]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
4 years agoAdd more choices to QuadratureSelector 9039/head
Daniel Jodlbauer [Mon, 11 Nov 2019 14:11:58 +0000 (15:11 +0100)]
Add more choices to QuadratureSelector

4 years agoMerge pull request #9033 from peterrum/compute_point_to_point_communication_pattern_nbx
Timo Heister [Mon, 11 Nov 2019 13:08:30 +0000 (08:08 -0500)]
Merge pull request #9033 from peterrum/compute_point_to_point_communication_pattern_nbx

Use ConsensusAlgorithm_NBX in compute_point_to_point_communication_pattern

4 years agoMerge pull request #9035 from peterrum/consensus_algo_comment
Daniel Arndt [Mon, 11 Nov 2019 00:44:13 +0000 (19:44 -0500)]
Merge pull request #9035 from peterrum/consensus_algo_comment

Add missing doxygen comment in ConsensusAlgorithm

4 years agoMerge pull request #9024 from tjhei/index_set_64
Daniel Arndt [Mon, 11 Nov 2019 00:40:10 +0000 (19:40 -0500)]
Merge pull request #9024 from tjhei/index_set_64

64bit fixes for IndexSets

4 years agoAdd missing doxygen comment in ConsensusAlgorithm 9035/head
Peter Munch [Sun, 10 Nov 2019 18:42:51 +0000 (19:42 +0100)]
Add missing doxygen comment in ConsensusAlgorithm

4 years agoRewrite compute_point_to_point_communication_pattern so that it uses ConsensusAlgorit... 9033/head
Peter Munch [Sun, 10 Nov 2019 17:24:29 +0000 (18:24 +0100)]
Rewrite compute_point_to_point_communication_pattern so that it uses ConsensusAlgorithm_NBX for MPI 3.0

4 years agoMerge pull request #9022 from Rombur/warpsize
Daniel Arndt [Sun, 10 Nov 2019 12:50:12 +0000 (07:50 -0500)]
Merge pull request #9022 from Rombur/warpsize

Do not hardcode the warp size

4 years agoMerge pull request #9030 from tamiko/fix_tpetra_check
Matthias Maier [Sat, 9 Nov 2019 18:21:27 +0000 (12:21 -0600)]
Merge pull request #9030 from tamiko/fix_tpetra_check

configure trilinos: Ensure that we are linking against MPI for Tpetra configure check

4 years agoconfigure trilinos: Ensure that we are linking against MPI for Tpetra configure check 9030/head
Matthias Maier [Sat, 9 Nov 2019 07:43:13 +0000 (01:43 -0600)]
configure trilinos: Ensure that we are linking against MPI for Tpetra configure check

4 years agoMerge pull request #9026 from masterleinad/revert_8976
Matthias Maier [Sat, 9 Nov 2019 02:19:15 +0000 (20:19 -0600)]
Merge pull request #9026 from masterleinad/revert_8976

Revert "added stl read/write functions"

4 years agoMerge pull request #9027 from peterrum/dofhandler_docu_fix
Daniel Arndt [Fri, 8 Nov 2019 20:35:28 +0000 (15:35 -0500)]
Merge pull request #9027 from peterrum/dofhandler_docu_fix

Add missing bracket in docu of DoFHandler

4 years agoAdd missing bracket in docu of DoFHandler 9027/head
Peter Munch [Fri, 8 Nov 2019 20:15:30 +0000 (21:15 +0100)]
Add missing bracket in docu of DoFHandler

4 years agoRevert "added stl read/write functions" 9026/head
Daniel Arndt [Fri, 8 Nov 2019 19:35:36 +0000 (14:35 -0500)]
Revert "added stl read/write functions"

This reverts commit 30df5d2033e8fa9a3eb0b0e01da04d34c090b270.

4 years agoaddress comment 9024/head
Timo Heister [Fri, 8 Nov 2019 19:27:04 +0000 (14:27 -0500)]
address comment

4 years agofix comment
Timo Heister [Fri, 8 Nov 2019 18:28:58 +0000 (13:28 -0500)]
fix comment

4 years agofix output
Timo Heister [Fri, 8 Nov 2019 17:59:10 +0000 (12:59 -0500)]
fix output

4 years agofix index types
Timo Heister [Fri, 8 Nov 2019 16:16:07 +0000 (11:16 -0500)]
fix index types

4 years agoadd test
Timo Heister [Fri, 8 Nov 2019 15:26:50 +0000 (10:26 -0500)]
add test

4 years agofix complete_index_set
Timo Heister [Fri, 8 Nov 2019 15:38:06 +0000 (10:38 -0500)]
fix complete_index_set

4 years agoDo not hardcode the warp size 9022/head
Bruno Turcksin [Fri, 8 Nov 2019 13:34:29 +0000 (08:34 -0500)]
Do not hardcode the warp size

4 years agoMerge pull request #9020 from masterleinad/missing_header
David Wells [Fri, 8 Nov 2019 03:48:49 +0000 (22:48 -0500)]
Merge pull request #9020 from masterleinad/missing_header

Add missing header

4 years agoAdd missing header 9020/head
Daniel Arndt [Thu, 7 Nov 2019 23:05:58 +0000 (18:05 -0500)]
Add missing header

4 years agoMerge pull request #9013 from masterleinad/fix_hp_cell_weights_tests
Wolfgang Bangerth [Thu, 7 Nov 2019 16:47:59 +0000 (09:47 -0700)]
Merge pull request #9013 from masterleinad/fix_hp_cell_weights_tests

Fix hp_cell_weights tests

4 years agoMerge pull request #9016 from Rombur/step_54
Wolfgang Bangerth [Thu, 7 Nov 2019 16:41:41 +0000 (09:41 -0700)]
Merge pull request #9016 from Rombur/step_54

Add missing namespace

4 years agoMerge pull request #9017 from bangerth/20
David Wells [Thu, 7 Nov 2019 16:25:57 +0000 (11:25 -0500)]
Merge pull request #9017 from bangerth/20

Minor updates to the documentation of step-20.

4 years agoMinor updates to the documentation of step-20. 9017/head
Wolfgang Bangerth [Thu, 7 Nov 2019 15:59:14 +0000 (08:59 -0700)]
Minor updates to the documentation of step-20.

4 years agoMerge pull request #9012 from masterleinad/fix_fullydistributed_grids_copy_serial_test
Timo Heister [Thu, 7 Nov 2019 14:34:55 +0000 (09:34 -0500)]
Merge pull request #9012 from masterleinad/fix_fullydistributed_grids_copy_serial_test

Fix test output for fullydistributed_grids/copy_serial_tria

4 years agoAdd missing namespace 9016/head
Bruno Turcksin [Thu, 7 Nov 2019 13:20:42 +0000 (13:20 +0000)]
Add missing namespace

4 years agoMerge pull request #8419 from dangars/phase_shift_periodic_constraints
Daniel Arndt [Thu, 7 Nov 2019 13:17:35 +0000 (08:17 -0500)]
Merge pull request #8419 from dangars/phase_shift_periodic_constraints

Bloch periodic conditions (a.k.a. phase shift periodic conditions)

4 years agoMerge pull request #9014 from rezarastak/dof_tools_doc_fix
Daniel Arndt [Thu, 7 Nov 2019 05:03:19 +0000 (00:03 -0500)]
Merge pull request #9014 from rezarastak/dof_tools_doc_fix

small documentation fix in DoFTools

4 years agosmall doc typo fix in DoFTools 9014/head
Reza Rastak [Thu, 7 Nov 2019 04:37:47 +0000 (20:37 -0800)]
small doc typo fix in DoFTools

4 years agoFix hp_cell_weights tests 9013/head
Daniel Arndt [Thu, 7 Nov 2019 03:40:54 +0000 (22:40 -0500)]
Fix hp_cell_weights tests

4 years agoFix test output for fullydistributed_grids/copy_serial_tria 9012/head
Daniel Arndt [Thu, 7 Nov 2019 02:38:45 +0000 (21:38 -0500)]
Fix test output for fullydistributed_grids/copy_serial_tria

4 years agoMerge pull request #9005 from jodlbauer/master
Daniel Arndt [Thu, 7 Nov 2019 02:32:56 +0000 (21:32 -0500)]
Merge pull request #9005 from jodlbauer/master

Allow change of SIMD type via template argument

4 years agoMerge pull request #9002 from tjhei/comm_by_const_ref
Daniel Arndt [Thu, 7 Nov 2019 02:23:35 +0000 (21:23 -0500)]
Merge pull request #9002 from tjhei/comm_by_const_ref

return MPI_Comm by const ref

4 years agoMerge pull request #8976 from nicola-giuliani/stl_handling
Daniel Arndt [Thu, 7 Nov 2019 02:22:35 +0000 (21:22 -0500)]
Merge pull request #8976 from nicola-giuliani/stl_handling

added stl read/write functions

4 years agoFix Boost.Python CMake (#9011)
Bruno Turcksin [Wed, 6 Nov 2019 21:32:18 +0000 (16:32 -0500)]
Fix Boost.Python CMake (#9011)

Fix Boost.Python CMake

4 years agoUnset Boost_FOUND to get Boost.Python properly configured 9011/head
Alexander Grayver [Wed, 6 Nov 2019 21:10:19 +0000 (22:10 +0100)]
Unset Boost_FOUND to get Boost.Python properly configured

4 years agoMerge pull request #8994 from kronbichler/simplify_index_owner_internal
Timo Heister [Wed, 6 Nov 2019 15:56:19 +0000 (10:56 -0500)]
Merge pull request #8994 from kronbichler/simplify_index_owner_internal

Slightly simplify MPI::ComputeIndexOwner::Dictionary range detection

4 years agoMerge pull request #9008 from peterrum/indent-message-hint
Timo Heister [Wed, 6 Nov 2019 15:22:06 +0000 (10:22 -0500)]
Merge pull request #9008 from peterrum/indent-message-hint

Add a hint to the indention script

4 years agoAdd a hint to the indention script 9008/head
Peter Munch [Wed, 6 Nov 2019 06:28:45 +0000 (07:28 +0100)]
Add a hint to the indention script

4 years agoadded stl read/write functions 8976/head
Nicola Giuliani [Wed, 30 Oct 2019 13:06:33 +0000 (14:06 +0100)]
added stl read/write functions

post comments from wolfgang

added changes

4 years agoMerge pull request #8962 from peterrum/gridout-vtk-optional-all
Daniel Arndt [Wed, 6 Nov 2019 05:43:30 +0000 (00:43 -0500)]
Merge pull request #8962 from peterrum/gridout-vtk-optional-all

Output all faces and edges to vtk

4 years agoAdd SIMD type to template list of MF-Operators 9005/head
Daniel Jodlbauer [Tue, 5 Nov 2019 16:40:23 +0000 (17:40 +0100)]
Add SIMD type to template list of MF-Operators

4 years agoMerge pull request #9003 from tjhei/index_set_add_indices_64
Daniel Arndt [Tue, 5 Nov 2019 15:46:09 +0000 (10:46 -0500)]
Merge pull request #9003 from tjhei/index_set_add_indices_64

fix 64bit IndexSet::add_indices

4 years agochangelog 9003/head
Timo Heister [Tue, 5 Nov 2019 14:13:09 +0000 (09:13 -0500)]
changelog

4 years agoOutput all faces and edges to vtk 8962/head
Peter Munch [Fri, 25 Oct 2019 16:15:09 +0000 (18:15 +0200)]
Output all faces and edges to vtk

4 years agoMerge pull request #9001 from tjhei/use_collective_mutex2
Daniel Arndt [Tue, 5 Nov 2019 04:59:52 +0000 (23:59 -0500)]
Merge pull request #9001 from tjhei/use_collective_mutex2

protect more MPI communication with a CollectiveMutex

4 years agofix 64bit IndexSet::add_indices
Timo Heister [Tue, 5 Nov 2019 03:03:03 +0000 (22:03 -0500)]
fix 64bit IndexSet::add_indices

the offset parameter needs to be 64 bit to allow shifting an IndexSet in
a large computation.

part of and hopefully a fix for #8937

4 years agoreturn MPI_Comm by const ref 9002/head
Timo Heister [Tue, 5 Nov 2019 01:38:50 +0000 (20:38 -0500)]
return MPI_Comm by const ref

Fix a few places where we return the MPI_Comm by value. This is
problematic if we pass it to a function taking a reference and storing
it:

    CollectiveMutex::ScopedLock lock(mutex, tria.get_communicator());

4 years agodo not take a reference to the communicator 9001/head
Timo Heister [Tue, 5 Nov 2019 01:26:12 +0000 (20:26 -0500)]
do not take a reference to the communicator

4 years agoprotect more MPI communication with a CollectiveMutex
Timo Heister [Mon, 4 Nov 2019 19:23:56 +0000 (14:23 -0500)]
protect more MPI communication with a CollectiveMutex

- also replace a MPI_Probe with MPI_ANY_TAG

4 years agoMerge pull request #8997 from tjhei/use_collective_mutex
Daniel Arndt [Mon, 4 Nov 2019 21:11:42 +0000 (16:11 -0500)]
Merge pull request #8997 from tjhei/use_collective_mutex

use MPI::CollectiveMutex in several places

4 years agoMerge pull request #8998 from rumajo/fix_gmsh_compilation
Daniel Arndt [Mon, 4 Nov 2019 21:11:15 +0000 (16:11 -0500)]
Merge pull request #8998 from rumajo/fix_gmsh_compilation

Fix compilation of gmsh support

4 years agomove mutex down 8997/head
Timo Heister [Mon, 4 Nov 2019 15:53:11 +0000 (10:53 -0500)]
move mutex down

4 years agouse MPI::CollectiveMutex in several places
Timo Heister [Fri, 1 Nov 2019 18:53:11 +0000 (14:53 -0400)]
use MPI::CollectiveMutex in several places

4 years agoMerge pull request #8933 from tjhei/wait_all_consensus
Wolfgang Bangerth [Mon, 4 Nov 2019 18:13:28 +0000 (11:13 -0700)]
Merge pull request #8933 from tjhei/wait_all_consensus

Avoid empty MPI_Waitall in consensus algorithm

4 years agoMerge pull request #8996 from masterleinad/use_face_iterators_tutorial
Wolfgang Bangerth [Mon, 4 Nov 2019 18:06:23 +0000 (11:06 -0700)]
Merge pull request #8996 from masterleinad/use_face_iterators_tutorial

Use face_iterators in tutorials

4 years agoMerge pull request #8964 from tjhei/mpi_wait_finalizer
Wolfgang Bangerth [Mon, 4 Nov 2019 18:01:20 +0000 (11:01 -0700)]
Merge pull request #8964 from tjhei/mpi_wait_finalizer

implement MPI::CollectiveMutex

4 years agoFix compilation of gmsh support 8998/head
Matthew Russell [Mon, 4 Nov 2019 16:19:15 +0000 (16:19 +0000)]
Fix compilation of gmsh support

Use std::ofstream rather than just ofstream.

4 years agoImprove style 8996/head
Daniel Arndt [Mon, 4 Nov 2019 15:30:31 +0000 (10:30 -0500)]
Improve style

4 years agoMPI_InitFinalize request tracking and MPI::CollectiveMutex 8964/head
Timo Heister [Sat, 26 Oct 2019 09:02:52 +0000 (11:02 +0200)]
MPI_InitFinalize request tracking and MPI::CollectiveMutex

- implement mechanism to keep track of open MPI_Request
- implement CollectiveMutex
- add tests

4 years agoUse face_iterators in tutorials
Daniel Arndt [Mon, 4 Nov 2019 14:29:00 +0000 (09:29 -0500)]
Use face_iterators in tutorials

4 years agoImplement face_iterators for DoFCellAccessors
Daniel Arndt [Mon, 4 Nov 2019 14:27:32 +0000 (09:27 -0500)]
Implement face_iterators for DoFCellAccessors

4 years agoMerge pull request #8981 from peterrum/matrixfree_readcelldata
Martin Kronbichler [Mon, 4 Nov 2019 13:33:07 +0000 (14:33 +0100)]
Merge pull request #8981 from peterrum/matrixfree_readcelldata

Add new read_cell_data to FEEvaluationBase for arbitrary data types

4 years agoMerge pull request #8983 from peterrum/matrixfree-pbc-hn-fix
Martin Kronbichler [Mon, 4 Nov 2019 13:32:51 +0000 (14:32 +0100)]
Merge pull request #8983 from peterrum/matrixfree-pbc-hn-fix

Fix Matrixfree for periodic faces and hanging nodes

4 years agoSlightly simplify MPI::ComputeIndexOwner::Dictionary range detection 8994/head
Martin Kronbichler [Mon, 4 Nov 2019 13:30:17 +0000 (14:30 +0100)]
Slightly simplify MPI::ComputeIndexOwner::Dictionary range detection

4 years agoMerge pull request #8982 from peterrum/pft-pbcfix
David Wells [Mon, 4 Nov 2019 00:49:45 +0000 (19:49 -0500)]
Merge pull request #8982 from peterrum/pft-pbcfix

Fix create_construction_data_from_triangulation for periodic boundaries

4 years agoMerge pull request #8979 from agrayver/fix_copy_tria
Wolfgang Bangerth [Sun, 3 Nov 2019 22:43:25 +0000 (15:43 -0700)]
Merge pull request #8979 from agrayver/fix_copy_tria

Do not transfer the MPI communicator when copying the triangulation

4 years agoFix Matrixfree for periodic faces and hanging nodes 8983/head
Peter Munch [Thu, 31 Oct 2019 21:55:33 +0000 (22:55 +0100)]
Fix Matrixfree for periodic faces and hanging nodes

4 years agoFix create_construction_data_from_triangulation for periodic boundaries 8982/head
Peter Munch [Tue, 29 Oct 2019 13:11:34 +0000 (14:11 +0100)]
Fix create_construction_data_from_triangulation for periodic boundaries

4 years agoMerge pull request #8989 from winnifried/master
David Wells [Sun, 3 Nov 2019 18:45:03 +0000 (13:45 -0500)]
Merge pull request #8989 from winnifried/master

Added changes entry for pull request #8973

4 years agoDo not transfer the MPI communicator when copying the triangulation 8979/head
Alexander Grayver [Thu, 31 Oct 2019 14:53:46 +0000 (15:53 +0100)]
Do not transfer the MPI communicator when copying the triangulation

4 years agoMerge pull request #8992 from tjhei/fix_agrayver_mailmap
Daniel Arndt [Sat, 2 Nov 2019 21:58:13 +0000 (17:58 -0400)]
Merge pull request #8992 from tjhei/fix_agrayver_mailmap

fix agrayver username

4 years agofix agrayver username 8992/head
Timo Heister [Sat, 2 Nov 2019 21:47:34 +0000 (17:47 -0400)]
fix agrayver username

fixes #8990

4 years agochanged notation as suggested by David Wells 8989/head
Winnifried Wollner [Sat, 2 Nov 2019 20:29:33 +0000 (21:29 +0100)]
changed notation as suggested by David Wells

4 years agoMerge pull request #8984 from bangerth/61
David Wells [Sat, 2 Nov 2019 19:05:43 +0000 (15:05 -0400)]
Merge pull request #8984 from bangerth/61

Update the discussion about broken RT space in step-61.

4 years agoFix typo 8419/head
Daniel Garcia-Sanchez [Sat, 2 Nov 2019 18:36:12 +0000 (19:36 +0100)]
Fix typo

4 years agoMerge pull request #8987 from bangerth/simplify
David Wells [Sat, 2 Nov 2019 18:26:00 +0000 (14:26 -0400)]
Merge pull request #8987 from bangerth/simplify

Use identity<...>::type in the right place.

4 years agoMerge pull request #8986 from tjhei/intel_system_include_fix
David Wells [Sat, 2 Nov 2019 18:24:29 +0000 (14:24 -0400)]
Merge pull request #8986 from tjhei/intel_system_include_fix

disable intel system includes

4 years agoMerge pull request #8988 from bangerth/space
Timo Heister [Sat, 2 Nov 2019 14:21:15 +0000 (10:21 -0400)]
Merge pull request #8988 from bangerth/space

Be consistent with spaces.

4 years agoAdded changes entry for pull request #8973
Winnifried Wollner [Sat, 2 Nov 2019 08:17:55 +0000 (09:17 +0100)]
Added changes entry for pull request #8973

4 years agoBe consistent with spaces. 8988/head
Wolfgang Bangerth [Sat, 2 Nov 2019 03:35:13 +0000 (21:35 -0600)]
Be consistent with spaces.

4 years agoMerge pull request #8985 from dougshidong/fix_derivativeform_template
Wolfgang Bangerth [Sat, 2 Nov 2019 02:26:25 +0000 (20:26 -0600)]
Merge pull request #8985 from dougshidong/fix_derivativeform_template

Fix templating of some DerivativeForm functions.

4 years agoUse identity<...>::type in the right place. 8987/head
Wolfgang Bangerth [Fri, 1 Nov 2019 15:50:54 +0000 (09:50 -0600)]
Use identity<...>::type in the right place.

4 years agoAdd changelog entry
Daniel Garcia-Sanchez [Fri, 1 Nov 2019 18:03:59 +0000 (19:03 +0100)]
Add changelog entry

4 years agoMerge pull request #8968 from agrayver/fix_python_cmake
Daniel Arndt [Fri, 1 Nov 2019 17:55:53 +0000 (13:55 -0400)]
Merge pull request #8968 from agrayver/fix_python_cmake

Fix python bindings configuration for new boost

4 years agoMake python a required package and remove old lines 8968/head
Alexander Grayver [Fri, 1 Nov 2019 15:44:15 +0000 (16:44 +0100)]
Make python a required package and remove old lines

4 years agoMerge pull request #8712 from marcfehling/hp-refinement
Wolfgang Bangerth [Fri, 1 Nov 2019 15:27:09 +0000 (09:27 -0600)]
Merge pull request #8712 from marcfehling/hp-refinement

Major redesign of hp::Refinement.

4 years agoWrite complex periodicity_factor test
Daniel Garcia-Sanchez [Fri, 1 Nov 2019 13:59:41 +0000 (14:59 +0100)]
Write complex periodicity_factor test

4 years agodisable intel system includes 8986/head
Timo Heister [Sun, 20 Oct 2019 15:24:50 +0000 (17:24 +0200)]
disable intel system includes

fixes #8374

4 years agoStep-50 cleanup (#8948)
Bruno Turcksin [Fri, 1 Nov 2019 12:00:15 +0000 (08:00 -0400)]
Step-50 cleanup (#8948)

Step-50 cleanup

4 years agoMerge pull request #8973 from winnifried/master
Daniel Arndt [Fri, 1 Nov 2019 04:10:21 +0000 (00:10 -0400)]
Merge pull request #8973 from winnifried/master

Fix for fe-degree in VectorTools::project_boundary_values_curl_conforming_l2

4 years agoUpdate the discussion about broken RT space in step-61. 8984/head
Wolfgang Bangerth [Fri, 1 Nov 2019 00:38:48 +0000 (18:38 -0600)]
Update the discussion about broken RT space in step-61.

4 years agoFix templating of some DerivativeForm functions. 8985/head
Doug Shi-Dong [Fri, 1 Nov 2019 02:27:59 +0000 (22:27 -0400)]
Fix templating of some DerivativeForm functions.

The previous implementation would automatically try to convert into double.

4 years agoremove dead code 8948/head
Timo Heister [Fri, 1 Nov 2019 02:34:54 +0000 (22:34 -0400)]
remove dead code

4 years agoMerge pull request #8971 from peterrum/matrixfree-get_level_mg_handler4
Bruno Turcksin [Fri, 1 Nov 2019 00:20:56 +0000 (20:20 -0400)]
Merge pull request #8971 from peterrum/matrixfree-get_level_mg_handler4

Add copy assignment to MatrixFree::AdditionalData

4 years agoAdd Bloch periodic conditions
Daniel Garcia-Sanchez [Thu, 31 Oct 2019 20:39:00 +0000 (21:39 +0100)]
Add Bloch periodic conditions

4 years agoMerge pull request #8980 from GrahamBenHarper/graham_dev_typofix
Wolfgang Bangerth [Thu, 31 Oct 2019 18:32:48 +0000 (12:32 -0600)]
Merge pull request #8980 from GrahamBenHarper/graham_dev_typofix

Fix a step-61 typo

4 years agoAdd copy addignment to MatrixFree::AdditionalData 8971/head
Peter Munch [Mon, 28 Oct 2019 14:01:32 +0000 (15:01 +0100)]
Add copy addignment to MatrixFree::AdditionalData


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