]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
4 years agoCI: github actions: checkout@v2 9864/head
Timo Heister [Thu, 9 Apr 2020 16:26:17 +0000 (12:26 -0400)]
CI: github actions: checkout@v2

update checkout action to @v2. This should avoid errors when rerunning a
job about "reference is not a tree".

4 years agoMerge pull request #9860 from masterleinad/remove_more_deprecation
Martin Kronbichler [Thu, 9 Apr 2020 05:13:12 +0000 (07:13 +0200)]
Merge pull request #9860 from masterleinad/remove_more_deprecation

Remove more deprecations

4 years agoMerge pull request #9861 from masterleinad/improve_cell_weihts_doc
Wolfgang Bangerth [Wed, 8 Apr 2020 20:32:15 +0000 (22:32 +0200)]
Merge pull request #9861 from masterleinad/improve_cell_weihts_doc

Improve CellWeights documentation

4 years agoMerge pull request #9852 from simonsticko/bounding_box_fixes
Wolfgang Bangerth [Wed, 8 Apr 2020 20:25:32 +0000 (22:25 +0200)]
Merge pull request #9852 from simonsticko/bounding_box_fixes

Minor fixes to BoundingBox

4 years agoImprove CellWeights documentation 9861/head
Daniel Arndt [Wed, 8 Apr 2020 19:25:27 +0000 (15:25 -0400)]
Improve CellWeights documentation

4 years agoMerge pull request #9859 from masterleinad/doxygen_fixes
Daniel Arndt [Wed, 8 Apr 2020 19:15:10 +0000 (15:15 -0400)]
Merge pull request #9859 from masterleinad/doxygen_fixes

Some doxygen fixes

4 years agoMerge pull request #9854 from dangars/cross_compiling_documentation
Matthias Maier [Wed, 8 Apr 2020 18:37:15 +0000 (13:37 -0500)]
Merge pull request #9854 from dangars/cross_compiling_documentation

Update the cross compilation documentation

4 years agoRemove some deprecated functions and variables 9860/head
Daniel Arndt [Wed, 8 Apr 2020 16:27:43 +0000 (12:27 -0400)]
Remove some deprecated functions and variables

4 years agoUpdate the cross compilation documentation 9854/head
Daniel Garcia-Sanchez [Wed, 8 Apr 2020 18:18:23 +0000 (20:18 +0200)]
Update the cross compilation documentation

4 years agoSome doxygen fixes 9859/head
Daniel Arndt [Wed, 8 Apr 2020 16:14:33 +0000 (12:14 -0400)]
Some doxygen fixes

4 years agoMerge pull request #9858 from kronbichler/test_fixes
Martin Kronbichler [Wed, 8 Apr 2020 15:58:29 +0000 (17:58 +0200)]
Merge pull request #9858 from kronbichler/test_fixes

Fix two tests with roundoff problems

4 years agoMerge pull request #9376 from luca-heltai/read-write-vtu
Daniel Arndt [Wed, 8 Apr 2020 13:47:51 +0000 (09:47 -0400)]
Merge pull request #9376 from luca-heltai/read-write-vtu

Read and write vtu files

4 years agoRelax absolute tolerance on test with numbers up to 1e9 9858/head
Martin Kronbichler [Wed, 8 Apr 2020 12:46:34 +0000 (14:46 +0200)]
Relax absolute tolerance on test with numbers up to 1e9

4 years agoMake test more robust by printing some data
Martin Kronbichler [Wed, 8 Apr 2020 12:46:01 +0000 (14:46 +0200)]
Make test more robust by printing some data

4 years agoThree small documentation fixes related to BoundingBox. 9852/head
Simon Sticko [Tue, 7 Apr 2020 19:02:25 +0000 (21:02 +0200)]
Three small documentation fixes related to BoundingBox.

4 years agoMove function coordinate_to_one_dim_higher to an internal namespace.
Simon Sticko [Tue, 7 Apr 2020 18:48:05 +0000 (20:48 +0200)]
Move function coordinate_to_one_dim_higher to an internal namespace.

4 years agoMerge pull request #9857 from kronbichler/output_variant_grid_generator_01b
Wolfgang Bangerth [Wed, 8 Apr 2020 12:09:01 +0000 (14:09 +0200)]
Merge pull request #9857 from kronbichler/output_variant_grid_generator_01b

Output more digits for test grid/grid_generator_01b

4 years agoOutput more digits in test grid/grid_generator_01b 9857/head
Martin Kronbichler [Wed, 8 Apr 2020 10:41:07 +0000 (12:41 +0200)]
Output more digits in test grid/grid_generator_01b

4 years agoMerge pull request #9850 from bangerth/discrete-time
Martin Kronbichler [Wed, 8 Apr 2020 09:06:24 +0000 (11:06 +0200)]
Merge pull request #9850 from bangerth/discrete-time

Document the mental model of DiscreteTime.

4 years agoMerge pull request #9683 from kronbichler/mf_remove_cells_close_to_bdry
Martin Kronbichler [Wed, 8 Apr 2020 09:04:15 +0000 (11:04 +0200)]
Merge pull request #9683 from kronbichler/mf_remove_cells_close_to_bdry

MF: No special treatment of cells close to proc interface

4 years agoWrite and read VTU format that contains serialized triangulation. 9376/head
Luca Heltai [Fri, 17 Jan 2020 17:23:15 +0000 (18:23 +0100)]
Write and read VTU format that contains serialized triangulation.

4 years agoMerge pull request #9817 from bangerth/compiler-versions
Martin Kronbichler [Wed, 8 Apr 2020 08:59:06 +0000 (10:59 +0200)]
Merge pull request #9817 from bangerth/compiler-versions

Require gcc 4.9 and clang 4.0.

4 years agoMerge pull request #9848 from tjhei/ci_github_actions_linux
Martin Kronbichler [Wed, 8 Apr 2020 08:58:23 +0000 (10:58 +0200)]
Merge pull request #9848 from tjhei/ci_github_actions_linux

[CI]: add GitHub actions linux release build

4 years agoMerge pull request #9851 from tjhei/ci_ga_remove_release_osx
Martin Kronbichler [Wed, 8 Apr 2020 08:57:49 +0000 (10:57 +0200)]
Merge pull request #9851 from tjhei/ci_ga_remove_release_osx

do not build release on github actions OSX

4 years agoMerge pull request #9777 from agrayver/step_53_python
Martin Kronbichler [Wed, 8 Apr 2020 08:57:28 +0000 (10:57 +0200)]
Merge pull request #9777 from agrayver/step_53_python

Add Python version of step-53

4 years agoMF: No special treatment of cells close to proc interface 9683/head
Martin Kronbichler [Thu, 19 Mar 2020 14:00:38 +0000 (15:00 +0100)]
MF: No special treatment of cells close to proc interface

4 years agoadd linux release build 9848/head
Timo Heister [Tue, 7 Apr 2020 14:36:19 +0000 (10:36 -0400)]
add linux release build

4 years agoDocument the mental model of DiscreteTime. 9850/head
Wolfgang Bangerth [Tue, 7 Apr 2020 16:49:57 +0000 (10:49 -0600)]
Document the mental model of DiscreteTime.

4 years agoMerge pull request #9849 from masterleinad/fix_tests_werror
Daniel Arndt [Tue, 7 Apr 2020 19:49:39 +0000 (15:49 -0400)]
Merge pull request #9849 from masterleinad/fix_tests_werror

Fix some warnings in tests with clang-10

4 years agoRename function create_unit_box() to create_unit_bounding_box().
Simon Sticko [Tue, 7 Apr 2020 18:41:27 +0000 (20:41 +0200)]
Rename function create_unit_box() to create_unit_bounding_box().

4 years agoMerge pull request #9846 from kronbichler/documentation_noncontig_partitioner
Wolfgang Bangerth [Tue, 7 Apr 2020 18:18:24 +0000 (20:18 +0200)]
Merge pull request #9846 from kronbichler/documentation_noncontig_partitioner

Update documentation of NoncontiguousPartitioner

4 years agodo not build release on github actions OSX 9851/head
Timo Heister [Tue, 7 Apr 2020 18:15:29 +0000 (14:15 -0400)]
do not build release on github actions OSX

revert #9844

Github only does 5 parallel OSX builds per projectand now each of them
takes close to 2 hours. This is a bit too slow.

4 years agoMerge pull request #9815 from bangerth/complex-vectors
Martin Kronbichler [Tue, 7 Apr 2020 17:54:22 +0000 (19:54 +0200)]
Merge pull request #9815 from bangerth/complex-vectors

Allow outputting complex-valued vector and tensor fields

4 years agoFix unused warning 9849/head
Daniel Arndt [Tue, 7 Apr 2020 17:47:41 +0000 (13:47 -0400)]
Fix unused warning

4 years agoFix some warnings in tests with clang-10
Daniel Arndt [Tue, 7 Apr 2020 16:28:41 +0000 (12:28 -0400)]
Fix some warnings in tests with clang-10

4 years agoMerge pull request #9819 from peterrum/compute_union
Daniel Arndt [Tue, 7 Apr 2020 15:55:15 +0000 (11:55 -0400)]
Merge pull request #9819 from peterrum/compute_union

Add Utilities::MPI::compute_set_union

4 years agoMerge pull request #9718 from nfehn/parameter_handler
Wolfgang Bangerth [Tue, 7 Apr 2020 15:37:24 +0000 (17:37 +0200)]
Merge pull request #9718 from nfehn/parameter_handler

improve robustness and usability of ParameterHandler

4 years agoMerge pull request #9845 from rezarastak/doxygen_warnings_1
Wolfgang Bangerth [Tue, 7 Apr 2020 15:36:27 +0000 (17:36 +0200)]
Merge pull request #9845 from rezarastak/doxygen_warnings_1

Fix some Doxygen warnings

4 years agoMerge pull request #9831 from simonsticko/hypercube_to_bounding_box
Daniel Arndt [Tue, 7 Apr 2020 14:45:47 +0000 (10:45 -0400)]
Merge pull request #9831 from simonsticko/hypercube_to_bounding_box

Implement functionality from Hypercube on BoundingBox

4 years agoMerge pull request #9844 from masterleinad/build_debug_and_release
David Wells [Tue, 7 Apr 2020 13:39:24 +0000 (09:39 -0400)]
Merge pull request #9844 from masterleinad/build_debug_and_release

Build debug and release with Actions

4 years agoimprove usability of ParameterHandler 9718/head
Niklas Fehn [Mon, 23 Mar 2020 12:03:50 +0000 (13:03 +0100)]
improve usability of ParameterHandler

4 years agoSlightly reformulate documentation of BoundingBox 9831/head
Simon Sticko [Tue, 7 Apr 2020 13:02:05 +0000 (15:02 +0200)]
Slightly reformulate documentation of BoundingBox

Co-Authored-By: Martin Kronbichler <kronbichler@lnm.mw.tum.de>
4 years agoMerge pull request #9821 from masterleinad/remove_shift
Martin Kronbichler [Tue, 7 Apr 2020 12:44:07 +0000 (14:44 +0200)]
Merge pull request #9821 from masterleinad/remove_shift

Remove deprecated class PArpackSolver::Shift

4 years agoMerge pull request #9841 from masterleinad/convert_loops
Martin Kronbichler [Tue, 7 Apr 2020 12:28:34 +0000 (14:28 +0200)]
Merge pull request #9841 from masterleinad/convert_loops

Use more range-based for loops.

4 years agoMention notebook in the original program 9777/head
Alexander Grayver [Mon, 30 Mar 2020 12:23:38 +0000 (14:23 +0200)]
Mention notebook in the original program

4 years agoAdd step-53 python
Alexander Grayver [Mon, 30 Mar 2020 12:03:47 +0000 (14:03 +0200)]
Add step-53 python

4 years agoAdd Utilities::MPI::compute_set_union 9819/head
Peter Munch [Tue, 7 Apr 2020 08:33:06 +0000 (10:33 +0200)]
Add Utilities::MPI::compute_set_union

4 years agoAdd Utilities::MPI::compute_union
Peter Munch [Sat, 4 Apr 2020 18:18:24 +0000 (20:18 +0200)]
Add Utilities::MPI::compute_union

4 years agoUpdate documentation of NoncontiguousPartitioner 9846/head
Martin Kronbichler [Tue, 7 Apr 2020 05:54:07 +0000 (07:54 +0200)]
Update documentation of NoncontiguousPartitioner

4 years agoFix some Doxygen warnings 9845/head
Reza Rastak [Tue, 7 Apr 2020 02:14:27 +0000 (19:14 -0700)]
Fix some Doxygen warnings

4 years agoMerge pull request #9842 from dangars/step62_complex_vector_output
Daniel Arndt [Tue, 7 Apr 2020 00:23:51 +0000 (20:23 -0400)]
Merge pull request #9842 from dangars/step62_complex_vector_output

Output step-62 results as a complex-valued vector

4 years agoAdd a test for complex-valued tensors. 9815/head
Wolfgang Bangerth [Sat, 4 Apr 2020 04:01:07 +0000 (22:01 -0600)]
Add a test for complex-valued tensors.

4 years agoAdd tests for complex-valued vector fields.
Wolfgang Bangerth [Fri, 3 Apr 2020 22:57:24 +0000 (16:57 -0600)]
Add tests for complex-valued vector fields.

4 years agoFix the order in which we output complex-valued vectors/tensors.
Wolfgang Bangerth [Sat, 4 Apr 2020 00:12:28 +0000 (18:12 -0600)]
Fix the order in which we output complex-valued vectors/tensors.

4 years agoRemove a comment no longer relevant.
Wolfgang Bangerth [Sat, 4 Apr 2020 00:20:32 +0000 (18:20 -0600)]
Remove a comment no longer relevant.

4 years agoUse better variable names.
Wolfgang Bangerth [Fri, 3 Apr 2020 23:03:43 +0000 (17:03 -0600)]
Use better variable names.

4 years agoMake sure DataOut exports vector/tensor data correctly for complex-valued cases.
Wolfgang Bangerth [Fri, 3 Apr 2020 22:57:05 +0000 (16:57 -0600)]
Make sure DataOut exports vector/tensor data correctly for complex-valued cases.

4 years agoBuild debug and release with Actions 9844/head
Daniel Arndt [Mon, 6 Apr 2020 21:50:40 +0000 (17:50 -0400)]
Build debug and release with Actions

4 years agoUse std::fill for std::vector<bool> 9841/head
Daniel Arndt [Mon, 6 Apr 2020 21:12:26 +0000 (17:12 -0400)]
Use std::fill for std::vector<bool>

4 years agoOutput results as a complex-valued vector 9842/head
Daniel Garcia-Sanchez [Mon, 6 Apr 2020 20:46:47 +0000 (22:46 +0200)]
Output results as a complex-valued vector

4 years agoReplace some loops
Daniel Arndt [Mon, 6 Apr 2020 17:30:26 +0000 (13:30 -0400)]
Replace some loops

4 years agoMerge pull request #9827 from kronbichler/fix_get_position_vector
Daniel Arndt [Mon, 6 Apr 2020 19:53:21 +0000 (15:53 -0400)]
Merge pull request #9827 from kronbichler/fix_get_position_vector

Fix bug in VectorTools::get_position_vector for high order mappings

4 years agoMerge pull request #9838 from jwitte08/step47
Wolfgang Bangerth [Mon, 6 Apr 2020 14:59:21 +0000 (16:59 +0200)]
Merge pull request #9838 from jwitte08/step47

step-47 - fix typos

4 years agoMerge pull request #9822 from kronbichler/improve_documentation_hyperball
Wolfgang Bangerth [Mon, 6 Apr 2020 14:50:59 +0000 (16:50 +0200)]
Merge pull request #9822 from kronbichler/improve_documentation_hyperball

Place figures for 2d/3d quarter hyper ball in same line

4 years agofix typos 9838/head
Julius Witte [Mon, 6 Apr 2020 14:07:30 +0000 (16:07 +0200)]
fix typos

4 years agoMerge pull request #9792 from dougshidong/vector_adaptor_ghosted
Luca Heltai [Mon, 6 Apr 2020 13:45:17 +0000 (15:45 +0200)]
Merge pull request #9792 from dougshidong/vector_adaptor_ghosted

Allow vector_adaptor to work on ghosted vectors.

4 years agoMerge pull request #9836 from peterrum/tpetra_doxygen
Martin Kronbichler [Mon, 6 Apr 2020 09:52:17 +0000 (11:52 +0200)]
Merge pull request #9836 from peterrum/tpetra_doxygen

Make TpetraWrappers appear in Doxygen

4 years agoMake TpetraWrappers appear in Doxygen 9836/head
Peter Munch [Mon, 6 Apr 2020 06:42:42 +0000 (08:42 +0200)]
Make TpetraWrappers appear in Doxygen

4 years agoMerge pull request #9837 from peterrum/epetra_link_update
Jean-Paul Pelteret [Mon, 6 Apr 2020 09:24:00 +0000 (11:24 +0200)]
Merge pull request #9837 from peterrum/epetra_link_update

Update Epetra link

4 years agoAdd test case by Doug Shi-Dong 9827/head
Martin Kronbichler [Mon, 6 Apr 2020 06:56:48 +0000 (08:56 +0200)]
Add test case by Doug Shi-Dong

4 years agoUpdate Epetra link 9837/head
Peter Munch [Mon, 6 Apr 2020 06:50:28 +0000 (08:50 +0200)]
Update Epetra link

4 years agoChangelog
Martin Kronbichler [Sun, 5 Apr 2020 11:45:45 +0000 (13:45 +0200)]
Changelog

4 years agoMerge pull request #9834 from tamiko/typos_1
David Wells [Mon, 6 Apr 2020 00:44:13 +0000 (20:44 -0400)]
Merge pull request #9834 from tamiko/typos_1

Step-63: Fix two typos

4 years agoMerge pull request #9803 from kronbichler/fix_hyperball_manifold_2d
David Wells [Mon, 6 Apr 2020 00:41:55 +0000 (20:41 -0400)]
Merge pull request #9803 from kronbichler/fix_hyperball_manifold_2d

Fix oversight in GridGenerator::hyper_ball in 2d

4 years agoStep-63: Fix two typos 9834/head
Matthias Maier [Mon, 6 Apr 2020 00:20:27 +0000 (19:20 -0500)]
Step-63: Fix two typos

4 years agoMerge pull request #9825 from peterrum/mpi_fix_warning
Martin Kronbichler [Sun, 5 Apr 2020 21:36:54 +0000 (23:36 +0200)]
Merge pull request #9825 from peterrum/mpi_fix_warning

Fix warning in Utilities::MPI for serial release build

4 years agoRemove class Hypercube.
Simon Sticko [Sun, 5 Apr 2020 19:16:50 +0000 (21:16 +0200)]
Remove class Hypercube.

Since it is very similar to the the BoundingBox class and the missing
functionality now has been added to BoundingBox.

4 years agoImplement functionality from Hypercube on BoundingBox.
Simon Sticko [Sun, 5 Apr 2020 19:14:54 +0000 (21:14 +0200)]
Implement functionality from Hypercube on BoundingBox.

The two classes are very similar. Implement the functionality from
Hypercube on Boundingbox so that the Hypercube class can be removed.

4 years agoFix warning in Utilities::MPI for serial release build 9825/head
Peter Munch [Sun, 5 Apr 2020 10:04:20 +0000 (12:04 +0200)]
Fix warning in Utilities::MPI for serial release build

4 years agoMerge pull request #9795 from peterrum/grid_in_fix
Martin Kronbichler [Sun, 5 Apr 2020 14:48:46 +0000 (16:48 +0200)]
Merge pull request #9795 from peterrum/grid_in_fix

Fix GridIn::read_vtk

4 years agoMerge pull request #9797 from peterrum/dofaccessor_remove_unused_function
Martin Kronbichler [Sun, 5 Apr 2020 14:48:21 +0000 (16:48 +0200)]
Merge pull request #9797 from peterrum/dofaccessor_remove_unused_function

Remove unused functions

4 years agoTest case
Martin Kronbichler [Sun, 5 Apr 2020 11:43:59 +0000 (13:43 +0200)]
Test case

4 years agoFix bug in VectorTools::get_position_vector for high order mappings
Martin Kronbichler [Sun, 5 Apr 2020 11:42:57 +0000 (13:42 +0200)]
Fix bug in VectorTools::get_position_vector for high order mappings

4 years agoFix GridIn::read_vtk 9795/head
Peter Munch [Thu, 2 Apr 2020 10:58:18 +0000 (12:58 +0200)]
Fix GridIn::read_vtk

4 years agoRemove unused function 9797/head
Peter Munch [Thu, 2 Apr 2020 14:23:20 +0000 (16:23 +0200)]
Remove unused function

4 years agoPlace figures for 2d/3d quarter hyper ball in same line 9822/head
Martin Kronbichler [Sun, 5 Apr 2020 06:38:48 +0000 (08:38 +0200)]
Place figures for 2d/3d quarter hyper ball in same line

4 years agoRemove deprecated class PArpackSolver::Shift 9821/head
Daniel Arndt [Thu, 26 Mar 2020 16:08:55 +0000 (12:08 -0400)]
Remove deprecated class PArpackSolver::Shift

4 years agoMerge pull request #9707 from peterrum/json_reduced_print
Daniel Arndt [Sun, 5 Apr 2020 00:10:07 +0000 (20:10 -0400)]
Merge pull request #9707 from peterrum/json_reduced_print

Print a reduced parameter tree for XML and JSON

4 years agoMerge pull request #9739 from nfehn/grid_tools
Martin Kronbichler [Sat, 4 Apr 2020 21:14:04 +0000 (23:14 +0200)]
Merge pull request #9739 from nfehn/grid_tools

GridTools/GridGenerator: add some functions to support dim-independent programming

4 years agoMerge pull request #9799 from bangerth/cleanup
Martin Kronbichler [Sat, 4 Apr 2020 21:12:25 +0000 (23:12 +0200)]
Merge pull request #9799 from bangerth/cleanup

Minor cleanups.

4 years agoMerge pull request #9808 from peterrum/dof_accessor_simplify_update_cell_dof_indices_...
Martin Kronbichler [Sat, 4 Apr 2020 21:12:04 +0000 (23:12 +0200)]
Merge pull request #9808 from peterrum/dof_accessor_simplify_update_cell_dof_indices_cache

Simplify DoFCellAccessorImplementation::update_cell_dof_indices_cache()

4 years agoMerge pull request #9805 from bangerth/69
Martin Kronbichler [Sat, 4 Apr 2020 21:08:54 +0000 (23:08 +0200)]
Merge pull request #9805 from bangerth/69

Make the spelling of 'add_parameter()' arguments consistent.

4 years agoMerge pull request #9816 from tjhei/boost_guard2
Martin Kronbichler [Sat, 4 Apr 2020 21:08:19 +0000 (23:08 +0200)]
Merge pull request #9816 from tjhei/boost_guard2

more boost warning guards

4 years agoFix oversight in GridGenerator::hyper_ball in 2d 9803/head
Martin Kronbichler [Thu, 2 Apr 2020 20:33:00 +0000 (22:33 +0200)]
Fix oversight in GridGenerator::hyper_ball in 2d

4 years agoMerge pull request #9818 from bangerth/doxygen
Timo Heister [Sat, 4 Apr 2020 18:38:08 +0000 (14:38 -0400)]
Merge pull request #9818 from bangerth/doxygen

A few doxygen-related fixes.

4 years agoA few doxygen-related fixes. 9818/head
Wolfgang Bangerth [Sat, 4 Apr 2020 18:09:15 +0000 (12:09 -0600)]
A few doxygen-related fixes.

4 years agoMerge pull request #8824 from rezarastak/discrete_time
Wolfgang Bangerth [Sat, 4 Apr 2020 17:50:23 +0000 (19:50 +0200)]
Merge pull request #8824 from rezarastak/discrete_time

The class DiscreteTime implemented.

4 years agoRequire gcc 4.9 and clang 4.0. 9817/head
Wolfgang Bangerth [Sat, 4 Apr 2020 17:36:06 +0000 (11:36 -0600)]
Require gcc 4.9 and clang 4.0.

4 years agoUse American English spelling. 9805/head
Wolfgang Bangerth [Sat, 4 Apr 2020 17:03:26 +0000 (11:03 -0600)]
Use American English spelling.

4 years agoAlso update the .prm file.
Wolfgang Bangerth [Sat, 4 Apr 2020 17:03:07 +0000 (11:03 -0600)]
Also update the .prm file.


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