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https://gitweb.dealii.org/ - dealii.git/log
Martin Kronbichler [Wed, 28 Jun 2023 17:56:52 +0000 (19:56 +0200)]
Add changelog
Martin Kronbichler [Wed, 28 Jun 2023 17:54:18 +0000 (19:54 +0200)]
Two new test cases
Daniel Arndt [Thu, 29 Jun 2023 14:03:53 +0000 (10:03 -0400)]
Remove deprecated CellDataTransferBuffer
Matthias Maier [Thu, 29 Jun 2023 16:41:53 +0000 (11:41 -0500)]
CMake: remove unnecessary statement from ctest_start()
Matthias Maier [Thu, 29 Jun 2023 16:35:21 +0000 (11:35 -0500)]
CMake: fix submit_results.cmake
Nowadays, we need to set CTEST_SITE before we can submit an already
existing test result.
Wolfgang Bangerth [Wed, 21 Jun 2023 15:40:39 +0000 (09:40 -0600)]
Do not remove duplicates before inserting index set elements.
Wolfgang Bangerth [Thu, 22 Jun 2023 17:05:52 +0000 (11:05 -0600)]
Simplify some code that uses SolutionTransfer.
Matthias Maier [Thu, 29 Jun 2023 13:43:04 +0000 (08:43 -0500)]
Test: mpi/locally_owned_dofs_per_subdomain_02: do not compare output
The parallel partition that we compared in this test depends on metis,
and thus shows different (but valid) output depending on machine,
and chosen optimization level. Let us restrict this test to run only and
not compare the output.
Martin Kronbichler [Wed, 28 Jun 2023 17:53:57 +0000 (19:53 +0200)]
Fix the two-level transfer without MPI
Martin Kronbichler [Wed, 28 Jun 2023 21:39:09 +0000 (23:39 +0200)]
Merge pull request #15416 from bangerth/lambda
Rename a lambda function and make it easier to read.
Martin Kronbichler [Wed, 28 Jun 2023 17:46:18 +0000 (19:46 +0200)]
Move job_supports_mpi() to a more central place
Martin Kronbichler [Wed, 28 Jun 2023 18:11:07 +0000 (20:11 +0200)]
Merge pull request #15402 from bangerth/add-indices
Optimize IndexSet::add_indices() for the case of duplicate indices.
Martin Kronbichler [Wed, 28 Jun 2023 18:10:49 +0000 (20:10 +0200)]
Merge pull request #15418 from bangerth/sorted
When we know that sparsity pattern entries are sorted, communicate that.
Martin Kronbichler [Wed, 28 Jun 2023 18:10:21 +0000 (20:10 +0200)]
Merge pull request #15417 from bangerth/erase
Standardize on the idiom of calling std::erase after std::unique.
Martin Kronbichler [Wed, 28 Jun 2023 18:09:54 +0000 (20:09 +0200)]
Merge pull request #15443 from bangerth/assert
Add an assertion.
Martin Kronbichler [Wed, 28 Jun 2023 18:06:23 +0000 (20:06 +0200)]
Merge pull request #15513 from masterleinad/fix_cuda_tests
Fix output for matrix_free/matrix_free_device_initialize_vector with CUDA support
Martin Kronbichler [Wed, 28 Jun 2023 17:46:51 +0000 (19:46 +0200)]
Merge pull request #15420 from bangerth/67
Add a version of step-67 that uses PETSc TS time stepping.
Matthias Maier [Wed, 28 Jun 2023 16:13:15 +0000 (16:13 +0000)]
Merge pull request #15509 from tamiko/fp_exception_behavior_strict
CMake: enable -ffp-exceptions-behavior=strict when compiling with clang
Matthias Maier [Wed, 28 Jun 2023 16:13:07 +0000 (16:13 +0000)]
Merge pull request #15508 from tamiko/update_version_dependencies
Post release branch: require the current version of deal.II
Matthias Maier [Wed, 28 Jun 2023 16:12:57 +0000 (16:12 +0000)]
Merge pull request #15507 from tamiko/update_deprecations
Post release branch: switch DEAL_II_DEPRECATED_EARLY over to DEAL_II_DEPRECATED
Matthias Maier [Wed, 28 Jun 2023 16:12:47 +0000 (16:12 +0000)]
Merge pull request #15505 from tamiko/update_version
Post release branch: update VERSION on main branch
Daniel Arndt [Wed, 28 Jun 2023 15:48:47 +0000 (15:48 +0000)]
Fix output for matrix_free/matrix_free_device_initialize_vector with CUDA support
Marc Fehling [Sat, 17 Dec 2022 04:31:32 +0000 (21:31 -0700)]
Remove deprecated LegacySignal.
Matthias Maier [Tue, 27 Jun 2023 20:46:20 +0000 (15:46 -0500)]
CMake: enable -ffp-exceptions-behavior=strict when compiling with clang
We have to ensure that we emit floating-point instructions in debug mode
that preserve the occurence of floating-point exceptions and don't
introduce new ones. gcc plays nicely in this regard by enabling
`-ftrapping-math` per default, at least for the level of optimization we
have in debug mode. clang however is more aggressive and assumes that it
can optimize code disregarding precise floating-point exception
semantics.
We thus set `-ffp-exceptions-behavior=strict` in debug mode to ensure
that our testsuite doesn't run into false positive floating-point
exceptions. See https://github.com/dealii/dealii/issues/15496
Matthias Maier [Tue, 27 Jun 2023 17:13:23 +0000 (12:13 -0500)]
update version dependencies in documentation
Matthias Maier [Tue, 27 Jun 2023 17:12:43 +0000 (12:12 -0500)]
update version dependencies in examples
Matthias Maier [Tue, 27 Jun 2023 17:08:13 +0000 (12:08 -0500)]
reindent
Matthias Maier [Tue, 27 Jun 2023 17:07:34 +0000 (12:07 -0500)]
switch DEAL_II_DEPRECATED_EARLY over to DEAL_II_DEPRECATED
Matthias Maier [Tue, 27 Jun 2023 16:43:01 +0000 (11:43 -0500)]
update VERSION
Matthias Maier [Tue, 27 Jun 2023 16:39:22 +0000 (16:39 +0000)]
Merge pull request #15503 from tamiko/update-changes-file
Update the changelog file for the release.
Matthias Maier [Tue, 27 Jun 2023 16:12:23 +0000 (11:12 -0500)]
fix whitespace
Matthias Maier [Tue, 27 Jun 2023 15:57:50 +0000 (10:57 -0500)]
doc: fix typos and use <code> annotation in two places
Matthias Maier [Tue, 27 Jun 2023 15:50:02 +0000 (10:50 -0500)]
doc: use https:// instead of http://
Matthias Maier [Tue, 27 Jun 2023 15:49:51 +0000 (10:49 -0500)]
doc: update tag file list
Matthias Maier [Tue, 27 Jun 2023 15:47:58 +0000 (10:47 -0500)]
Add dummy files.
Matthias Maier [Tue, 27 Jun 2023 15:45:55 +0000 (10:45 -0500)]
Remove now obsolete files.
Matthias Maier [Tue, 27 Jun 2023 15:45:01 +0000 (10:45 -0500)]
Add a misplaced entry
Matthias Maier [Tue, 27 Jun 2023 15:42:35 +0000 (10:42 -0500)]
Update the changelog file for the release.
Matthias Maier [Tue, 27 Jun 2023 14:43:25 +0000 (14:43 +0000)]
Merge pull request #15499 from tamiko/bind_to_none
CMake: run_test.sh: ensure to never bind to cores/processors for mpi tests
Matthias Maier [Tue, 27 Jun 2023 14:42:32 +0000 (14:42 +0000)]
Merge pull request #15502 from masterleinad/fix_compiling_clang_16_new
Fix compiling with clang-16 and C++20
Matthias Maier [Tue, 27 Jun 2023 14:22:08 +0000 (09:22 -0500)]
CMake: run_test.sh: also try to suppress kokkos warnings
Matthias Maier [Tue, 27 Jun 2023 01:41:33 +0000 (20:41 -0500)]
CMake: run_test.sh: ensure to never bind to cores/processors for mpi tests
Daniel Arndt [Tue, 27 Jun 2023 12:43:05 +0000 (08:43 -0400)]
Fix compiling with clang-16
Martin Kronbichler [Tue, 27 Jun 2023 12:03:02 +0000 (14:03 +0200)]
Merge pull request #15500 from tamiko/redemption
Tests: exonerate two debug test variants and run them again
Matthias Maier [Tue, 27 Jun 2023 02:38:35 +0000 (21:38 -0500)]
Revert "Test distributed_grids/checkpointing_03: do not run debug variant"
This reverts commit
6b92cdabc142c6b1fc82c16cf7a2cfbe996cd644 .
Matthias Maier [Tue, 27 Jun 2023 02:34:01 +0000 (21:34 -0500)]
Revert "Test fe/fe_enriched_color_07: do not run debug variant"
This reverts commit
56dd9b490b4e15468969ff4856758ccedb107120 .
Matthias Maier [Tue, 27 Jun 2023 02:04:55 +0000 (02:04 +0000)]
Merge pull request #15498 from tamiko/update_mailmap
Update .mailmap: a quick update to fix some spelling e-mail setting mistakes
Matthias Maier [Tue, 27 Jun 2023 00:01:59 +0000 (19:01 -0500)]
Update .mailmap: a quick update to fix some spelling e-mail setting mistakes
Marc Fehling [Mon, 26 Jun 2023 21:42:30 +0000 (15:42 -0600)]
Merge pull request #15493 from tamiko/fix_test_20
Test non_matching/step-70: add an output variant
Matthias Maier [Mon, 26 Jun 2023 21:35:12 +0000 (21:35 +0000)]
Merge pull request #15494 from masterleinad/require_arborx_1_3
Require ArborX 1.3 or later
Matthias Maier [Mon, 26 Jun 2023 21:34:53 +0000 (21:34 +0000)]
Merge pull request #15492 from bangerth/task
Ensure we set a flag correctly even if a task ends in an exception.
Matthias Maier [Mon, 26 Jun 2023 20:24:25 +0000 (20:24 +0000)]
Merge pull request #15497 from tamiko/bob/fix_test_21
Test simplex/compute_point_locations_01: add output variant
Matthias Maier [Mon, 26 Jun 2023 20:23:25 +0000 (20:23 +0000)]
Merge pull request #15491 from tamiko/fix_test_18
Test numerics/nonlinear_solver_selector_03: add ouput variant
Matthias Maier [Mon, 26 Jun 2023 19:46:28 +0000 (14:46 -0500)]
Test simplex/compute_point_locations_01: add output variant
With clang-16 libc++ we get a different order of quadrature points.
Verified manually that - apart from the order - all output quadrature
points match.
Daniel Arndt [Mon, 26 Jun 2023 19:04:24 +0000 (15:04 -0400)]
Require ArborX 1.3 or later
Matthias Maier [Mon, 26 Jun 2023 19:07:17 +0000 (14:07 -0500)]
Test non_matching/step-70: add an output variant
Add an output variant for the case when deal.II is configured with PETSc
support but without Trilinos support.
Wolfgang Bangerth [Mon, 26 Jun 2023 19:06:34 +0000 (13:06 -0600)]
Add a changelog entry.
Wolfgang Bangerth [Mon, 26 Jun 2023 19:03:10 +0000 (13:03 -0600)]
Ensure we set a flag correctly even if a task ends in an exception.
Matthias Maier [Mon, 26 Jun 2023 18:54:03 +0000 (13:54 -0500)]
Test numerics/nonlinear_solver_selector_03: add ouput variant
Add an output variant for the case when deal.II is configured with PETSc
support but without Trilinos support.
Matthias Maier [Mon, 26 Jun 2023 17:56:45 +0000 (17:56 +0000)]
Merge pull request #15488 from tamiko/fix_test_17
Test: cgal/cgal_intersect_simplices_2d_3d: restrict to CGAL >= 5.5.0
Wolfgang Bangerth [Mon, 26 Jun 2023 17:54:08 +0000 (11:54 -0600)]
Merge pull request #15487 from tamiko/fix_test_16
Test mpi/p4est_bug_01: remove test
Wolfgang Bangerth [Mon, 26 Jun 2023 17:49:59 +0000 (11:49 -0600)]
Catch exceptions as const-reference when possible.
Matthias Maier [Mon, 26 Jun 2023 15:09:53 +0000 (10:09 -0500)]
Test: cgal/cgal_intersect_simplices_2d_3d: restrict to CGAL >= 5.5.0
Matthias Maier [Mon, 26 Jun 2023 15:00:03 +0000 (10:00 -0500)]
Test mpi/p4est_bug_01: remove test
This test needs an external p4est library built with debug symbols,
otherwise it "fails" because we do not error out while running the test
"expect=run".
Let's remove this test for now.
The long standing bug it documents is reported in
https://github.com/dealii/dealii/issues/7428
See also
https://github.com/dealii/dealii/issues/9047
Matthias Maier [Mon, 26 Jun 2023 14:49:22 +0000 (14:49 +0000)]
Merge pull request #15486 from kronbichler/test_robustness2
MatrixFree inverse mass matrix: Make tests more robust
David Wells [Mon, 26 Jun 2023 14:14:40 +0000 (10:14 -0400)]
Merge pull request #15485 from kronbichler/output_variants
Add two output variants for tests writing p4est vtk output
Martin Kronbichler [Mon, 26 Jun 2023 11:25:42 +0000 (13:25 +0200)]
Make tests more robust
Martin Kronbichler [Mon, 26 Jun 2023 08:26:03 +0000 (10:26 +0200)]
Add two output variants for tests writing p4est vtk output
Matthias Maier [Sun, 25 Jun 2023 21:55:54 +0000 (21:55 +0000)]
Merge pull request #15481 from tjhei/kinsol-warning
fix kinsol unused lambda capture warning
Matthias Maier [Sun, 25 Jun 2023 21:55:42 +0000 (21:55 +0000)]
Merge pull request #15482 from tjhei/unused-var
fix unused variable warning
Timo Heister [Sun, 25 Jun 2023 18:43:43 +0000 (14:43 -0400)]
fix kinsol unused lambda capture warning
Timo Heister [Sun, 25 Jun 2023 18:45:05 +0000 (14:45 -0400)]
fix unused variable warning
Matthias Maier [Sun, 25 Jun 2023 07:07:34 +0000 (07:07 +0000)]
Merge pull request #15474 from luca-heltai/stefanozampini/fp-trap
Fixes for FPE and older versions of PETSc
Matthias Maier [Sun, 25 Jun 2023 07:04:55 +0000 (07:04 +0000)]
Merge pull request #15477 from tamiko/fix_test_15
Test fe/fe_enriched_color_07: do not run debug variant
Matthias Maier [Sun, 25 Jun 2023 05:44:13 +0000 (05:44 +0000)]
Merge pull request #15475 from tamiko/restrict_scalapack_test_variants
Test scalapack/*: restrict all scalapack tests to less than 10 mpi ranks
Matthias Maier [Sun, 25 Jun 2023 04:00:29 +0000 (04:00 +0000)]
Merge pull request #15473 from tamiko/fix_test_14
Test mpi/trilinos_step-27: add output variant
Matthias Maier [Sun, 25 Jun 2023 04:00:14 +0000 (04:00 +0000)]
Merge pull request #15472 from tamiko/fix_test_13
Test distributed_grids/checkpointing_03: do not run debug variant
Matthias Maier [Sun, 25 Jun 2023 03:16:18 +0000 (03:16 +0000)]
Merge pull request #15465 from bangerth/kokkos
Filter out --help from argv when initializing Kokkos
Matthias Maier [Sun, 25 Jun 2023 03:14:49 +0000 (03:14 +0000)]
Merge pull request #15471 from tamiko/fix_la_test_02
Test lac/vector_memory_02: add output variant
Matthias Maier [Sun, 25 Jun 2023 03:10:53 +0000 (03:10 +0000)]
Merge pull request #15470 from tamiko/fix_la_test
Test: lac/linear_operator_10: disable floating point exceptions
Matthias Maier [Sun, 25 Jun 2023 03:10:31 +0000 (03:10 +0000)]
Merge pull request #15469 from tamiko/fix_grid_tools_cache_tests
Test grid/grid_tools_cache_{04,06,08,09}: add output variants
Matthias Maier [Sun, 25 Jun 2023 03:10:00 +0000 (03:10 +0000)]
Merge pull request #15468 from tamiko/fix_test_12
Test grid/grid_generator_pipe_junction: add output variant
Matthias Maier [Sun, 25 Jun 2023 03:09:35 +0000 (03:09 +0000)]
Merge pull request #15467 from tamiko/fix_cgal_test_02
Test cgal/cgal_triangulation_05: add test variant for clang-16, libc++
Matthias Maier [Sun, 25 Jun 2023 03:09:16 +0000 (03:09 +0000)]
Merge pull request #15466 from tamiko/fix_cgal_test
Test cgal/cgal_remesh_surface: disable floating point exceptions
Matthias Maier [Sun, 25 Jun 2023 02:36:31 +0000 (21:36 -0500)]
Test fe/fe_enriched_color_07: do not run debug variant
This test is massive (a whopping 2000 lines of code) and regularly times
out on different regression tester variants. Let's restrict it to run in
release mode only.
Matthias Maier [Sun, 25 Jun 2023 00:54:50 +0000 (19:54 -0500)]
Test scalapack/*: restrict all scalapack tests to less than 10 mpi ranks
Let us restrict the maximal concurrency of scalapack tests to less than
10 MPI ranks:
- The purpose of these tests is to test our interfaces to scalapack and
not whether scalapack functions properly for high(er) MPI
concurrency. As such testing a few variants with a low number of MPI
ranks is enough.
- This cuts down the number of tests in our testsuite that have a
concurrency of 10 or more from around 225 to around 190.
The issue with these tests is the fact that we have to block off
parallel slots in the ctest run equal to the number of MPI ranks.
Meaning the more tests we have that have a high number of MPI ranks
the less optimal the scheduling in ctest.
Matthias Maier [Sun, 25 Jun 2023 00:21:35 +0000 (19:21 -0500)]
Test mpi/trilinos_step-27: add output variant
With clang and libc++ I get a slightly different adaptive refinement.
Thus add an output variant.
Stefano Zampini [Sun, 25 Jun 2023 00:14:15 +0000 (03:14 +0300)]
Disable FPE trapping in some tests with older versions of PETSc
Matthias Maier [Sun, 25 Jun 2023 00:10:55 +0000 (19:10 -0500)]
Test distributed_grids/checkpointing_03: do not run debug variant
With gcc-13 in debug mode this test can takeup to 10 minutes to
complete. Thus, restict it to release mode where it only takes a couple
of seconds.
Matthias Maier [Sun, 25 Jun 2023 00:02:19 +0000 (19:02 -0500)]
Test lac/vector_memory_02: add output variant
Stefano Zampini [Sat, 24 Jun 2023 23:52:22 +0000 (02:52 +0300)]
Fix warning
catching polymorphic type ‘class dealii::StandardExceptions::ExcFunctionNotProvided’ by value [-Wcatch-value=]
Stefano Zampini [Sat, 24 Jun 2023 22:38:12 +0000 (00:38 +0200)]
alternative outputs for MACOSX
Stefano Zampini [Sat, 24 Jun 2023 22:15:26 +0000 (00:15 +0200)]
Some versions of PETSc do not apply Shift if zero!
Matthias Maier [Sat, 24 Jun 2023 23:56:34 +0000 (18:56 -0500)]
Test: lac/linear_operator_10: disable floating point exceptions
Matthias Maier [Sat, 24 Jun 2023 23:44:07 +0000 (18:44 -0500)]
Test grid/grid_tools_cache_09: add output variants
Matthias Maier [Sat, 24 Jun 2023 23:37:08 +0000 (18:37 -0500)]
Test grid/grid_tools_cache_08: add output variant
Matthias Maier [Sat, 24 Jun 2023 23:03:00 +0000 (18:03 -0500)]
Test cgal/cgal_remesh_surface: disable floating point exceptions
Matthias Maier [Sat, 24 Jun 2023 23:33:52 +0000 (18:33 -0500)]
Test grid/grid_tools_cache_06: add output variant
Matthias Maier [Sat, 24 Jun 2023 23:31:13 +0000 (18:31 -0500)]
Test grid/grid_tools_cache_04: add output variant
Matthias Maier [Sat, 24 Jun 2023 23:20:40 +0000 (18:20 -0500)]
Test grid/grid_generator_pipe_junction: add output variant
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