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https://gitweb.dealii.org/ - dealii.git/log
Matthias Maier [Thu, 14 Nov 2019 04:38:54 +0000 (22:38 -0600)]
fix compilation with opencascade version 6.8.0 and older
Matthias Maier [Thu, 14 Nov 2019 01:12:41 +0000 (19:12 -0600)]
Merge pull request #9040 from nicola-giuliani/stl_fixup
added stl read/write functions with compatibility
Martin Kronbichler [Wed, 13 Nov 2019 13:15:54 +0000 (14:15 +0100)]
Merge pull request #9010 from tjhei/central_mpi_tags
use global list of MPI tags for collective communication
Nicola Giuliani [Wed, 13 Nov 2019 09:24:58 +0000 (10:24 +0100)]
updated change file
Nicola Giuliani [Wed, 13 Nov 2019 09:20:40 +0000 (10:20 +0100)]
added another ifdef to check the versions of OCC
David Wells [Tue, 12 Nov 2019 18:09:44 +0000 (13:09 -0500)]
Merge pull request #9044 from peterrum/fix_log
Fix data of log files
Martin Kronbichler [Tue, 12 Nov 2019 17:34:53 +0000 (18:34 +0100)]
Merge pull request #9018 from bangerth/22
Add a discussion about Schur complements to step-22.
Daniel Arndt [Tue, 12 Nov 2019 16:13:08 +0000 (11:13 -0500)]
Merge pull request #9042 from masterleinad/fix_timer_07
Fix timer_07 test
Peter Munch [Tue, 12 Nov 2019 15:45:55 +0000 (16:45 +0100)]
Fix data of log files
Daniel Arndt [Tue, 12 Nov 2019 14:09:47 +0000 (09:09 -0500)]
Fix timer_07 test
Daniel Arndt [Tue, 12 Nov 2019 13:57:18 +0000 (08:57 -0500)]
Merge pull request #8797 from kronbichler/speedup_multigrid_init
Allow multigrid transfer to use external vector partitioners
Daniel Arndt [Tue, 12 Nov 2019 13:39:15 +0000 (08:39 -0500)]
Merge pull request #9041 from kronbichler/remove_unused_variable
Avoid warning about unused variable
Martin Kronbichler [Thu, 19 Sep 2019 07:21:25 +0000 (09:21 +0200)]
Changelog
Martin Kronbichler [Wed, 18 Sep 2019 20:46:02 +0000 (22:46 +0200)]
Test case
Martin Kronbichler [Wed, 18 Sep 2019 20:45:46 +0000 (22:45 +0200)]
Allow multigrid transfer to use external vector partitioners
Martin Kronbichler [Tue, 12 Nov 2019 09:41:31 +0000 (10:41 +0100)]
Avoid warning about unused variable
Nicola Giuliani [Tue, 12 Nov 2019 09:24:32 +0000 (10:24 +0100)]
improved check for OCC versions and test routines
Martin Kronbichler [Tue, 12 Nov 2019 08:17:19 +0000 (09:17 +0100)]
Merge pull request #9038 from Rombur/cuda_volatile
Make variable volatile to avoid incorrect optimization
Bruno Turcksin [Mon, 11 Nov 2019 14:10:07 +0000 (14:10 +0000)]
Make variable volatile to avoid incorrect optimization
See https://devtalk.nvidia.com/default/topic/965588/race-condition-within-warp/
Wolfgang Bangerth [Mon, 11 Nov 2019 21:05:52 +0000 (14:05 -0700)]
Merge pull request #9039 from jodlbauer/quadratures
Add more choices to QuadratureSelector
David Wells [Mon, 11 Nov 2019 17:19:55 +0000 (12:19 -0500)]
Merge pull request #9025 from tjhei/timer_output_spam
remove TimerOutput error spam
Nicola Giuliani [Mon, 11 Nov 2019 17:11:36 +0000 (18:11 +0100)]
break
Nicola Giuliani [Wed, 30 Oct 2019 13:06:33 +0000 (14:06 +0100)]
added stl read/write functions
post comments from wolfgang
added changes
added IncrementalMesh
Daniel Jodlbauer [Mon, 11 Nov 2019 14:11:58 +0000 (15:11 +0100)]
Add more choices to QuadratureSelector
Timo Heister [Mon, 11 Nov 2019 13:08:30 +0000 (08:08 -0500)]
Merge pull request #9033 from peterrum/compute_point_to_point_communication_pattern_nbx
Use ConsensusAlgorithm_NBX in compute_point_to_point_communication_pattern
Daniel Arndt [Mon, 11 Nov 2019 00:44:13 +0000 (19:44 -0500)]
Merge pull request #9035 from peterrum/consensus_algo_comment
Add missing doxygen comment in ConsensusAlgorithm
Daniel Arndt [Mon, 11 Nov 2019 00:40:10 +0000 (19:40 -0500)]
Merge pull request #9024 from tjhei/index_set_64
64bit fixes for IndexSets
Peter Munch [Sun, 10 Nov 2019 18:42:51 +0000 (19:42 +0100)]
Add missing doxygen comment in ConsensusAlgorithm
Peter Munch [Sun, 10 Nov 2019 17:24:29 +0000 (18:24 +0100)]
Rewrite compute_point_to_point_communication_pattern so that it uses ConsensusAlgorithm_NBX for MPI 3.0
Daniel Arndt [Sun, 10 Nov 2019 12:50:12 +0000 (07:50 -0500)]
Merge pull request #9022 from Rombur/warpsize
Do not hardcode the warp size
Matthias Maier [Sat, 9 Nov 2019 18:21:27 +0000 (12:21 -0600)]
Merge pull request #9030 from tamiko/fix_tpetra_check
configure trilinos: Ensure that we are linking against MPI for Tpetra configure check
Matthias Maier [Sat, 9 Nov 2019 07:43:13 +0000 (01:43 -0600)]
configure trilinos: Ensure that we are linking against MPI for Tpetra configure check
Matthias Maier [Sat, 9 Nov 2019 02:19:15 +0000 (20:19 -0600)]
Merge pull request #9026 from masterleinad/revert_8976
Revert "added stl read/write functions"
Daniel Arndt [Fri, 8 Nov 2019 20:35:28 +0000 (15:35 -0500)]
Merge pull request #9027 from peterrum/dofhandler_docu_fix
Add missing bracket in docu of DoFHandler
Peter Munch [Fri, 8 Nov 2019 20:15:30 +0000 (21:15 +0100)]
Add missing bracket in docu of DoFHandler
Daniel Arndt [Fri, 8 Nov 2019 19:35:36 +0000 (14:35 -0500)]
Revert "added stl read/write functions"
This reverts commit
30df5d2033e8fa9a3eb0b0e01da04d34c090b270 .
Timo Heister [Fri, 8 Nov 2019 19:27:04 +0000 (14:27 -0500)]
address comment
Timo Heister [Fri, 8 Nov 2019 19:25:49 +0000 (14:25 -0500)]
remove TimerOutput error spam
TimerOutput produces output on each MPI rank when an exception is
thrown. This makes looking at output with 100k MPI ranks somewhat
annoying. Fix this by only outputting on rank 0.
This assumes that also rank 0 triggers this exception, which might not
be true. In that case, we would likely deadlock anyways...
Timo Heister [Fri, 8 Nov 2019 18:28:58 +0000 (13:28 -0500)]
fix comment
Timo Heister [Fri, 8 Nov 2019 17:59:10 +0000 (12:59 -0500)]
fix output
Timo Heister [Fri, 8 Nov 2019 16:16:07 +0000 (11:16 -0500)]
fix index types
Timo Heister [Fri, 8 Nov 2019 15:26:50 +0000 (10:26 -0500)]
add test
Timo Heister [Fri, 8 Nov 2019 15:38:06 +0000 (10:38 -0500)]
fix complete_index_set
Bruno Turcksin [Fri, 8 Nov 2019 13:34:29 +0000 (08:34 -0500)]
Do not hardcode the warp size
David Wells [Fri, 8 Nov 2019 03:48:49 +0000 (22:48 -0500)]
Merge pull request #9020 from masterleinad/missing_header
Add missing header
Daniel Arndt [Thu, 7 Nov 2019 23:05:58 +0000 (18:05 -0500)]
Add missing header
Timo Heister [Thu, 7 Nov 2019 16:48:21 +0000 (11:48 -0500)]
fix bug
Wolfgang Bangerth [Thu, 7 Nov 2019 16:47:59 +0000 (09:47 -0700)]
Merge pull request #9013 from masterleinad/fix_hp_cell_weights_tests
Fix hp_cell_weights tests
Wolfgang Bangerth [Thu, 7 Nov 2019 16:41:41 +0000 (09:41 -0700)]
Merge pull request #9016 from Rombur/step_54
Add missing namespace
Wolfgang Bangerth [Thu, 7 Nov 2019 16:34:03 +0000 (09:34 -0700)]
Add a discussion about Schur complements to step-22.
David Wells [Thu, 7 Nov 2019 16:25:57 +0000 (11:25 -0500)]
Merge pull request #9017 from bangerth/20
Minor updates to the documentation of step-20.
Timo Heister [Thu, 7 Nov 2019 16:23:35 +0000 (11:23 -0500)]
fix compilation
Wolfgang Bangerth [Thu, 7 Nov 2019 15:59:14 +0000 (08:59 -0700)]
Minor updates to the documentation of step-20.
Timo Heister [Thu, 7 Nov 2019 14:34:55 +0000 (09:34 -0500)]
Merge pull request #9012 from masterleinad/fix_fullydistributed_grids_copy_serial_test
Fix test output for fullydistributed_grids/copy_serial_tria
Bruno Turcksin [Thu, 7 Nov 2019 13:20:42 +0000 (13:20 +0000)]
Add missing namespace
Daniel Arndt [Thu, 7 Nov 2019 13:17:35 +0000 (08:17 -0500)]
Merge pull request #8419 from dangars/phase_shift_periodic_constraints
Bloch periodic conditions (a.k.a. phase shift periodic conditions)
Daniel Arndt [Thu, 7 Nov 2019 05:03:19 +0000 (00:03 -0500)]
Merge pull request #9014 from rezarastak/dof_tools_doc_fix
small documentation fix in DoFTools
Reza Rastak [Thu, 7 Nov 2019 04:37:47 +0000 (20:37 -0800)]
small doc typo fix in DoFTools
Daniel Arndt [Thu, 7 Nov 2019 03:40:54 +0000 (22:40 -0500)]
Fix hp_cell_weights tests
Daniel Arndt [Thu, 7 Nov 2019 02:38:45 +0000 (21:38 -0500)]
Fix test output for fullydistributed_grids/copy_serial_tria
Daniel Arndt [Thu, 7 Nov 2019 02:32:56 +0000 (21:32 -0500)]
Merge pull request #9005 from jodlbauer/master
Allow change of SIMD type via template argument
Daniel Arndt [Thu, 7 Nov 2019 02:23:35 +0000 (21:23 -0500)]
Merge pull request #9002 from tjhei/comm_by_const_ref
return MPI_Comm by const ref
Daniel Arndt [Thu, 7 Nov 2019 02:22:35 +0000 (21:22 -0500)]
Merge pull request #8976 from nicola-giuliani/stl_handling
added stl read/write functions
Bruno Turcksin [Wed, 6 Nov 2019 21:32:18 +0000 (16:32 -0500)]
Fix Boost.Python CMake (#9011)
Fix Boost.Python CMake
Alexander Grayver [Wed, 6 Nov 2019 21:10:19 +0000 (22:10 +0100)]
Unset Boost_FOUND to get Boost.Python properly configured
Timo Heister [Wed, 6 Nov 2019 20:06:39 +0000 (15:06 -0500)]
use smaller type
Timo Heister [Wed, 6 Nov 2019 19:58:18 +0000 (14:58 -0500)]
add many other MPI tags
Timo Heister [Wed, 6 Nov 2019 16:43:53 +0000 (11:43 -0500)]
add missing file
Timo Heister [Wed, 6 Nov 2019 16:32:12 +0000 (11:32 -0500)]
use global list of MPI tags for collective communication
introduce Utilities::MPI::internal::Tags with a list of unique MPI tags.
part of #8958
Timo Heister [Wed, 6 Nov 2019 15:56:19 +0000 (10:56 -0500)]
Merge pull request #8994 from kronbichler/simplify_index_owner_internal
Slightly simplify MPI::ComputeIndexOwner::Dictionary range detection
Timo Heister [Wed, 6 Nov 2019 15:22:06 +0000 (10:22 -0500)]
Merge pull request #9008 from peterrum/indent-message-hint
Add a hint to the indention script
Peter Munch [Wed, 6 Nov 2019 06:28:45 +0000 (07:28 +0100)]
Add a hint to the indention script
Nicola Giuliani [Wed, 30 Oct 2019 13:06:33 +0000 (14:06 +0100)]
added stl read/write functions
post comments from wolfgang
added changes
Daniel Arndt [Wed, 6 Nov 2019 05:43:30 +0000 (00:43 -0500)]
Merge pull request #8962 from peterrum/gridout-vtk-optional-all
Output all faces and edges to vtk
Daniel Jodlbauer [Tue, 5 Nov 2019 16:40:23 +0000 (17:40 +0100)]
Add SIMD type to template list of MF-Operators
Daniel Arndt [Tue, 5 Nov 2019 15:46:09 +0000 (10:46 -0500)]
Merge pull request #9003 from tjhei/index_set_add_indices_64
fix 64bit IndexSet::add_indices
Timo Heister [Tue, 5 Nov 2019 14:13:09 +0000 (09:13 -0500)]
changelog
Peter Munch [Fri, 25 Oct 2019 16:15:09 +0000 (18:15 +0200)]
Output all faces and edges to vtk
Daniel Arndt [Tue, 5 Nov 2019 04:59:52 +0000 (23:59 -0500)]
Merge pull request #9001 from tjhei/use_collective_mutex2
protect more MPI communication with a CollectiveMutex
Timo Heister [Tue, 5 Nov 2019 03:03:03 +0000 (22:03 -0500)]
fix 64bit IndexSet::add_indices
the offset parameter needs to be 64 bit to allow shifting an IndexSet in
a large computation.
part of and hopefully a fix for #8937
Timo Heister [Tue, 5 Nov 2019 01:38:50 +0000 (20:38 -0500)]
return MPI_Comm by const ref
Fix a few places where we return the MPI_Comm by value. This is
problematic if we pass it to a function taking a reference and storing
it:
CollectiveMutex::ScopedLock lock(mutex, tria.get_communicator());
Timo Heister [Tue, 5 Nov 2019 01:26:12 +0000 (20:26 -0500)]
do not take a reference to the communicator
Timo Heister [Mon, 4 Nov 2019 19:23:56 +0000 (14:23 -0500)]
protect more MPI communication with a CollectiveMutex
- also replace a MPI_Probe with MPI_ANY_TAG
Daniel Arndt [Mon, 4 Nov 2019 21:11:42 +0000 (16:11 -0500)]
Merge pull request #8997 from tjhei/use_collective_mutex
use MPI::CollectiveMutex in several places
Daniel Arndt [Mon, 4 Nov 2019 21:11:15 +0000 (16:11 -0500)]
Merge pull request #8998 from rumajo/fix_gmsh_compilation
Fix compilation of gmsh support
Timo Heister [Mon, 4 Nov 2019 15:53:11 +0000 (10:53 -0500)]
move mutex down
Timo Heister [Fri, 1 Nov 2019 18:53:11 +0000 (14:53 -0400)]
use MPI::CollectiveMutex in several places
Wolfgang Bangerth [Mon, 4 Nov 2019 18:13:28 +0000 (11:13 -0700)]
Merge pull request #8933 from tjhei/wait_all_consensus
Avoid empty MPI_Waitall in consensus algorithm
Wolfgang Bangerth [Mon, 4 Nov 2019 18:06:23 +0000 (11:06 -0700)]
Merge pull request #8996 from masterleinad/use_face_iterators_tutorial
Use face_iterators in tutorials
Wolfgang Bangerth [Mon, 4 Nov 2019 18:01:20 +0000 (11:01 -0700)]
Merge pull request #8964 from tjhei/mpi_wait_finalizer
implement MPI::CollectiveMutex
Matthew Russell [Mon, 4 Nov 2019 16:19:15 +0000 (16:19 +0000)]
Fix compilation of gmsh support
Use std::ofstream rather than just ofstream.
Daniel Arndt [Mon, 4 Nov 2019 15:30:31 +0000 (10:30 -0500)]
Improve style
Timo Heister [Sat, 26 Oct 2019 09:02:52 +0000 (11:02 +0200)]
MPI_InitFinalize request tracking and MPI::CollectiveMutex
- implement mechanism to keep track of open MPI_Request
- implement CollectiveMutex
- add tests
Daniel Arndt [Mon, 4 Nov 2019 14:29:00 +0000 (09:29 -0500)]
Use face_iterators in tutorials
Daniel Arndt [Mon, 4 Nov 2019 14:27:32 +0000 (09:27 -0500)]
Implement face_iterators for DoFCellAccessors
Martin Kronbichler [Mon, 4 Nov 2019 13:33:07 +0000 (14:33 +0100)]
Merge pull request #8981 from peterrum/matrixfree_readcelldata
Add new read_cell_data to FEEvaluationBase for arbitrary data types
Martin Kronbichler [Mon, 4 Nov 2019 13:32:51 +0000 (14:32 +0100)]
Merge pull request #8983 from peterrum/matrixfree-pbc-hn-fix
Fix Matrixfree for periodic faces and hanging nodes
Martin Kronbichler [Mon, 4 Nov 2019 13:30:17 +0000 (14:30 +0100)]
Slightly simplify MPI::ComputeIndexOwner::Dictionary range detection
David Wells [Mon, 4 Nov 2019 00:49:45 +0000 (19:49 -0500)]
Merge pull request #8982 from peterrum/pft-pbcfix
Fix create_construction_data_from_triangulation for periodic boundaries
Wolfgang Bangerth [Sun, 3 Nov 2019 22:43:25 +0000 (15:43 -0700)]
Merge pull request #8979 from agrayver/fix_copy_tria
Do not transfer the MPI communicator when copying the triangulation
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