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https://gitweb.dealii.org/ - dealii.git/log
Simon Sticko [Fri, 31 Jan 2020 15:39:48 +0000 (16:39 +0100)]
Fix a few misprints in the SolutionTransfer documentation.
Luca Heltai [Thu, 30 Jan 2020 14:06:05 +0000 (15:06 +0100)]
Merge pull request #9434 from peterrum/ph_json_optional
Further changes to ParameterHandler::parse_input_from_json
Daniel Arndt [Thu, 30 Jan 2020 00:03:04 +0000 (19:03 -0500)]
Merge pull request #9445 from elauksap/parameter_handler_path_exists
Add ParameterHandler::subsection_path_exists
Daniel Arndt [Thu, 30 Jan 2020 00:02:49 +0000 (19:02 -0500)]
Merge pull request #9447 from GrahamBenHarper/graham_dev_polynomials_adini
Update PolynomialsAdini to derive from ScalarPolynomialsBase
grahambenharper [Mon, 27 Jan 2020 23:59:57 +0000 (16:59 -0700)]
Update PolynomialsAdini to derive from ScalarPolynomialsBase and add a test for it
Pasquale Africa [Tue, 28 Jan 2020 21:25:49 +0000 (21:25 +0000)]
Add ParameterHandler::subsection_path_exists()
Daniel Arndt [Wed, 29 Jan 2020 14:16:13 +0000 (09:16 -0500)]
Merge pull request #9156 from peterrum/ecl-partitioner
ECL: add partitioners
Wolfgang Bangerth [Wed, 29 Jan 2020 13:26:20 +0000 (06:26 -0700)]
Merge pull request #9407 from simonsticko/semi_flux_sparsity_pattern
make_flux_sparsity_pattern with flux couplings on a subset of the faces
Peter Munch [Sun, 8 Dec 2019 23:18:19 +0000 (00:18 +0100)]
Add ecl partitioners
Peter Munch [Mon, 27 Jan 2020 07:22:48 +0000 (08:22 +0100)]
Further changes to ParameterHandler::parse_input_from_json
Conflicts:
source/base/parameter_handler.cc
Luca Heltai [Wed, 29 Jan 2020 08:44:30 +0000 (09:44 +0100)]
Merge pull request #9171 from luca-heltai/symbolic-function
Symbolic function.
Simon Sticko [Tue, 14 Jan 2020 10:29:15 +0000 (11:29 +0100)]
make_flux_sparsity_pattern with flux couplings on a subset of the faces
Add an optional std::function input parameter to
make_flux_sparsity_pattern which describe over which faces there should
be flux couplings in the created sparsity pattern.
internal::make_flux_sparsity_pattern has one implementation for a
generic DoFHandlerType and a specialization for hp::DoFHandler. To
circument a bug where MSVC can't deduce which of these internal
functions should be called, change DoFHandlerType to
dealii::DoFHandler in the generic function.
To avoid another bug where MSVC can't construct a templated class,
call one of the overloaded versions of make_flux_sparsity_pattern with
always_couple_on_faces (even if this is already the default value).
Wolfgang Bangerth [Wed, 29 Jan 2020 00:18:58 +0000 (17:18 -0700)]
Merge pull request #9443 from tjhei/parameter_handler_cleanup
make two ParameterHandler members local to .cc
Wolfgang Bangerth [Tue, 28 Jan 2020 22:22:40 +0000 (15:22 -0700)]
Merge pull request #9444 from masterleinad/fix_fulldistributed_tests
Fix a few parallel::fullydistributed tests
Timo Heister [Tue, 28 Jan 2020 20:33:20 +0000 (15:33 -0500)]
make two ParameterHandler members local to .cc
These two (static) private member functions can also be in the anonymous
namespace instead. Follow-up to #9263
Daniel Arndt [Tue, 28 Jan 2020 20:47:53 +0000 (15:47 -0500)]
Fix a few parallel::fullydistributed tests
Wolfgang Bangerth [Tue, 28 Jan 2020 20:27:44 +0000 (13:27 -0700)]
Merge pull request #9441 from GrahamBenHarper/graham_dev_fully_dist
Remove fully_distributed_tria_util files
Timo Heister [Tue, 28 Jan 2020 20:19:52 +0000 (15:19 -0500)]
Merge pull request #9263 from elauksap/parameter_handler_sorting
ParameterHandler in unsorted order
grahambenharper [Tue, 28 Jan 2020 19:50:52 +0000 (12:50 -0700)]
Remove fully_distributed_tria_util files
Timo Heister [Tue, 28 Jan 2020 16:10:43 +0000 (11:10 -0500)]
Merge pull request #9437 from GrahamBenHarper/graham_dev_clean_compute
Update uses of compute() to evaluate()
Luca Heltai [Sat, 14 Dec 2019 20:03:03 +0000 (21:03 +0100)]
Symbolic function.
Pasquale Africa [Tue, 21 Jan 2020 23:23:00 +0000 (23:23 +0000)]
ParameterHandler can now print in unsorted order
Wolfgang Bangerth [Tue, 28 Jan 2020 04:19:15 +0000 (21:19 -0700)]
Merge pull request #9430 from peterrum/ph_json_action
Fix ParameterHandler::read_xml_recursively for actions
Wolfgang Bangerth [Tue, 28 Jan 2020 04:19:01 +0000 (21:19 -0700)]
Merge pull request #9432 from peterrum/tria_new_create_triangulation_followup
Fix remaining issues for #9195
Wolfgang Bangerth [Tue, 28 Jan 2020 04:18:27 +0000 (21:18 -0700)]
Merge pull request #9436 from GrahamBenHarper/graham_dev_clean_ex6
Remove unused included file from step-6
Wolfgang Bangerth [Mon, 27 Jan 2020 22:25:11 +0000 (15:25 -0700)]
Merge pull request #9431 from MFraters/fix_particle_probability_density_mpi_problem
Fix particle probability density mpi problem
Wolfgang Bangerth [Mon, 27 Jan 2020 22:17:05 +0000 (15:17 -0700)]
Merge pull request #9362 from peterrum/pft-order
New p:f:t tests
Daniel Arndt [Mon, 27 Jan 2020 22:06:54 +0000 (17:06 -0500)]
Merge pull request #9409 from bangerth/utilities
Update the documentation of int_to_string() and to_string().
grahambenharper [Mon, 27 Jan 2020 21:26:49 +0000 (14:26 -0700)]
Update documentation/implementation of some polynomial classes
grahambenharper [Mon, 27 Jan 2020 19:59:35 +0000 (12:59 -0700)]
Remove unused included file
Peter Munch [Sun, 26 Jan 2020 19:44:03 +0000 (20:44 +0100)]
Fix remaining issues for #9195
Peter Munch [Fri, 24 Jan 2020 15:36:04 +0000 (16:36 +0100)]
Fix ParameterHandler::read_xml_recursively for actions
Martin Kronbichler [Mon, 27 Jan 2020 12:06:59 +0000 (13:06 +0100)]
Merge pull request #9433 from masterleinad/fix-gcc-4.9.4
Fix gcc 4.9.4 warning
Martin Kronbichler [Mon, 27 Jan 2020 09:10:24 +0000 (10:10 +0100)]
Merge pull request #9388 from drwells/add-replicated-triangulation
Implement GridGenerator::replicate_triangulation().
Martin Kronbichler [Mon, 27 Jan 2020 08:54:28 +0000 (09:54 +0100)]
Merge pull request #9413 from bangerth/type-erasure
Add a note to two .h files about the design pattern used there.
Daniel Arndt [Mon, 27 Jan 2020 04:20:06 +0000 (23:20 -0500)]
Fix gcc 4.9.4 warning
Peter Munch [Fri, 17 Jan 2020 04:43:22 +0000 (05:43 +0100)]
Tests to ensure that the order of pft and be the base triangulations are the same
David Wells [Tue, 14 Jan 2020 04:21:45 +0000 (23:21 -0500)]
Implement GridGenerator::replicate_triangulation().
David Wells [Sun, 26 Jan 2020 04:51:38 +0000 (23:51 -0500)]
Merge pull request #9207 from bangerth/umfpack
Implement the solution of complex linear systems using UMFPACK.
Daniel Arndt [Sun, 26 Jan 2020 02:02:27 +0000 (21:02 -0500)]
Merge pull request #9419 from GrahamBenHarper/graham_dev_clean_fepoly
Remove seemingly unused code in fe_poly.cc
Daniel Arndt [Sun, 26 Jan 2020 02:00:20 +0000 (21:00 -0500)]
Merge pull request #9410 from bangerth/utilities-2
Use std::to_string() instead of boost lexical_cast.
Wolfgang Bangerth [Thu, 23 Jan 2020 01:37:07 +0000 (18:37 -0700)]
Selectively disable complex UMFPACK instantiations if DEAL_II_WITH_COMPLEX=OFF.
David Wells [Sat, 25 Jan 2020 21:13:11 +0000 (16:13 -0500)]
Merge pull request #9415 from bangerth/face_indices
Introduce GeometryInfo::face_indices()
Daniel Arndt [Sat, 25 Jan 2020 18:51:30 +0000 (13:51 -0500)]
Merge pull request #9421 from bangerth/error
Improve an error message.
MFraters [Sat, 25 Jan 2020 18:22:56 +0000 (10:22 -0800)]
Update source/particles/generators.cc
Co-Authored-By: Daniel Arndt <arndtd@ornl.gov>
Menno Fraters [Sat, 25 Jan 2020 08:24:39 +0000 (00:24 -0800)]
add test with 3 mpi processes and 4 particles.
Menno Fraters [Sat, 25 Jan 2020 08:24:32 +0000 (00:24 -0800)]
add test with 3 mpi processes and 3 particles.
Menno Fraters [Sat, 25 Jan 2020 08:24:23 +0000 (00:24 -0800)]
add test with 3 mpi processes and 2 particles.
Menno Fraters [Sat, 25 Jan 2020 08:23:47 +0000 (00:23 -0800)]
add test with 3 mpi processes and 1 particle.
Menno Fraters [Sat, 25 Jan 2020 05:52:33 +0000 (21:52 -0800)]
fix local_end_weight definition.
Daniel Arndt [Sat, 25 Jan 2020 05:52:23 +0000 (00:52 -0500)]
Merge pull request #9423 from krishnakumarg1984/step2_remove_unwanted_include
removes an unwanted include file manifold_lib.h from step-2
Daniel Arndt [Sat, 25 Jan 2020 04:57:57 +0000 (23:57 -0500)]
Add mailmap entry
Menno Fraters [Sat, 25 Jan 2020 02:39:20 +0000 (18:39 -0800)]
Fix particle probability density mpi problem
Wolfgang Bangerth [Fri, 24 Jan 2020 22:21:55 +0000 (15:21 -0700)]
Merge pull request #9414 from tjhei/step12-data_out
step-12: use add_data_vector with DoFHandler
Timo Heister [Wed, 22 Jan 2020 01:50:45 +0000 (20:50 -0500)]
step-12: use add_data_vector with DoFHandler
Otherwise data output breaks if you switch to DG(0) (cell vs dof
dataout).
Wolfgang Bangerth [Thu, 23 Jan 2020 17:46:38 +0000 (10:46 -0700)]
Merge pull request #9422 from masterleinad/restrict_fe_series_02
Restrict fe_series_02
Krishnakumar Gopalakrishnan [Thu, 23 Jan 2020 17:35:07 +0000 (17:35 +0000)]
removes an unwanted include file manifold_lib.h from step-2
Daniel Arndt [Thu, 23 Jan 2020 17:19:06 +0000 (12:19 -0500)]
Restrict fe_series_02
Wolfgang Bangerth [Thu, 23 Jan 2020 17:11:55 +0000 (10:11 -0700)]
Improve an error message.
Martin Kronbichler [Thu, 23 Jan 2020 11:25:34 +0000 (12:25 +0100)]
Merge pull request #9402 from drwells/move-71-47
Rename step-71 to step-47.
Martin Kronbichler [Thu, 23 Jan 2020 11:23:55 +0000 (12:23 +0100)]
Merge pull request #9411 from bangerth/7
Augment introduction to step-7.
Daniel Arndt [Thu, 23 Jan 2020 05:52:06 +0000 (00:52 -0500)]
Merge pull request #9416 from bangerth/20
Mention namespaces in step-20.
Bruno Turcksin [Thu, 23 Jan 2020 00:33:00 +0000 (19:33 -0500)]
Clarify what the graph represents. (#9417)
Clarify what the graph represents.
Wolfgang Bangerth [Thu, 23 Jan 2020 00:26:21 +0000 (17:26 -0700)]
Break a long string onto shorter lines.
Wolfgang Bangerth [Thu, 23 Jan 2020 00:08:10 +0000 (17:08 -0700)]
Clarify when we actually call to std::to_string.
Wolfgang Bangerth [Thu, 23 Jan 2020 00:06:06 +0000 (17:06 -0700)]
Reintroduce boost::lexical_cast for everything but integers.
Wolfgang Bangerth [Tue, 21 Jan 2020 18:12:56 +0000 (11:12 -0700)]
Use std::to_string() instead of boost lexical_cast.
grahambenharper [Thu, 23 Jan 2020 00:02:42 +0000 (17:02 -0700)]
Remove seemingly unreachable code in fe_poly.cc
Wolfgang Bangerth [Wed, 22 Jan 2020 23:57:51 +0000 (16:57 -0700)]
Clarify what the graph represents.
Wolfgang Bangerth [Wed, 22 Jan 2020 23:51:37 +0000 (16:51 -0700)]
Mention namespaces in step-20.
Wolfgang Bangerth [Wed, 22 Jan 2020 23:20:53 +0000 (16:20 -0700)]
Merge pull request #9309 from marcfehling/feseries-serialize
FESeries: Added features to precalculate all matrices and serialize them.
Wolfgang Bangerth [Wed, 22 Jan 2020 03:00:08 +0000 (20:00 -0700)]
Use GeometryInfo::face_indices().
Wolfgang Bangerth [Tue, 21 Jan 2020 23:44:36 +0000 (16:44 -0700)]
Add a note to two .h files about the design pattern used there.
Daniel Arndt [Wed, 22 Jan 2020 05:40:46 +0000 (00:40 -0500)]
Merge pull request #9412 from tjhei/step-12-remove-constraints
remove unused variable in step-12
Wolfgang Bangerth [Wed, 22 Jan 2020 02:59:54 +0000 (19:59 -0700)]
Provide GeometryInfo::face_indices().
Marc Fehling [Mon, 13 Jan 2020 21:08:38 +0000 (22:08 +0100)]
FESeries: Added features to precalculate transformation matrices and to save/load them.
Marc Fehling [Thu, 16 Jan 2020 11:56:45 +0000 (12:56 +0100)]
hp::QCollection: Added equality operator.
Wolfgang Bangerth [Tue, 21 Jan 2020 22:39:38 +0000 (15:39 -0700)]
Merge pull request #9195 from peterrum/tria_new_create_triangulation
Create new dealii::Triangulation::create_triangulation()
Timo Heister [Tue, 21 Jan 2020 21:39:59 +0000 (16:39 -0500)]
remove unused variable in step-12
Wolfgang Bangerth [Tue, 21 Jan 2020 18:09:45 +0000 (11:09 -0700)]
Update the documentation of int_to_string() and to_string().
David Wells [Mon, 20 Jan 2020 15:33:20 +0000 (10:33 -0500)]
Rename step-71 to step-47.
This fills an empty hole in the tutorial graph.
Wolfgang Bangerth [Tue, 21 Jan 2020 18:28:22 +0000 (11:28 -0700)]
Augment introduction to step-7.
Timo Heister [Tue, 21 Jan 2020 15:20:35 +0000 (10:20 -0500)]
Merge pull request #9408 from drwells/fix-channel-doc-2
Clarify a channel limit.
David Wells [Tue, 21 Jan 2020 14:33:11 +0000 (09:33 -0500)]
Clarify a channel limit.
This is a bit tricky since the BlockVector needs channels 100 to 200, but the
class itself should only use 0 to 100.
Daniel Arndt [Tue, 21 Jan 2020 01:47:10 +0000 (20:47 -0500)]
Merge pull request #9401 from drwells/fix-channel-doc
Make channel limits consistent.
David Wells [Tue, 21 Jan 2020 01:01:23 +0000 (20:01 -0500)]
Merge pull request #9398 from simonsticko/fix_make_flux_sparsity_pattern_1D
Fix 1D-bug in one version of make_flux_sparsity_pattern
David Wells [Tue, 21 Jan 2020 01:01:11 +0000 (20:01 -0500)]
Merge pull request #9400 from drwells/use-std-to-string
Utilities::to_string -> std::to_string
David Wells [Mon, 20 Jan 2020 23:03:33 +0000 (18:03 -0500)]
Merge pull request #9404 from tjhei/ci_cxx11
CI: disable cxx14 for the serial linux build
David Wells [Mon, 20 Jan 2020 15:16:31 +0000 (10:16 -0500)]
Utilities::to_string -> std::to_string
None of these use the second arguments for padding so we might as well
use the standard library function.
Timo Heister [Mon, 20 Jan 2020 15:57:48 +0000 (10:57 -0500)]
CI: disable cxx14 for the serial linux build
David Wells [Mon, 20 Jan 2020 17:00:24 +0000 (12:00 -0500)]
Merge pull request #9403 from tjhei/readme_osx_github_actions
add github actions OSX to readme
David Wells [Mon, 20 Jan 2020 16:38:48 +0000 (11:38 -0500)]
Check the value of the communication channel.
The block vector class assumes it can use 100-199, where 200 is the
limit set by the Partitioner class.
Martin Kronbichler [Mon, 20 Jan 2020 16:50:39 +0000 (17:50 +0100)]
Merge pull request #9399 from masterleinad/fix_compiling_c++11
Fix compiling for C++11
Timo Heister [Mon, 20 Jan 2020 15:56:12 +0000 (10:56 -0500)]
add github actions OSX to readme
Daniel Arndt [Mon, 20 Jan 2020 14:29:27 +0000 (09:29 -0500)]
Fix compiling for C++11
Timo Heister [Mon, 20 Jan 2020 13:27:00 +0000 (08:27 -0500)]
Merge pull request #9397 from masterleinad/test_indentation_macos
Test indentation script on Mac OSX
Simon Sticko [Fri, 17 Jan 2020 16:59:07 +0000 (17:59 +0100)]
Fix 1D bug in one version of make_flux_sparsity_pattern.
When a neighbor has children, the function loops over each face and the
children of each face_iterator. But in 1D the number of children of a
face is always zero. The result is that flux-couplings are missed in
the 1D case when not all cells are on the same level.
Fix this by avoiding to iterate over the children of the face in 1D.
This is the same solutions that is already used in line 597 of
source/dofs/dof_tools_sparsity.cc.
Simon Sticko [Fri, 17 Jan 2020 16:34:48 +0000 (17:34 +0100)]
Instantiate hp version of make_flux_sparsity_pattern in 1D.
The version of make_flux_sparsity_pattern that takes cell and face
couplings is not instantiated for hp::DoFHandler in 1D. Trying to
compile code using it leads to a linking error. Instantiate the
function.
Simon Sticko [Fri, 17 Jan 2020 16:10:04 +0000 (17:10 +0100)]
Add test of make_flux_sparsity_pattern in 1D.
For the version of make_flux_sparsity_pattern that takes face and cell
couplings, add a 1D test that fails for both types of DoFHandler. For
dealii::DoFHandler it fails because there is a bug in 1D and for the hp
case it fails because make_flux_sparsity_pattern isn't instantiated in
the 1D case.
Daniel Arndt [Sun, 19 Jan 2020 19:54:39 +0000 (14:54 -0500)]
Test indentation script on Mac OSX
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