoFix hp/n_boundary_dofs_01 8931/head
Daniel Arndt [Sun, 20 Oct 2019 04:20:33 +0000 (00:20 -0400)]
Fix hp/n_boundary_dofs_01

4 years agoMerge pull request #8891 from masterleinad/remove_bind_4
Wolfgang Bangerth [Sat, 19 Oct 2019 15:07:49 +0000 (09:07 -0600)]
Merge pull request #8891 from masterleinad/remove_bind_4

Remove std::bind from examples

4 years agoMerge pull request #8924 from nfehn/digits
Martin Kronbichler [Fri, 18 Oct 2019 20:26:35 +0000 (22:26 +0200)]
Merge pull request #8924 from nfehn/digits

Refactoring of Utilities::needed_digits()

4 years agoMerge pull request #8926 from masterleinad/replace_workstream_shared_ptr
Martin Kronbichler [Fri, 18 Oct 2019 20:18:56 +0000 (22:18 +0200)]
Merge pull request #8926 from masterleinad/replace_workstream_shared_ptr

Replace std::shared_ptr in WorkStream

4 years agoMerge pull request #8928 from bangerth/doc-3
Daniel Arndt [Fri, 18 Oct 2019 18:54:24 +0000 (14:54 -0400)]
Merge pull request #8928 from bangerth/doc-3

Be more explicit about the Copied argument to WorkStream::run().

4 years agoBe more explicit about the Copied argument to WorkStream::run(). 8928/head
Wolfgang Bangerth [Fri, 18 Oct 2019 16:51:11 +0000 (10:51 -0600)]
Be more explicit about the Copied argument to WorkStream::run().

4 years agoReplace std::shared_ptr in WorkStream 8926/head
Daniel Arndt [Fri, 18 Oct 2019 15:58:11 +0000 (11:58 -0400)]
Replace std::shared_ptr in WorkStream

4 years agoMerge pull request #8925 from masterleinad/document_empty_copier
Wolfgang Bangerth [Fri, 18 Oct 2019 16:46:45 +0000 (10:46 -0600)]
Merge pull request #8925 from masterleinad/document_empty_copier

Document usage of empty copiers in WorkStream

4 years agoUse empty function object for copier 8891/head
Daniel Arndt [Fri, 18 Oct 2019 14:54:18 +0000 (10:54 -0400)]
Use empty function object for copier

4 years agoDocument usage of empty copiers in WorkStream 8925/head
Daniel Arndt [Fri, 18 Oct 2019 15:08:17 +0000 (11:08 -0400)]
Document usage of empty copiers in WorkStream

4 years agoApply suggestions from code review
Daniel Arndt [Fri, 18 Oct 2019 14:53:26 +0000 (10:53 -0400)]
Apply suggestions from code review

Co-Authored-By: Wolfgang Bangerth <bangerth@colostate.edu>
4 years agoUpdate examples/step-13/step-13.cc
Daniel Arndt [Fri, 18 Oct 2019 14:48:33 +0000 (10:48 -0400)]
Update examples/step-13/step-13.cc

Co-Authored-By: Wolfgang Bangerth <bangerth@colostate.edu>
4 years agominor changes 8924/head
Niklas Fehn [Fri, 18 Oct 2019 14:31:59 +0000 (16:31 +0200)]
minor changes

4 years agoentry doc/news/changes/minor
Niklas Fehn [Fri, 18 Oct 2019 12:46:38 +0000 (14:46 +0200)]
entry doc/news/changes/minor

4 years agouse Utilities::needed_digits() in write_vtu_with_pvtu_record()
Niklas Fehn [Fri, 18 Oct 2019 12:44:50 +0000 (14:44 +0200)]
use Utilities::needed_digits() in write_vtu_with_pvtu_record()

4 years agorefactor function Utilities::needed_digits()
Niklas Fehn [Fri, 18 Oct 2019 12:30:24 +0000 (14:30 +0200)]
refactor function Utilities::needed_digits()

4 years agoMerge pull request #8909 from peterrum/matrixfree-face-iterator
Martin Kronbichler [Fri, 18 Oct 2019 12:29:24 +0000 (14:29 +0200)]
Merge pull request #8909 from peterrum/matrixfree-face-iterator

Add get_face_iterator to MatrixFree

4 years agoMerge pull request #8922 from bangerth/update
Martin Kronbichler [Fri, 18 Oct 2019 12:28:56 +0000 (14:28 +0200)]
Merge pull request #8922 from bangerth/update

Minor code and documentation updates.

4 years agoMerge pull request #8923 from bangerth/update-2
Martin Kronbichler [Fri, 18 Oct 2019 12:28:43 +0000 (14:28 +0200)]
Merge pull request #8923 from bangerth/update-2

More minor updates.

4 years agoMerge pull request #8904 from nfehn/master
Martin Kronbichler [Fri, 18 Oct 2019 12:28:22 +0000 (14:28 +0200)]
Merge pull request #8904 from nfehn/master

Simplify code for writing vtu/pvtu output files in application programs

4 years agonew function DataOutInterface::write_vtu_with_pvtu_record() to avoid reimplementing... 8904/head
Niklas Fehn [Mon, 14 Oct 2019 15:37:13 +0000 (17:37 +0200)]
new function DataOutInterface::write_vtu_with_pvtu_record() to avoid reimplementing the same code again and again

4 years agoAdded changelog
Roland [Fri, 18 Oct 2019 06:49:00 +0000 (08:49 +0200)]
Added changelog

4 years agoMerge pull request #8916 from nfehn/torus
Wolfgang Bangerth [Fri, 18 Oct 2019 06:26:50 +0000 (00:26 -0600)]
Merge pull request #8916 from nfehn/torus

Extend GridGenerator::torus<3,3>() so that one can generate a torus segment

4 years agoMerge pull request #8921 from bangerth/doc
Martin Kronbichler [Fri, 18 Oct 2019 06:08:44 +0000 (08:08 +0200)]
Merge pull request #8921 from bangerth/doc

Add an external reference.

4 years agoAdd get_face_iterator 8909/head
peterrum [Tue, 6 Aug 2019 16:00:46 +0000 (18:00 +0200)]
Add get_face_iterator

Conflicts:
include/deal.II/matrix_free/matrix_free.templates.h

4 years agoMore minor updates. 8923/head
Wolfgang Bangerth [Fri, 18 Oct 2019 05:49:27 +0000 (23:49 -0600)]
More minor updates.

4 years agoMinor code and documentation updates. 8922/head
Wolfgang Bangerth [Fri, 18 Oct 2019 05:39:59 +0000 (23:39 -0600)]
Minor code and documentation updates.

4 years agoAdd an external reference. 8921/head
Wolfgang Bangerth [Fri, 18 Oct 2019 05:24:40 +0000 (23:24 -0600)]
Add an external reference.

4 years agoMerge pull request #8910 from kronbichler/mf_unsupported_refinement_edges
Wolfgang Bangerth [Fri, 18 Oct 2019 05:08:47 +0000 (23:08 -0600)]
Merge pull request #8910 from kronbichler/mf_unsupported_refinement_edges

Document unsupported MG refinement edges for matrix-free DG

4 years agoMerge pull request #8919 from peterrum/matrixfree-get_level_mg_handler2
Wolfgang Bangerth [Fri, 18 Oct 2019 04:38:45 +0000 (22:38 -0600)]
Merge pull request #8919 from peterrum/matrixfree-get_level_mg_handler2

Replace level_mg_handler by mg_level

4 years agoReplace level_mg_handler by mg_level 8919/head
Peter Munch [Thu, 17 Oct 2019 10:47:24 +0000 (12:47 +0200)]
Replace level_mg_handler by mg_level

4 years agosome renaming to make code more readable 8916/head
Niklas Fehn [Thu, 17 Oct 2019 14:57:09 +0000 (16:57 +0200)]
some renaming to make code more readable

4 years agoMerge pull request #8917 from bangerth/doc
David Wells [Thu, 17 Oct 2019 14:18:00 +0000 (10:18 -0400)]
Merge pull request #8917 from bangerth/doc

Use positive form for comments.

4 years agoUse positive form for comments. 8917/head
Wolfgang Bangerth [Wed, 16 Oct 2019 19:47:44 +0000 (13:47 -0600)]
Use positive form for comments.

4 years agoMerge pull request #8915 from peterrum/matrixfree-get_level_mg_handler
Martin Kronbichler [Wed, 16 Oct 2019 17:44:02 +0000 (19:44 +0200)]
Merge pull request #8915 from peterrum/matrixfree-get_level_mg_handler

Save level_mg_handler inside of MatrixFree

4 years agoadd new test case
Niklas Fehn [Wed, 16 Oct 2019 16:16:38 +0000 (18:16 +0200)]
add new test case

4 years agoextend GridGenerator::torus<3,3>() so that one can generate an open torus with angle...
Niklas Fehn [Wed, 16 Oct 2019 16:15:24 +0000 (18:15 +0200)]
extend GridGenerator::torus<3,3>() so that one can generate an open torus with angle 0 < phi <= 2*pi

4 years agoSave level_mg_handler inside of MatrixFree 8915/head
Peter Munch [Sat, 29 Dec 2018 06:44:41 +0000 (07:44 +0100)]
Save level_mg_handler inside of MatrixFree

4 years agoMerge pull request #8913 from nfehn/torus
Martin Kronbichler [Wed, 16 Oct 2019 15:17:38 +0000 (17:17 +0200)]
Merge pull request #8913 from nfehn/torus

fix bug in GridGenerator::torus<3,3>()


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