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https://gitweb.dealii.org/ - dealii-svn.git/log
bangerth [Mon, 7 Oct 2013 23:52:01 +0000 (23:52 +0000)]
No longer output the residual to output files.
git-svn-id: https://svn.dealii.org/trunk@31167
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bangerth [Mon, 7 Oct 2013 23:50:20 +0000 (23:50 +0000)]
Compute locally owned active set as intersection of two sets.
git-svn-id: https://svn.dealii.org/trunk@31166
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heister [Mon, 7 Oct 2013 21:55:54 +0000 (21:55 +0000)]
enhance SparseMatrix documentation
git-svn-id: https://svn.dealii.org/trunk@31165
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bangerth [Mon, 7 Oct 2013 14:51:55 +0000 (14:51 +0000)]
Minor adjustments.
git-svn-id: https://svn.dealii.org/trunk@31164
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bangerth [Mon, 7 Oct 2013 13:43:08 +0000 (13:43 +0000)]
Patch by Mayank Subharwal and Andreas Putz: Make GridIn read VTK files as well.
git-svn-id: https://svn.dealii.org/trunk@31163
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bangerth [Mon, 7 Oct 2013 13:28:39 +0000 (13:28 +0000)]
Search first for the file with its complete given name. I.e., if someone
searches for <mesh.vtk> with additional suffix <.vtk>, then still find the
file if it exists before trying <mesh.vtk.vtk>.
git-svn-id: https://svn.dealii.org/trunk@31162
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bangerth [Mon, 7 Oct 2013 03:42:41 +0000 (03:42 +0000)]
Rewrite in parts.
git-svn-id: https://svn.dealii.org/trunk@31161
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bangerth [Mon, 7 Oct 2013 03:08:28 +0000 (03:08 +0000)]
Remove extraneous space.
git-svn-id: https://svn.dealii.org/trunk@31160
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bangerth [Mon, 7 Oct 2013 02:54:40 +0000 (02:54 +0000)]
Link in step-42.
git-svn-id: https://svn.dealii.org/trunk@31159
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bangerth [Mon, 7 Oct 2013 02:42:34 +0000 (02:42 +0000)]
Update svn:ignore.
git-svn-id: https://svn.dealii.org/trunk@31158
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bangerth [Mon, 7 Oct 2013 02:35:51 +0000 (02:35 +0000)]
Finish documenting.
git-svn-id: https://svn.dealii.org/trunk@31157
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bangerth [Sun, 6 Oct 2013 21:03:56 +0000 (21:03 +0000)]
Comment on solve_newton().
git-svn-id: https://svn.dealii.org/trunk@31155
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maier [Sun, 6 Oct 2013 20:00:42 +0000 (20:00 +0000)]
Bugfix: Pick up the Fortran interface for lapack correctly
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31154
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maier [Sun, 6 Oct 2013 19:41:34 +0000 (19:41 +0000)]
Bugfix: build_tests should be recompiled if the underlying library changes...
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31153
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bangerth [Sun, 6 Oct 2013 18:21:36 +0000 (18:21 +0000)]
Fix a bug introduced in the previous version.
git-svn-id: https://svn.dealii.org/trunk@31152
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maier [Sat, 5 Oct 2013 22:37:33 +0000 (22:37 +0000)]
Some more documentation
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31151
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maier [Sat, 5 Oct 2013 17:25:48 +0000 (17:25 +0000)]
First part of documentation
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31150
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young [Sat, 5 Oct 2013 16:08:10 +0000 (16:08 +0000)]
Switch Assert to AssertThrow where a PETScInternalError can occur.
git-svn-id: https://svn.dealii.org/trunk@31149
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maier [Sat, 5 Oct 2013 15:03:16 +0000 (15:03 +0000)]
Doc: Update CMake documentation. Add a section about configuration and
building, reflect recent changes
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31148
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maier [Sat, 5 Oct 2013 13:01:10 +0000 (13:01 +0000)]
Doc: Rearrange two paragraphs
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31147
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maier [Sat, 5 Oct 2013 12:59:41 +0000 (12:59 +0000)]
Update readme on Windows support and minimal gcc version
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31146
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maier [Sat, 5 Oct 2013 12:32:43 +0000 (12:32 +0000)]
Merge trunk into branch_port_the_testsuite
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31145
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bangerth [Sat, 5 Oct 2013 12:17:40 +0000 (12:17 +0000)]
Move forward.
git-svn-id: https://svn.dealii.org/trunk@31144
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kanschat [Sat, 5 Oct 2013 11:48:41 +0000 (11:48 +0000)]
add Stephan's paper
git-svn-id: https://svn.dealii.org/trunk@31143
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maier [Sat, 5 Oct 2013 11:46:11 +0000 (11:46 +0000)]
Make clang happy
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31142
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bangerth [Sat, 5 Oct 2013 11:32:20 +0000 (11:32 +0000)]
Indent.
git-svn-id: https://svn.dealii.org/trunk@31141
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young [Sat, 5 Oct 2013 03:52:30 +0000 (03:52 +0000)]
Add a strangely missing AssertThrow.
git-svn-id: https://svn.dealii.org/trunk@31139
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maier [Sat, 5 Oct 2013 00:50:10 +0000 (00:50 +0000)]
Print a detailed info message
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31135
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bangerth [Fri, 4 Oct 2013 23:04:52 +0000 (23:04 +0000)]
Last changes for the day. Good progress :-)
git-svn-id: https://svn.dealii.org/trunk@31132
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bangerth [Fri, 4 Oct 2013 22:32:36 +0000 (22:32 +0000)]
More documentation.
git-svn-id: https://svn.dealii.org/trunk@31131
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bangerth [Fri, 4 Oct 2013 21:33:36 +0000 (21:33 +0000)]
More documentation.
git-svn-id: https://svn.dealii.org/trunk@31130
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maier [Fri, 4 Oct 2013 21:32:57 +0000 (21:32 +0000)]
Update TODO
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31129
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maier [Fri, 4 Oct 2013 21:30:23 +0000 (21:30 +0000)]
Only run these tests if functionparser is available
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31128
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maier [Fri, 4 Oct 2013 21:08:43 +0000 (21:08 +0000)]
Small Bugfixes and Cleanup
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31127
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maier [Fri, 4 Oct 2013 20:30:03 +0000 (20:30 +0000)]
Proper fix, some final rearrangement.
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31126
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bangerth [Fri, 4 Oct 2013 19:58:21 +0000 (19:58 +0000)]
Make run again in parallel.
git-svn-id: https://svn.dealii.org/trunk@31125
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bangerth [Fri, 4 Oct 2013 19:32:41 +0000 (19:32 +0000)]
Remove unused variables.
git-svn-id: https://svn.dealii.org/trunk@31124
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bangerth [Fri, 4 Oct 2013 18:37:12 +0000 (18:37 +0000)]
Undo 31119 and fix it by doing the same thing in debug and release mode.
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31123
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heister [Fri, 4 Oct 2013 18:23:40 +0000 (18:23 +0000)]
better way to fix release mode tests
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31122
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heister [Fri, 4 Oct 2013 18:21:34 +0000 (18:21 +0000)]
fix test in release mode
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31121
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heister [Fri, 4 Oct 2013 18:20:58 +0000 (18:20 +0000)]
fix test in release mode
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31120
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heister [Fri, 4 Oct 2013 18:05:29 +0000 (18:05 +0000)]
test has different output in release mode
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31119
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bangerth [Fri, 4 Oct 2013 13:05:10 +0000 (13:05 +0000)]
Some compilers apparently want to have a full declaration of ConstraintMatrix
if they see it in a default argument.
git-svn-id: https://svn.dealii.org/trunk@31118
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bangerth [Fri, 4 Oct 2013 13:03:44 +0000 (13:03 +0000)]
Qualify strcpy with std::
git-svn-id: https://svn.dealii.org/trunk@31117
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maier [Fri, 4 Oct 2013 07:47:41 +0000 (07:47 +0000)]
Quick fix
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31116
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kronbichler [Fri, 4 Oct 2013 07:29:31 +0000 (07:29 +0000)]
Improve exception messages
git-svn-id: https://svn.dealii.org/trunk@31115
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bangerth [Thu, 3 Oct 2013 23:52:35 +0000 (23:52 +0000)]
Work around a POSIX violation.
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31114
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maier [Thu, 3 Oct 2013 23:31:42 +0000 (23:31 +0000)]
Remove obsolete file
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31113
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maier [Thu, 3 Oct 2013 23:31:04 +0000 (23:31 +0000)]
Port new tests
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31112
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maier [Thu, 3 Oct 2013 23:31:02 +0000 (23:31 +0000)]
Merge trunk into branch_port_the_testsuite
Conflicts:
tests/deal.II/grid_tools_05.output
tests/deal.II/grid_tools_05/cmp/generic
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31111
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maier [Thu, 3 Oct 2013 23:19:13 +0000 (23:19 +0000)]
Bugfix
git-svn-id: https://svn.dealii.org/trunk@31110
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maier [Thu, 3 Oct 2013 23:17:06 +0000 (23:17 +0000)]
Bugfix: resolve issue 105
git-svn-id: https://svn.dealii.org/trunk@31109
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bangerth [Thu, 3 Oct 2013 23:13:32 +0000 (23:13 +0000)]
Clear buffer at the end of the program.
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31108
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maier [Thu, 3 Oct 2013 22:06:49 +0000 (22:06 +0000)]
Bugfix: Only include libparmetis to the link interface if its likely that it belongs to the metis library..
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31107
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maier [Thu, 3 Oct 2013 21:32:19 +0000 (21:32 +0000)]
Bugfix: Remove obsolete code
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31106
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bangerth [Thu, 3 Oct 2013 20:39:51 +0000 (20:39 +0000)]
Rename a few variables. Initialize vectors with vector sets and communicators, rather than other vectors, to make clear that the vector is not in fact copied, and to make it clearer what index set is being used.
git-svn-id: https://svn.dealii.org/trunk@31105
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bangerth [Thu, 3 Oct 2013 20:08:21 +0000 (20:08 +0000)]
Remove file accidentally added.
git-svn-id: https://svn.dealii.org/trunk@31104
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bangerth [Thu, 3 Oct 2013 20:07:55 +0000 (20:07 +0000)]
Remove one variable whose value is always equal to another.
git-svn-id: https://svn.dealii.org/trunk@31103
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bangerth [Thu, 3 Oct 2013 20:00:34 +0000 (20:00 +0000)]
Remove one variable whose value is always equal to another.
git-svn-id: https://svn.dealii.org/trunk@31102
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heister [Thu, 3 Oct 2013 19:19:28 +0000 (19:19 +0000)]
fix script
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31101
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bangerth [Thu, 3 Oct 2013 19:11:07 +0000 (19:11 +0000)]
Correct output for now higher precision.
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31100
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heister [Thu, 3 Oct 2013 18:02:44 +0000 (18:02 +0000)]
fix test: release mode does not sort indices for performance reasons
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31099
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heister [Thu, 3 Oct 2013 17:56:15 +0000 (17:56 +0000)]
change metis test output. probably due to newer metis version
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31098
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heister [Thu, 3 Oct 2013 17:52:06 +0000 (17:52 +0000)]
fix test
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31096
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young [Thu, 3 Oct 2013 17:47:32 +0000 (17:47 +0000)]
do a todo - use PetscReal where real_type is needed.
git-svn-id: https://svn.dealii.org/trunk@31095
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bangerth [Thu, 3 Oct 2013 17:11:10 +0000 (17:11 +0000)]
Some more tests whose outputs have changed.
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31094
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bangerth [Thu, 3 Oct 2013 16:15:43 +0000 (16:15 +0000)]
Commit output files that have mysteriously changed on the branch.
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31091
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bangerth [Thu, 3 Oct 2013 14:27:39 +0000 (14:27 +0000)]
Commit output files that have mysteriously changed on the branch.
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31088
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young [Thu, 3 Oct 2013 13:38:48 +0000 (13:38 +0000)]
Set default problem type for SLEPc - this should be the GNHEP.
git-svn-id: https://svn.dealii.org/trunk@31084
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heister [Thu, 3 Oct 2013 01:47:18 +0000 (01:47 +0000)]
grouping and repeat header
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31082
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heister [Thu, 3 Oct 2013 01:38:34 +0000 (01:38 +0000)]
add comment
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31081
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heister [Thu, 3 Oct 2013 01:36:20 +0000 (01:36 +0000)]
optional argument for makereport.py: branch name
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31080
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maier [Wed, 2 Oct 2013 22:09:47 +0000 (22:09 +0000)]
Remove obsolete directories
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31079
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heister [Wed, 2 Oct 2013 18:25:01 +0000 (18:25 +0000)]
add to changelog
git-svn-id: https://svn.dealii.org/trunk@31078
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heister [Wed, 2 Oct 2013 17:59:44 +0000 (17:59 +0000)]
do not use n_default_threads but n_threads()
git-svn-id: https://svn.dealii.org/trunk@31077
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heister [Wed, 2 Oct 2013 17:52:30 +0000 (17:52 +0000)]
replace n_default_threads by n_threads()
git-svn-id: https://svn.dealii.org/trunk@31076
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heister [Wed, 2 Oct 2013 17:51:27 +0000 (17:51 +0000)]
leave some comments and todos
git-svn-id: https://svn.dealii.org/trunk@31075
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heister [Wed, 2 Oct 2013 17:40:44 +0000 (17:40 +0000)]
do not use n_default_threads
git-svn-id: https://svn.dealii.org/trunk@31074
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heister [Wed, 2 Oct 2013 17:40:15 +0000 (17:40 +0000)]
introduce new n_threads(), deprecate n_default_threads
git-svn-id: https://svn.dealii.org/trunk@31073
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heister [Wed, 2 Oct 2013 17:35:40 +0000 (17:35 +0000)]
remove references to n_default_threads() in error_estimator.h that are ignored anyway.
git-svn-id: https://svn.dealii.org/trunk@31072
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heister [Wed, 2 Oct 2013 17:30:01 +0000 (17:30 +0000)]
only use TBB in workstream if we are allowed to use more than one thread
git-svn-id: https://svn.dealii.org/trunk@31071
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turcksin [Wed, 2 Oct 2013 17:00:47 +0000 (17:00 +0000)]
Now when WorkStream uses graph coloring and that there are not enough elements in a color, the elements are aggregated and copied serially.
git-svn-id: https://svn.dealii.org/trunk@31070
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bangerth [Wed, 2 Oct 2013 15:06:52 +0000 (15:06 +0000)]
Make it compile.
git-svn-id: https://svn.dealii.org/trunk@31069
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bangerth [Wed, 2 Oct 2013 15:03:54 +0000 (15:03 +0000)]
Slightly more documentation. Leave a few TODOs in the introduction.
git-svn-id: https://svn.dealii.org/trunk@31068
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maier [Wed, 2 Oct 2013 00:47:35 +0000 (00:47 +0000)]
Cherry-pick revisions 31065 and 31066 from branch_port_the_testsuite
git-svn-id: https://svn.dealii.org/trunk@31067
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maier [Wed, 2 Oct 2013 00:39:39 +0000 (00:39 +0000)]
Finally.
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31066
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maier [Wed, 2 Oct 2013 00:36:50 +0000 (00:36 +0000)]
Remove obosolete test, rename remaining ones, fix output
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31065
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maier [Tue, 1 Oct 2013 21:35:48 +0000 (21:35 +0000)]
Port the distributed periodicity test, add missing template instantiation
git-svn-id: https://svn.dealii.org/trunk@31064
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maier [Tue, 1 Oct 2013 21:35:47 +0000 (21:35 +0000)]
Port grid_tools_05.cc test to collect_periodic_faces
git-svn-id: https://svn.dealii.org/trunk@31063
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maier [Tue, 1 Oct 2013 21:33:33 +0000 (21:33 +0000)]
Port the distributed periodicity test, add missing template instantiation
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31062
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maier [Tue, 1 Oct 2013 20:43:14 +0000 (20:43 +0000)]
Port grid_tools_05.cc test to collect_periodic_faces
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31061
0785d39b -7218-0410-832d-
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bangerth [Tue, 1 Oct 2013 20:36:19 +0000 (20:36 +0000)]
Suppress warnings of the following kind:
..................
/.../deal.II/source/numerics/matrix_tools.cc(2088): warning #2536: type qualifiers are meaningless here
bool (*comp)(const typename SparseMatrix<number>::iterator::value_type p,
^
..................
Avoiding the 'const' here is not always completely possible in
template contexts, depending on whether 'value_type' already
has the 'const' in it or not.
git-svn-id: https://svn.dealii.org/trunk@31060
0785d39b -7218-0410-832d-
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bangerth [Tue, 1 Oct 2013 18:49:50 +0000 (18:49 +0000)]
Improve error message.
git-svn-id: https://svn.dealii.org/trunk@31059
0785d39b -7218-0410-832d-
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turcksin [Tue, 1 Oct 2013 17:12:43 +0000 (17:12 +0000)]
Fix a bug in graph coloring and add a test for it.
git-svn-id: https://svn.dealii.org/trunk@31058
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kronbichler [Tue, 1 Oct 2013 15:18:37 +0000 (15:18 +0000)]
Link in step-51 tutorial program.
git-svn-id: https://svn.dealii.org/trunk@31057
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maier [Tue, 1 Oct 2013 08:15:38 +0000 (08:15 +0000)]
Merge trunk into branch_port_the_testsuite
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31056
0785d39b -7218-0410-832d-
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bangerth [Tue, 1 Oct 2013 00:25:23 +0000 (00:25 +0000)]
Do some operations in parallel on tasks.
git-svn-id: https://svn.dealii.org/trunk@31055
0785d39b -7218-0410-832d-
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bangerth [Tue, 1 Oct 2013 00:24:55 +0000 (00:24 +0000)]
Work around an issue in a copy constructor we needed for C++11 compatibility and Intel's ICC.
git-svn-id: https://svn.dealii.org/trunk@31054
0785d39b -7218-0410-832d-
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maier [Mon, 30 Sep 2013 23:50:16 +0000 (23:50 +0000)]
Merge trunk into branch_port_the_testsuite
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31053
0785d39b -7218-0410-832d-
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maier [Mon, 30 Sep 2013 23:49:41 +0000 (23:49 +0000)]
Take over revisions 31045 - 31051 from branch_port_the_testsuite
Cleanup GridTools::collect_periodic_*:
- Remove GridTools::collect_periodic_face_pairs
- Unify interface for remaining GridTools::collect_periodic_faces
- Remove deprecated functions that aren't even released
- Bugfix: Instantiate collect_periodic_faces, this resolves a compilation
issue with icc
git-svn-id: https://svn.dealii.org/trunk@31052
0785d39b -7218-0410-832d-
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