From 50b4adadc514415e7826e3753d334c90bddfa642 Mon Sep 17 00:00:00 2001 From: heltai Date: Mon, 10 Feb 2014 13:21:33 +0000 Subject: [PATCH] Merged from trunk r32366 through r32443. git-svn-id: https://svn.dealii.org/branches/branch_manifold_id@32444 0785d39b-7218-0410-832d-ea1e28bc413d --- deal.II/CMakeLists.txt | 1 + deal.II/bundled/CMakeLists.txt | 8 - .../libs/iostreams/src/CMakeLists.txt | 2 + .../libs/serialization/src/CMakeLists.txt | 2 + .../libs/thread/src/CMakeLists.txt | 2 + .../tbb41_20130401oss/src/CMakeLists.txt | 1 + .../bundled/umfpack/AMD/Source/CMakeLists.txt | 2 + .../umfpack/UMFPACK/Source/CMakeLists.txt | 3 + .../checks/check_02_system_features.cmake | 10 +- deal.II/cmake/config/CMakeLists.txt | 25 +- .../cmake/configure/configure_1_bzip2.cmake | 3 +- .../cmake/configure/configure_1_lapack.cmake | 3 +- deal.II/cmake/configure/configure_1_mpi.cmake | 25 +- .../cmake/configure/configure_1_threads.cmake | 52 +- .../cmake/configure/configure_2_metis.cmake | 2 +- .../configure/configure_2_trilinos.cmake | 15 +- .../cmake/configure/configure_2_umfpack.cmake | 4 +- .../cmake/configure/configure_3_petsc.cmake | 8 +- deal.II/cmake/configure/configure_boost.cmake | 15 +- .../configure/configure_functionparser.cmake | 4 +- deal.II/cmake/configure/configure_hdf5.cmake | 10 +- deal.II/cmake/configure/configure_mumps.cmake | 9 +- deal.II/cmake/configure/configure_p4est.cmake | 9 +- deal.II/cmake/configure/configure_slepc.cmake | 13 +- .../macros/macro_configure_feature.cmake | 7 +- .../macros/macro_deal_ii_add_library.cmake | 2 +- .../macro_filter_system_libraries.cmake | 43 + .../macros/macro_find_system_library.cmake | 50 + .../cmake/macros/macro_register_feature.cmake | 64 +- deal.II/cmake/modules/FindDEALII_LAPACK.cmake | 28 +- deal.II/cmake/modules/FindPETSC.cmake | 31 +- deal.II/cmake/modules/FindTRILINOS.cmake | 8 +- deal.II/cmake/modules/FindUMFPACK.cmake | 22 +- deal.II/cmake/setup_compiler_flags.cmake | 6 +- deal.II/cmake/setup_finalize.cmake | 55 +- deal.II/cmake/setup_sanity_checks.cmake | 72 + deal.II/cmake/setup_write_config.cmake | 127 +- deal.II/doc/developers/cmake-internals.html | 100 +- deal.II/doc/doxygen/headers/glossary.h | 2 +- deal.II/doc/news/changes.h | 78 +- deal.II/doc/publications/index.html | 13 +- deal.II/examples/step-13/step-13.cc | 27 +- deal.II/examples/step-14/step-14.cc | 6 +- deal.II/examples/step-2/doc/intro.dox | 2 +- deal.II/examples/step-6/step-6.cc | 2 +- .../deal.II/algorithms/newton.templates.h | 12 +- deal.II/include/deal.II/base/data_out_base.h | 495 +- deal.II/include/deal.II/base/function.h | 4 +- .../include/deal.II/base/function_parser.h | 2 +- deal.II/include/deal.II/base/smartpointer.h | 12 +- .../deal.II/base/thread_local_storage.h | 59 +- deal.II/include/deal.II/dofs/dof_accessor.h | 20 +- .../deal.II/dofs/dof_accessor.templates.h | 512 +- deal.II/include/deal.II/grid/grid_generator.h | 5 +- deal.II/include/deal.II/grid/grid_tools.h | 88 +- deal.II/include/deal.II/integrators/l2.h | 42 + .../include/deal.II/lac/constraint_matrix.h | 2 +- deal.II/include/deal.II/lac/full_matrix.h | 903 +- .../deal.II/lac/full_matrix.templates.h | 3 +- .../include/deal.II/lac/lapack_full_matrix.h | 717 +- deal.II/include/deal.II/lac/matrix_block.h | 22 +- .../deal.II/matrix_free/fe_evaluation.h | 15 +- .../deal.II/matrix_free/mapping_info.h | 10 +- .../matrix_free/mapping_info.templates.h | 14 +- .../include/deal.II/multigrid/mg_transfer.h | 15 +- deal.II/include/deal.II/numerics/data_out.h | 9 +- .../include/deal.II/numerics/data_out_faces.h | 31 +- .../deal.II/numerics/data_out_rotation.h | 27 +- .../numerics/derivative_approximation.h | 320 +- .../deal.II/numerics/vector_tools.templates.h | 11 +- deal.II/source/CMakeLists.txt | 12 +- deal.II/source/base/data_out_base.cc | 8514 +++++++++-------- deal.II/source/base/data_out_base.inst.in | 34 +- deal.II/source/base/mpi.cc | 16 +- deal.II/source/base/quadrature_lib.cc | 6 +- deal.II/source/fe/fe_values.cc | 41 +- deal.II/source/grid/grid_generator.cc | 6 +- deal.II/source/grid/grid_tools.cc | 4 + deal.II/source/grid/grid_tools.inst.in | 12 +- deal.II/source/hp/dof_handler.cc | 45 +- deal.II/source/lac/lapack_full_matrix.cc | 383 +- deal.II/source/lac/petsc_full_matrix.cc | 11 +- .../source/multigrid/mg_transfer_prebuilt.cc | 26 + deal.II/source/numerics/data_out_faces.cc | 57 +- deal.II/source/numerics/data_out_rotation.cc | 54 +- .../numerics/derivative_approximation.cc | 1709 ++-- .../numerics/derivative_approximation.inst.in | 36 +- deal.II/source/numerics/error_estimator.cc | 10 +- deal.II/tests/quick_tests/CMakeLists.txt | 11 +- deal.II/tests/quick_tests/affinity.cc | 56 +- deal.II/tests/quick_tests/tbb.cc | 16 +- tests/base/function_parser_03.cc | 59 + ..._parser_03.with_functionparser=true.output | 1 + tests/base/function_parser_04.cc | 100 + ...nctionparser=true.with_threads=true.output | 1 + tests/base/functions_04.cc | 9 +- tests/base/functions_singularity.cc | 7 +- tests/base/thread_local_storage_05.cc | 109 + ...ad_local_storage_05.with_threads=on.output | 2 + tests/base/thread_local_storage_06.cc | 120 + ...ad_local_storage_06.with_threads=on.output | 2 + tests/bits/step-13.cc | 10 +- tests/bits/step-14.cc | 6 +- tests/deal.II/fe_values_view_28.cc | 2 +- tests/deal.II/fe_values_view_28.output | 35 +- tests/deal.II/fe_values_view_29.cc | 146 + tests/deal.II/fe_values_view_29.output | 28 + tests/deal.II/grid_tools_transform_01.cc | 88 + tests/deal.II/grid_tools_transform_01.output | 825 ++ tests/hp/step-13.cc | 10 +- tests/lapack/full_matrix_08.cc | 68 + tests/lapack/full_matrix_08.output | 2 + tests/lapack/full_matrix_09.cc | 68 + tests/lapack/full_matrix_09.output | 2 + tests/lapack/full_matrix_10.cc | 68 + tests/lapack/full_matrix_10.output | 2 + tests/lapack/full_matrix_11.cc | 68 + tests/lapack/full_matrix_11.output | 2 + tests/lapack/full_matrix_12.cc | 71 + tests/lapack/full_matrix_12.output | 2 + tests/petsc/full_matrix_00.cc | 122 + tests/petsc/full_matrix_00.output | 14 + 122 files changed, 9833 insertions(+), 7598 deletions(-) create mode 100644 deal.II/cmake/macros/macro_filter_system_libraries.cmake create mode 100644 deal.II/cmake/macros/macro_find_system_library.cmake create mode 100644 deal.II/cmake/setup_sanity_checks.cmake create mode 100644 tests/base/function_parser_03.cc create mode 100644 tests/base/function_parser_03.with_functionparser=true.output create mode 100644 tests/base/function_parser_04.cc create mode 100644 tests/base/function_parser_04.with_functionparser=true.with_threads=true.output create mode 100644 tests/base/thread_local_storage_05.cc create mode 100644 tests/base/thread_local_storage_05.with_threads=on.output create mode 100644 tests/base/thread_local_storage_06.cc create mode 100644 tests/base/thread_local_storage_06.with_threads=on.output create mode 100644 tests/deal.II/fe_values_view_29.cc create mode 100644 tests/deal.II/fe_values_view_29.output create mode 100644 tests/deal.II/grid_tools_transform_01.cc create mode 100644 tests/deal.II/grid_tools_transform_01.output create mode 100644 tests/lapack/full_matrix_08.cc create mode 100644 tests/lapack/full_matrix_08.output create mode 100644 tests/lapack/full_matrix_09.cc create mode 100644 tests/lapack/full_matrix_09.output create mode 100644 tests/lapack/full_matrix_10.cc create mode 100644 tests/lapack/full_matrix_10.output create mode 100644 tests/lapack/full_matrix_11.cc create mode 100644 tests/lapack/full_matrix_11.output create mode 100644 tests/lapack/full_matrix_12.cc create mode 100644 tests/lapack/full_matrix_12.output create mode 100644 tests/petsc/full_matrix_00.cc create mode 100644 tests/petsc/full_matrix_00.output diff --git a/deal.II/CMakeLists.txt b/deal.II/CMakeLists.txt index ad2a8cacd4..3b5c724258 100644 --- a/deal.II/CMakeLists.txt +++ b/deal.II/CMakeLists.txt @@ -124,6 +124,7 @@ ENDFOREACH() INCLUDE(setup_custom_targets) INCLUDE(setup_finalize) INCLUDE(setup_write_config) +#INCLUDE(setup_sanity_checks) ######################################################################## diff --git a/deal.II/bundled/CMakeLists.txt b/deal.II/bundled/CMakeLists.txt index b4ff8c8bf6..68855752cc 100644 --- a/deal.II/bundled/CMakeLists.txt +++ b/deal.II/bundled/CMakeLists.txt @@ -28,10 +28,6 @@ IF(FEATURE_BOOST_BUNDLED_CONFIGURED) PATTERN ".svn" EXCLUDE ) - FILE(APPEND ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/deal_ii_source_includes - "${BOOST_FOLDER}/include\n" - ) - ADD_SUBDIRECTORY(${BOOST_FOLDER}/libs/serialization/src) IF(DEAL_II_WITH_ZLIB) @@ -59,10 +55,6 @@ IF(FEATURE_THREADS_BUNDLED_CONFIGURED) PATTERN ".svn" EXCLUDE ) - FILE(APPEND ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/deal_ii_source_includes - "${TBB_FOLDER}/include\n" - ) - ADD_SUBDIRECTORY(${TBB_FOLDER}/src) ENDIF() diff --git a/deal.II/bundled/boost-1.49.0/libs/iostreams/src/CMakeLists.txt b/deal.II/bundled/boost-1.49.0/libs/iostreams/src/CMakeLists.txt index ef8f84838c..0e7daafd8f 100644 --- a/deal.II/bundled/boost-1.49.0/libs/iostreams/src/CMakeLists.txt +++ b/deal.II/bundled/boost-1.49.0/libs/iostreams/src/CMakeLists.txt @@ -14,6 +14,8 @@ ## ## --------------------------------------------------------------------- +INCLUDE_DIRECTORIES(${BOOST_BUNDLED_INCLUDE_DIRS}) + SET(src_boost_iostreams file_descriptor.cpp gzip.cpp diff --git a/deal.II/bundled/boost-1.49.0/libs/serialization/src/CMakeLists.txt b/deal.II/bundled/boost-1.49.0/libs/serialization/src/CMakeLists.txt index b06ba8bd6e..4f35a0e7de 100644 --- a/deal.II/bundled/boost-1.49.0/libs/serialization/src/CMakeLists.txt +++ b/deal.II/bundled/boost-1.49.0/libs/serialization/src/CMakeLists.txt @@ -14,6 +14,8 @@ ## ## --------------------------------------------------------------------- +INCLUDE_DIRECTORIES(${BOOST_BUNDLED_INCLUDE_DIRS}) + SET(src_boost_serialization basic_archive.cpp basic_iarchive.cpp diff --git a/deal.II/bundled/boost-1.49.0/libs/thread/src/CMakeLists.txt b/deal.II/bundled/boost-1.49.0/libs/thread/src/CMakeLists.txt index 2e3eb8839f..c1229bb8a9 100644 --- a/deal.II/bundled/boost-1.49.0/libs/thread/src/CMakeLists.txt +++ b/deal.II/bundled/boost-1.49.0/libs/thread/src/CMakeLists.txt @@ -14,6 +14,8 @@ ## ## --------------------------------------------------------------------- +INCLUDE_DIRECTORIES(${BOOST_BUNDLED_INCLUDE_DIRS}) + IF(DEAL_II_USE_MT_POSIX) SET(src_boost_thread pthread/once.cpp diff --git a/deal.II/bundled/tbb41_20130401oss/src/CMakeLists.txt b/deal.II/bundled/tbb41_20130401oss/src/CMakeLists.txt index 8e764b44f3..fa9b0faa97 100644 --- a/deal.II/bundled/tbb41_20130401oss/src/CMakeLists.txt +++ b/deal.II/bundled/tbb41_20130401oss/src/CMakeLists.txt @@ -23,6 +23,7 @@ STRIP_FLAG(DEAL_II_CXX_FLAGS "-pedantic") SET(CMAKE_INCLUDE_CURRENT_DIR TRUE) INCLUDE_DIRECTORIES( + ${THREADS_BUNDLED_INCLUDE_DIRS} ${CMAKE_CURRENT_SOURCE_DIR}/rml/include ) diff --git a/deal.II/bundled/umfpack/AMD/Source/CMakeLists.txt b/deal.II/bundled/umfpack/AMD/Source/CMakeLists.txt index 5f3231de01..df569bf230 100644 --- a/deal.II/bundled/umfpack/AMD/Source/CMakeLists.txt +++ b/deal.II/bundled/umfpack/AMD/Source/CMakeLists.txt @@ -14,6 +14,8 @@ ## ## --------------------------------------------------------------------- +INCLUDE_DIRECTORIES(${UMFPACK_BUNDLED_INCLUDE_DIRS}) + SET(src_amd amd_1.cc amd_2.cc diff --git a/deal.II/bundled/umfpack/UMFPACK/Source/CMakeLists.txt b/deal.II/bundled/umfpack/UMFPACK/Source/CMakeLists.txt index 16f03377d4..5029fc65f7 100644 --- a/deal.II/bundled/umfpack/UMFPACK/Source/CMakeLists.txt +++ b/deal.II/bundled/umfpack/UMFPACK/Source/CMakeLists.txt @@ -19,8 +19,11 @@ # (... where everything is explained contrary to this... mess) # +INCLUDE_DIRECTORIES(${UMFPACK_BUNDLED_INCLUDE_DIRS}) + # # *Shush!* +# (Remove locally in this subdirectory) # STRIP_FLAG(DEAL_II_CXX_FLAGS "-pedantic") STRIP_FLAG(DEAL_II_CXX_FLAGS "-Wall") diff --git a/deal.II/cmake/checks/check_02_system_features.cmake b/deal.II/cmake/checks/check_02_system_features.cmake index 20c158c636..259465b9f9 100644 --- a/deal.II/cmake/checks/check_02_system_features.cmake +++ b/deal.II/cmake/checks/check_02_system_features.cmake @@ -58,13 +58,7 @@ CHECK_CXX_SYMBOL_EXISTS("rand_r" "stdlib.h" HAVE_RAND_R) # # Do we have the Bessel function jn? # -# Switch the library preference back to prefer dynamic libraries if -# DEAL_II_PREFER_STATIC_LIBS=TRUE but DEAL_II_STATIC_EXECUTABLE=FALSE. In -# this case system libraries should be linked dynamically. -# -SWITCH_LIBRARY_PREFERENCE() -FIND_LIBRARY(m_LIBRARY NAMES m) -SWITCH_LIBRARY_PREFERENCE() +FIND_SYSTEM_LIBRARY(m_LIBRARY NAMES m) MARK_AS_ADVANCED(m_LIBRARY) IF(NOT m_LIBRARY MATCHES "-NOTFOUND") @@ -72,7 +66,7 @@ IF(NOT m_LIBRARY MATCHES "-NOTFOUND") CHECK_CXX_SYMBOL_EXISTS("jn" "math.h" HAVE_JN) RESET_CMAKE_REQUIRED() IF(HAVE_JN) - LIST(APPEND DEAL_II_EXTERNAL_LIBRARIES ${m_LIBRARY}) + LIST(APPEND DEAL_II_LIBRARIES ${m_LIBRARY}) ENDIF() ENDIF() diff --git a/deal.II/cmake/config/CMakeLists.txt b/deal.II/cmake/config/CMakeLists.txt index 4ade81d2b2..465d18de1f 100644 --- a/deal.II/cmake/config/CMakeLists.txt +++ b/deal.II/cmake/config/CMakeLists.txt @@ -28,15 +28,6 @@ MESSAGE(STATUS "Setting up project configuration") -# -# Read in auxiliary include directories for the build directory -# configuration: -# -FILE(STRINGS - ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/deal_ii_source_includes - deal_ii_source_includes - ) - # # Configure the template-arguments file # @@ -113,8 +104,8 @@ FOREACH(_build ${DEAL_II_BUILD_TYPES}) ENDIF() LIST(APPEND CONFIG_LIBRARIES_${_build} - ${DEAL_II_EXTERNAL_LIBRARIES_${_build}} - ${DEAL_II_EXTERNAL_LIBRARIES} + ${DEAL_II_LIBRARIES_${_build}} + ${DEAL_II_LIBRARIES} ) LIST(APPEND CONFIG_LIBRARIES ${_keyword} @@ -140,7 +131,7 @@ SET(CONFIG_INCLUDE_DIRS \${DEAL_II_PATH}/include/deal.II ${CMAKE_SOURCE_DIR}/include/ ${CMAKE_SOURCE_DIR}/include/deal.II - ${deal_ii_source_includes} + ${DEAL_II_BUNDLED_INCLUDE_DIRS} ${DEAL_II_USER_INCLUDE_DIRS} ) CONFIGURE_FILE( @@ -236,8 +227,8 @@ IF(DEAL_II_COMPONENT_COMPAT_FILES) SET(_libs) FOREACH(_lib - ${DEAL_II_EXTERNAL_LIBRARIES_${build}} - ${DEAL_II_EXTERNAL_LIBRARIES} + ${DEAL_II_LIBRARIES_${build}} + ${DEAL_II_LIBRARIES} ) IF(_lib MATCHES "^\\s*\\/" AND NOT _lib MATCHES "\\.framework$") LIST(APPEND _libs "${_lib}") @@ -252,8 +243,8 @@ IF(DEAL_II_COMPONENT_COMPAT_FILES) SET(_paths) FOREACH(_lib $(D)/${DEAL_II_LIBRARY_RELDIR}/${CONFIG_LIBRARY_${build}} - ${DEAL_II_EXTERNAL_LIBRARIES_${build}} - ${DEAL_II_EXTERNAL_LIBRARIES} + ${DEAL_II_LIBRARIES_${build}} + ${DEAL_II_LIBRARIES} ) # @@ -351,7 +342,7 @@ IF(DEAL_II_COMPONENT_COMPAT_FILES) $(D)/install/deal.II ${CMAKE_SOURCE_DIR}/include/ ${CMAKE_SOURCE_DIR}/include/deal.II - ${deal_ii_source_includes} + ${DEAL_II_BUNDLED_INCLUDE_DIRS} ${DEAL_II_USER_INCLUDE_DIRS} ) CONFIGURE_FILE( diff --git a/deal.II/cmake/configure/configure_1_bzip2.cmake b/deal.II/cmake/configure/configure_1_bzip2.cmake index 61fd319e7e..a905aad144 100644 --- a/deal.II/cmake/configure/configure_1_bzip2.cmake +++ b/deal.II/cmake/configure/configure_1_bzip2.cmake @@ -19,12 +19,11 @@ # MACRO(FEATURE_BZIP2_FIND_EXTERNAL var) - FIND_PACKAGE(BZip2) IF(BZIP2_FOUND) # - # Rename some variables: + # Rename variables: # SET(BZIP2_VERSION ${BZIP2_VERSION_STRING}) SET(BZIP2_INCLUDE_DIRS ${BZIP2_INCLUDE_DIR}) diff --git a/deal.II/cmake/configure/configure_1_lapack.cmake b/deal.II/cmake/configure/configure_1_lapack.cmake index ede31c24ba..258af871f2 100644 --- a/deal.II/cmake/configure/configure_1_lapack.cmake +++ b/deal.II/cmake/configure/configure_1_lapack.cmake @@ -1,7 +1,7 @@ ## --------------------------------------------------------------------- ## $Id$ ## -## Copyright (C) 2012 - 2013 by the deal.II authors +## Copyright (C) 2012 - 2014 by the deal.II authors ## ## This file is part of the deal.II library. ## @@ -80,7 +80,6 @@ ENDMACRO() MACRO(FEATURE_LAPACK_CONFIGURE_EXTERNAL) - REGISTER_FEATURE(LAPACK) CHECK_FOR_LAPACK_FUNCTIONS() ENDMACRO() diff --git a/deal.II/cmake/configure/configure_1_mpi.cmake b/deal.II/cmake/configure/configure_1_mpi.cmake index 1927e8ecbd..a73e27d962 100644 --- a/deal.II/cmake/configure/configure_1_mpi.cmake +++ b/deal.II/cmake/configure/configure_1_mpi.cmake @@ -1,7 +1,7 @@ ## --------------------------------------------------------------------- ## $Id$ ## -## Copyright (C) 2012 - 2013 by the deal.II authors +## Copyright (C) 2012 - 2014 by the deal.II authors ## ## This file is part of the deal.II library. ## @@ -18,7 +18,7 @@ # Configuration for mpi support: # # We look for the C and Fortran libraries as well because they are needed -# by some external libraries: +# by some external libraries for the link interface: # MACRO(FEATURE_MPI_FIND_EXTERNAL var) @@ -137,6 +137,9 @@ MACRO(FEATURE_MPI_FIND_EXTERNAL var) SET(${var} TRUE) ENDIF() + # Hide some variables: + MARK_AS_ADVANCED(MPI_EXTRA_LIBRARY MPI_LIBRARY MPI_MPI_H) + # # Populate correct variables: # @@ -145,19 +148,6 @@ MACRO(FEATURE_MPI_FIND_EXTERNAL var) SET(MPI_CXX_FLAGS ${MPI_CXX_COMPILE_FLAGS}) SET(MPI_LINKER_FLAGS "${MPI_CXX_LINK_FLAGS}") - # Hide some variables: - MARK_AS_ADVANCED(MPI_EXTRA_LIBRARY MPI_LIBRARY MPI_MPI_H) - -ENDMACRO() - - -MACRO(FEATURE_MPI_CONFIGURE_EXTERNAL) - # - # The user has to know the location of the mpi headers as well: - # - SET(MPI_ADD_TO_USER_INCLUDE_DIRS TRUE) - - REGISTER_FEATURE(MPI) ENDMACRO() @@ -179,3 +169,8 @@ ENDMACRO() CONFIGURE_FEATURE(MPI) + +# +# The user has to know the location of the mpi headers as well: +# +SET(MPI_USER_INCLUDE_DIRS ${MPI_INCLUDE_DIRS}) diff --git a/deal.II/cmake/configure/configure_1_threads.cmake b/deal.II/cmake/configure/configure_1_threads.cmake index c7265653bb..1d712c04b7 100644 --- a/deal.II/cmake/configure/configure_1_threads.cmake +++ b/deal.II/cmake/configure/configure_1_threads.cmake @@ -1,7 +1,7 @@ ## --------------------------------------------------------------------- ## $Id$ ## -## Copyright (C) 2012 - 2013 by the deal.II authors +## Copyright (C) 2012 - 2014 by the deal.II authors ## ## This file is part of the deal.II library. ## @@ -30,22 +30,16 @@ MACRO(SETUP_THREADING) # Unfortunately the FindThreads macro needs a working C compiler # IF(CMAKE_C_COMPILER_WORKS) - # - # Switch the library preference back to prefer dynamic libraries if - # DEAL_II_PREFER_STATIC_LIBS=TRUE but DEAL_II_STATIC_EXECUTABLE=FALSE. In - # this case system libraries should be linked dynamically. - # - SWITCH_LIBRARY_PREFERENCE() - # # Clear the test flags because FindThreads.cmake will use a C compiler: # CLEAR_CMAKE_REQUIRED() + SWITCH_LIBRARY_PREFERENCE() FIND_PACKAGE(Threads) + SWITCH_LIBRARY_PREFERENCE() RESET_CMAKE_REQUIRED() - SWITCH_LIBRARY_PREFERENCE() ELSE() @@ -63,7 +57,7 @@ MACRO(SETUP_THREADING) IF(NOT Threads_FOUND) # - # TODO: This is a dead end. Threading might be setup with internal TBB + # TODO: This is a dead end. Threading might be set up with internal TBB # so we have no way of returning unsuccessfully... # MESSAGE(FATAL_ERROR @@ -88,7 +82,7 @@ MACRO(SETUP_THREADING) ENDIF() ENDIF() - ADD_FLAGS(DEAL_II_LINKER_FLAGS "${CMAKE_THREAD_LIBS_INIT}") + ADD_FLAGS(THREADS_LINKER_FLAGS "${CMAKE_THREAD_LIBS_INIT}") # # Set up some posix thread specific configuration toggles: @@ -152,13 +146,10 @@ ENDMACRO() MACRO(FEATURE_THREADS_CONFIGURE_EXTERNAL) - REGISTER_FEATURE(TBB) - - # TODO: Refactor IF(CMAKE_BUILD_TYPE MATCHES "Debug") IF(TBB_WITH_DEBUG_LIB) - LIST(APPEND DEAL_II_DEFINITIONS_DEBUG "TBB_USE_DEBUG" "TBB_DO_ASSERT=1") - LIST(APPEND DEAL_II_USER_DEFINITIONS_DEBUG "TBB_USE_DEBUG" "TBB_DO_ASSERT=1") + LIST(APPEND THREADS_DEFINITIONS_DEBUG "TBB_USE_DEBUG" "TBB_DO_ASSERT=1") + LIST(APPEND THREADS_USER_DEFINITIONS_DEBUG "TBB_USE_DEBUG" "TBB_DO_ASSERT=1") ENDIF() ENDIF() @@ -169,15 +160,14 @@ MACRO(FEATURE_THREADS_CONFIGURE_EXTERNAL) IF( DEAL_II_WITH_CXX11 AND NOT DEAL_II_HAVE_CXX11_IS_TRIVIALLY_COPYABLE AND NOT CMAKE_CXX_COMPILER_ID MATCHES "GNU" ) - LIST(APPEND DEAL_II_DEFINITIONS "TBB_IMPLEMENT_CPP0X=1") - LIST(APPEND DEAL_II_USER_DEFINITIONS "TBB_IMPLEMENT_CPP0X=1") + LIST(APPEND THREADS_DEFINITIONS "TBB_IMPLEMENT_CPP0X=1") + LIST(APPEND THREADS_USER_DEFINITIONS "TBB_IMPLEMENT_CPP0X=1") ENDIF() SETUP_THREADING() - # TODO: Refactor this mess of a configure file... - SET(THREADS_LIBRARIES ${TBB_LIBRARIES}) - SET(THREADS_INCLUDE_DIRS ${TBB_INCLUDE_DIRS}) + LIST(APPEND THREADS_LIBRARIES ${TBB_LIBRARIES}) + LIST(APPEND THREADS_INCLUDE_DIRS ${TBB_INCLUDE_DIRS}) ENDMACRO() @@ -191,15 +181,15 @@ MACRO(FEATURE_THREADS_CONFIGURE_BUNDLED) # # We have to disable a bunch of warnings: # - ENABLE_IF_SUPPORTED(DEAL_II_CXX_FLAGS "-Wno-parentheses") - ENABLE_IF_SUPPORTED(DEAL_II_CXX_FLAGS "-Wno-long-long") + ENABLE_IF_SUPPORTED(THREADS_CXX_FLAGS "-Wno-parentheses") + ENABLE_IF_SUPPORTED(THREADS_CXX_FLAGS "-Wno-long-long") # # Add some definitions to use the header files in debug mode: # IF (CMAKE_BUILD_TYPE MATCHES "Debug") - LIST(APPEND DEAL_II_DEFINITIONS_DEBUG "TBB_USE_DEBUG" "TBB_DO_ASSERT=1") - LIST(APPEND DEAL_II_USER_DEFINITIONS_DEBUG "TBB_USE_DEBUG" "TBB_DO_ASSERT=1") + LIST(APPEND THREADS_DEFINITIONS_DEBUG "TBB_USE_DEBUG" "TBB_DO_ASSERT=1") + LIST(APPEND THREADS_USER_DEFINITIONS_DEBUG "TBB_USE_DEBUG" "TBB_DO_ASSERT=1") ENDIF() # @@ -209,20 +199,22 @@ MACRO(FEATURE_THREADS_CONFIGURE_BUNDLED) IF( DEAL_II_WITH_CXX11 AND NOT DEAL_II_HAVE_CXX11_IS_TRIVIALLY_COPYABLE AND NOT CMAKE_CXX_COMPILER_ID MATCHES "GNU" ) - LIST(APPEND DEAL_II_DEFINITIONS "TBB_IMPLEMENT_CPP0X=1") - LIST(APPEND DEAL_II_USER_DEFINITIONS "TBB_IMPLEMENT_CPP0X=1") + LIST(APPEND THREADS_DEFINITIONS "TBB_IMPLEMENT_CPP0X=1") + LIST(APPEND THREADS_USER_DEFINITIONS "TBB_IMPLEMENT_CPP0X=1") ENDIF() # # tbb uses dlopen/dlclose, so link against libdl.so as well: # - FIND_LIBRARY(dl_LIBRARY NAMES dl) + # TODO: Also necessary for external lib, use preference toggle + # + FIND_SYSTEM_LIBRARY(dl_LIBRARY NAMES dl) MARK_AS_ADVANCED(dl_LIBRARY) IF(NOT dl_LIBRARY MATCHES "-NOTFOUND") - LIST(APPEND DEAL_II_EXTERNAL_LIBRARIES ${dl_LIBRARY}) + LIST(APPEND THREADS_LIBRARIES ${dl_LIBRARY}) ENDIF() - INCLUDE_DIRECTORIES(${TBB_FOLDER}/include) + LIST(APPEND THREADS_BUNDLED_INCLUDE_DIRS ${TBB_FOLDER}/include) ENDMACRO() diff --git a/deal.II/cmake/configure/configure_2_metis.cmake b/deal.II/cmake/configure/configure_2_metis.cmake index 1a49a2c7c2..739c7a6274 100644 --- a/deal.II/cmake/configure/configure_2_metis.cmake +++ b/deal.II/cmake/configure/configure_2_metis.cmake @@ -1,7 +1,7 @@ ## --------------------------------------------------------------------- ## $Id$ ## -## Copyright (C) 2012 - 2013 by the deal.II authors +## Copyright (C) 2012 - 2014 by the deal.II authors ## ## This file is part of the deal.II library. ## diff --git a/deal.II/cmake/configure/configure_2_trilinos.cmake b/deal.II/cmake/configure/configure_2_trilinos.cmake index e04bbfac41..b7b0006211 100644 --- a/deal.II/cmake/configure/configure_2_trilinos.cmake +++ b/deal.II/cmake/configure/configure_2_trilinos.cmake @@ -1,7 +1,7 @@ ## --------------------------------------------------------------------- ## $Id$ ## -## Copyright (C) 2012 - 2013 by the deal.II authors +## Copyright (C) 2012 - 2014 by the deal.II authors ## ## This file is part of the deal.II library. ## @@ -163,8 +163,8 @@ MACRO(FEATURE_TRILINOS_FIND_EXTERNAL var) IF(DEAL_II_WITH_CXX11 AND NOT TRILINOS_SUPPORTS_CPP11) IF(TRILINOS_HAS_C99_TR1_WORKAROUND) - LIST(APPEND DEAL_II_DEFINITIONS "HAS_C99_TR1_CMATH") - LIST(APPEND DEAL_II_USER_DEFINITIONS "HAS_C99_TR1_CMATH") + LIST(APPEND TRILINOS_DEFINITIONS "HAS_C99_TR1_CMATH") + LIST(APPEND TRILINOS_USER_DEFINITIONS "HAS_C99_TR1_CMATH") ELSE() MESSAGE(STATUS "Could not find a sufficient Trilinos installation: " "The installation is not compatible with the C++ standard selected for " @@ -195,8 +195,7 @@ ENDMACRO() MACRO(FEATURE_TRILINOS_CONFIGURE_EXTERNAL) - SET(TRILINOS_ADD_TO_USER_INCLUDE_DIRS TRUE) - REGISTER_FEATURE(TRILINOS) + SET(TRILINOS_USER_INCLUDE_DIRS ${TRILINOS_INCLUDE_DIRS}) SET(DEAL_II_EXPAND_TRILINOS_VECTOR "TrilinosWrappers::Vector") SET(DEAL_II_EXPAND_TRILINOS_BLOCKVECTOR "TrilinosWrappers::BlockVector") @@ -208,9 +207,9 @@ MACRO(FEATURE_TRILINOS_CONFIGURE_EXTERNAL) # # Disable a bunch of warnings caused by Trilinos headers: # - ENABLE_IF_SUPPORTED(DEAL_II_CXX_FLAGS "-Wno-unused") - ENABLE_IF_SUPPORTED(DEAL_II_CXX_FLAGS "-Wno-extra") - ENABLE_IF_SUPPORTED(DEAL_II_CXX_FLAGS "-Wno-overloaded-virtual") + ENABLE_IF_SUPPORTED(TRILINOS_CXX_FLAGS "-Wno-unused") + ENABLE_IF_SUPPORTED(TRILINOS_CXX_FLAGS "-Wno-extra") + ENABLE_IF_SUPPORTED(TRILINOS_CXX_FLAGS "-Wno-overloaded-virtual") ENDMACRO() diff --git a/deal.II/cmake/configure/configure_2_umfpack.cmake b/deal.II/cmake/configure/configure_2_umfpack.cmake index 56ac7e323d..f1d0d74513 100644 --- a/deal.II/cmake/configure/configure_2_umfpack.cmake +++ b/deal.II/cmake/configure/configure_2_umfpack.cmake @@ -1,7 +1,7 @@ ## --------------------------------------------------------------------- ## $Id$ ## -## Copyright (C) 2012 - 2013 by the deal.II authors +## Copyright (C) 2012 - 2014 by the deal.II authors ## ## This file is part of the deal.II library. ## @@ -21,7 +21,7 @@ SET(FEATURE_UMFPACK_DEPENDS DEAL_II_WITH_LAPACK) MACRO(FEATURE_UMFPACK_CONFIGURE_BUNDLED) - INCLUDE_DIRECTORIES( + SET(UMFPACK_BUNDLED_INCLUDE_DIRS ${UMFPACK_FOLDER}/UMFPACK/Include ${UMFPACK_FOLDER}/AMD/Include ) diff --git a/deal.II/cmake/configure/configure_3_petsc.cmake b/deal.II/cmake/configure/configure_3_petsc.cmake index 6ed8f62c24..81cdd69e30 100644 --- a/deal.II/cmake/configure/configure_3_petsc.cmake +++ b/deal.II/cmake/configure/configure_3_petsc.cmake @@ -1,7 +1,7 @@ ## --------------------------------------------------------------------- ## $Id$ ## -## Copyright (C) 2012 - 2013 by the deal.II authors +## Copyright (C) 2012 - 2014 by the deal.II authors ## ## This file is part of the deal.II library. ## @@ -112,15 +112,13 @@ ENDMACRO() MACRO(FEATURE_PETSC_CONFIGURE_EXTERNAL) - INCLUDE_DIRECTORIES(${PETSC_INCLUDE_DIRS}) - SET(PETSC_ADD_TO_USER_INCLUDE_DIRS TRUE) - REGISTER_FEATURE(PETSC) + SET(PETSC_USER_INCLUDE_DIRS ${PETSC_INCLUDE_DIRS}) # # Disable a bunch of warnings when compiling with petsc: # - ENABLE_IF_SUPPORTED(DEAL_II_CXX_FLAGS "-Wno-long-long") + ENABLE_IF_SUPPORTED(PETSC_CXX_FLAGS "-Wno-long-long") SET(DEAL_II_EXPAND_PETSC_VECTOR "PETScWrappers::Vector") SET(DEAL_II_EXPAND_PETSC_BLOCKVECTOR "PETScWrappers::BlockVector") diff --git a/deal.II/cmake/configure/configure_boost.cmake b/deal.II/cmake/configure/configure_boost.cmake index de29304bbf..ec72b800a2 100644 --- a/deal.II/cmake/configure/configure_boost.cmake +++ b/deal.II/cmake/configure/configure_boost.cmake @@ -1,7 +1,7 @@ ## --------------------------------------------------------------------- ## $Id$ ## -## Copyright (C) 2012 - 2013 by the deal.II authors +## Copyright (C) 2012 - 2014 by the deal.II authors ## ## This file is part of the deal.II library. ## @@ -105,19 +105,18 @@ MACRO(FEATURE_BOOST_FIND_EXTERNAL var) ENDMACRO() -# -# The user has to know the location of the boost headers as well: -# -SET(BOOST_ADD_TO_USER_INCLUDE_DIRS TRUE) - - MACRO(FEATURE_BOOST_CONFIGURE_BUNDLED) - INCLUDE_DIRECTORIES(${BOOST_FOLDER}/include) + SET(BOOST_BUNDLED_INCLUDE_DIRS ${BOOST_FOLDER}/include) ENDMACRO() CONFIGURE_FEATURE(BOOST) +# +# The user has to know the location of the boost headers as well: +# +SET(BOOST_USER_INCLUDE_DIRS ${BOOST_INCLUDE_DIRS}) + # # DEAL_II_WITH_BOOST is always required. # diff --git a/deal.II/cmake/configure/configure_functionparser.cmake b/deal.II/cmake/configure/configure_functionparser.cmake index c9abde129d..4794106652 100644 --- a/deal.II/cmake/configure/configure_functionparser.cmake +++ b/deal.II/cmake/configure/configure_functionparser.cmake @@ -1,7 +1,7 @@ ## --------------------------------------------------------------------- ## $Id$ ## -## Copyright (C) 2012 - 2013 by the deal.II authors +## Copyright (C) 2012 - 2014 by the deal.II authors ## ## This file is part of the deal.II library. ## @@ -26,7 +26,7 @@ ENDMACRO() MACRO(FEATURE_FUNCTIONPARSER_CONFIGURE_BUNDLED) - INCLUDE_DIRECTORIES(${FUNCTIONPARSER_FOLDER}) + SET(FUNCTIONPARSER_BUNDLED_INCLUDE_DIRS ${FUNCTIONPARSER_FOLDER}) ENDMACRO() diff --git a/deal.II/cmake/configure/configure_hdf5.cmake b/deal.II/cmake/configure/configure_hdf5.cmake index 81e71ceffa..5dd027d482 100644 --- a/deal.II/cmake/configure/configure_hdf5.cmake +++ b/deal.II/cmake/configure/configure_hdf5.cmake @@ -1,7 +1,7 @@ ## --------------------------------------------------------------------- ## $Id$ ## -## Copyright (C) 2012 - 2013 by the deal.II authors +## Copyright (C) 2012 - 2014 by the deal.II authors ## ## This file is part of the deal.II library. ## @@ -47,10 +47,10 @@ MACRO(FEATURE_HDF5_FIND_EXTERNAL var) ENDMACRO() +CONFIGURE_FEATURE(HDF5) + + # # The user has to know the location of the hdf5 headers as well: # -SET(HDF5_ADD_TO_USER_INCLUDE_DIRS TRUE) - - -CONFIGURE_FEATURE(HDF5) +SET(HDF5_USER_INCLUDE_DIRS ${HDF5_INCLUDE_DIRS}) diff --git a/deal.II/cmake/configure/configure_mumps.cmake b/deal.II/cmake/configure/configure_mumps.cmake index 4022f98026..a02e94d0b9 100644 --- a/deal.II/cmake/configure/configure_mumps.cmake +++ b/deal.II/cmake/configure/configure_mumps.cmake @@ -1,7 +1,7 @@ ## --------------------------------------------------------------------- ## $Id$ ## -## Copyright (C) 2012 - 2013 by the deal.II authors +## Copyright (C) 2012 - 2014 by the deal.II authors ## ## This file is part of the deal.II library. ## @@ -21,10 +21,9 @@ SET(FEATURE_MUMPS_DEPENDS DEAL_II_WITH_MPI DEAL_II_WITH_LAPACK) +CONFIGURE_FEATURE(MUMPS) + # # The user has to know the location of the MUMPS headers as well: # -SET(MUMPS_ADD_TO_USER_INCLUDE_DIRS TRUE) - - -CONFIGURE_FEATURE(MUMPS) +SET(MUMPS_USER_INCLUDE_DIRS ${MUMPS_INCLUDE_DIRS}) diff --git a/deal.II/cmake/configure/configure_p4est.cmake b/deal.II/cmake/configure/configure_p4est.cmake index 4055c0f30c..a54643b60c 100644 --- a/deal.II/cmake/configure/configure_p4est.cmake +++ b/deal.II/cmake/configure/configure_p4est.cmake @@ -1,7 +1,7 @@ ## --------------------------------------------------------------------- ## $Id$ ## -## Copyright (C) 2012 - 2013 by the deal.II authors +## Copyright (C) 2012 - 2014 by the deal.II authors ## ## This file is part of the deal.II library. ## @@ -75,10 +75,9 @@ MACRO(FEATURE_P4EST_FIND_EXTERNAL var) ENDMACRO() +CONFIGURE_FEATURE(P4EST) + # # The user has to know the location of the P4est headers as well: # -SET(P4EST_ADD_TO_USER_INCLUDE_DIRS TRUE) - - -CONFIGURE_FEATURE(P4EST) +SET(P4EST_USER_INCLUDE_DIRS ${P4EST_INCLUDE_DIRS}) diff --git a/deal.II/cmake/configure/configure_slepc.cmake b/deal.II/cmake/configure/configure_slepc.cmake index fdb87649d0..a4b97958fc 100644 --- a/deal.II/cmake/configure/configure_slepc.cmake +++ b/deal.II/cmake/configure/configure_slepc.cmake @@ -1,7 +1,7 @@ ## --------------------------------------------------------------------- ## $Id$ ## -## Copyright (C) 2012 - 2013 by the deal.II authors +## Copyright (C) 2012 - 2014 by the deal.II authors ## ## This file is part of the deal.II library. ## @@ -58,12 +58,6 @@ MACRO(FEATURE_SLEPC_FIND_EXTERNAL var) ENDMACRO() -# -# The user has to know the location of the SLEPC headers as well: -# -SET(SLEPC_ADD_TO_USER_INCLUDE_DIRS TRUE) - - MACRO(FEATURE_SLEPC_ERROR_MESSAGE) MESSAGE(FATAL_ERROR "\n" "Could not find the SLEPc library!\n" @@ -84,3 +78,8 @@ ENDMACRO() CONFIGURE_FEATURE(SLEPC) + +# +# The user has to know the location of the SLEPC headers as well: +# +SET(SLEPC_USER_INCLUDE_DIRS ${SLEPC_INCLUDE_DIRS}) diff --git a/deal.II/cmake/macros/macro_configure_feature.cmake b/deal.II/cmake/macros/macro_configure_feature.cmake index 240e2bfa0d..219ab2f405 100644 --- a/deal.II/cmake/macros/macro_configure_feature.cmake +++ b/deal.II/cmake/macros/macro_configure_feature.cmake @@ -209,6 +209,7 @@ MACRO(CONFIGURE_FEATURE _feature) IF(FEATURE_${_feature}_HAVE_BUNDLED) RUN_COMMAND("FEATURE_${_feature}_CONFIGURE_BUNDLED()") MESSAGE(STATUS "DEAL_II_WITH_${_feature} successfully set up with bundled packages.") + LIST(APPEND DEAL_II_FEATURES ${_feature}) SET(FEATURE_${_feature}_BUNDLED_CONFIGURED TRUE) SET_CACHED_OPTION(${_feature} ON) ELSE() @@ -233,11 +234,10 @@ MACRO(CONFIGURE_FEATURE _feature) IF(COMMAND FEATURE_${_feature}_CONFIGURE_EXTERNAL) RUN_COMMAND("FEATURE_${_feature}_CONFIGURE_EXTERNAL()") - ELSE() - REGISTER_FEATURE(${_feature}) ENDIF() MESSAGE(STATUS "DEAL_II_WITH_${_feature} successfully set up with external dependencies.") + LIST(APPEND DEAL_II_FEATURES ${_feature}) SET(FEATURE_${_feature}_EXTERNAL_CONFIGURED TRUE) SET_CACHED_OPTION(${_feature} ON) @@ -247,9 +247,12 @@ MACRO(CONFIGURE_FEATURE _feature) IF(FEATURE_${_feature}_HAVE_BUNDLED AND DEAL_II_ALLOW_BUNDLED) RUN_COMMAND("FEATURE_${_feature}_CONFIGURE_BUNDLED()") + MESSAGE(STATUS "DEAL_II_WITH_${_feature} successfully set up with bundled packages.") + LIST(APPEND DEAL_II_FEATURES ${_feature}) SET(FEATURE_${_feature}_BUNDLED_CONFIGURED TRUE) SET_CACHED_OPTION(${_feature} ON) + ELSE() IF(DEAL_II_WITH_${_feature}) IF(COMMAND FEATURE_${_feature}_ERROR_MESSAGE) diff --git a/deal.II/cmake/macros/macro_deal_ii_add_library.cmake b/deal.II/cmake/macros/macro_deal_ii_add_library.cmake index 8efacf6dfe..19d4883aae 100644 --- a/deal.II/cmake/macros/macro_deal_ii_add_library.cmake +++ b/deal.II/cmake/macros/macro_deal_ii_add_library.cmake @@ -39,7 +39,7 @@ MACRO(DEAL_II_ADD_LIBRARY _library) ) SET_TARGET_PROPERTIES(${_library}.${_build_lowercase} PROPERTIES - LINK_FLAGS "${DEAL_II_LINKER_FLAGS};${DEAL_II_LINKER_FLAGS_${_build}}" + LINK_FLAGS "${DEAL_II_LINKER_FLAGS} ${DEAL_II_LINKER_FLAGS_${_build}}" COMPILE_DEFINITIONS "${DEAL_II_DEFINITIONS};${DEAL_II_DEFINITIONS_${_build}}" COMPILE_FLAGS "${DEAL_II_CXX_FLAGS} ${DEAL_II_CXX_FLAGS_${_build}}" LINKER_LANGUAGE "CXX" diff --git a/deal.II/cmake/macros/macro_filter_system_libraries.cmake b/deal.II/cmake/macros/macro_filter_system_libraries.cmake new file mode 100644 index 0000000000..49b4e75bf3 --- /dev/null +++ b/deal.II/cmake/macros/macro_filter_system_libraries.cmake @@ -0,0 +1,43 @@ +## --------------------------------------------------------------------- +## $Id$ +## +## Copyright (C) 2014 by the deal.II authors +## +## This file is part of the deal.II library. +## +## The deal.II library is free software; you can use it, redistribute +## it, and/or modify it under the terms of the GNU Lesser General +## Public License as published by the Free Software Foundation; either +## version 2.1 of the License, or (at your option) any later version. +## The full text of the license can be found in the file LICENSE at +## the top level of the deal.II distribution. +## +## --------------------------------------------------------------------- + +# +# This macro replaces absolute paths to system libraries with the +# corresponding short name within the FEATURE_LIBRARIES(|_DEBUG|_RELEASE) +# variables +# +# Usage: +# FILTER_SYSTEM_LIBRARIES(feature) +# + +MACRO(FILTER_SYSTEM_LIBRARIES _feature) + FOREACH(_variable + ${_feature}_LIBRARIES + ${_feature}_LIBRARIES_DEBUG + ${_feature}_LIBRARIES_RELEASE + ) + IF(DEFINED ${_variable}) + SET(_tmp_${_variable} ${${_variable}}) + SET(${_variable} "") + FOREACH(_lib ${_tmp_${_variable}}) + IF(_lib MATCHES "lib(c|quadmath|gfortran|m|rt|nsl|dl|pthread).so$") + string(REGEX REPLACE ".*lib([a-z]+).so$" "\\1" _lib ${_lib}) + ENDIF() + LIST(APPEND ${_variable} ${_lib}) + ENDFOREACH() + ENDIF() + ENDFOREACH() +ENDMACRO() diff --git a/deal.II/cmake/macros/macro_find_system_library.cmake b/deal.II/cmake/macros/macro_find_system_library.cmake new file mode 100644 index 0000000000..eda5e4a83c --- /dev/null +++ b/deal.II/cmake/macros/macro_find_system_library.cmake @@ -0,0 +1,50 @@ +## --------------------------------------------------------------------- +## $Id$ +## +## Copyright (C) 2013 - 2014 by the deal.II authors +## +## This file is part of the deal.II library. +## +## The deal.II library is free software; you can use it, redistribute +## it, and/or modify it under the terms of the GNU Lesser General +## Public License as published by the Free Software Foundation; either +## version 2.1 of the License, or (at your option) any later version. +## The full text of the license can be found in the file LICENSE at +## the top level of the deal.II distribution. +## +## --------------------------------------------------------------------- + +# +# Search for a system library. In contrast to normal libraries we do this +# purely via "-l" instead of selecting a full library path.. +# +# USAGE: +# FIND_SYSTEM_LIBRARY(variable NAMES [list of possible names]) +# + +MACRO(FIND_SYSTEM_LIBRARY) + SET(_argn ${ARGN}) + LIST(GET _argn 0 _variable) + LIST(REMOVE_AT _argn 0 1) + + if("${_variable}" MATCHES "^${_variable}$") + FOREACH(_arg ${_argn}) + LIST(APPEND CMAKE_REQUIRED_LIBRARIES "-l${_arg}") + CHECK_CXX_COMPILER_FLAG("" ${_variable}) + RESET_CMAKE_REQUIRED() + + IF(${_variable}) + UNSET(${_variable} CACHE) + SET(${_variable} ${_arg} CACHE STRING "A system library.") + SET(${_variable} ${_arg}) + BREAK() + ELSE() + UNSET(${_variable} CACHE) + ENDIF() + ENDFOREACH() + + IF(NOT _variable) + SET(${_variable} "${_variable}-NOTFOUND") + ENDIF() + ENDIF() +ENDMACRO() diff --git a/deal.II/cmake/macros/macro_register_feature.cmake b/deal.II/cmake/macros/macro_register_feature.cmake index 5c590280ee..1f6ed329a0 100644 --- a/deal.II/cmake/macros/macro_register_feature.cmake +++ b/deal.II/cmake/macros/macro_register_feature.cmake @@ -1,7 +1,7 @@ ## --------------------------------------------------------------------- ## $Id$ ## -## Copyright (C) 2013 by the deal.II authors +## Copyright (C) 2013 - 2014 by the deal.II authors ## ## This file is part of the deal.II library. ## @@ -24,9 +24,9 @@ # # This macro will add # -# _LIBRARIES -# _INCLUDE_DIRS(|_DEBUG|_RELEASE) -# _USER_INCLUDE_DIRS(|_DEBUG|_RELEASE) +# _LIBRARIES (respecting general, optimized, debug keyword) +# _LIBRARIES(_DEBUG|_RELEASE) +# _(|BUNDLED_|USER_)INCLUDE_DIRS # _DEFINITIONS(|_DEBUG|_RELEASE) # _USER_DEFINITIONS(|_DEBUG|_RELEASE) # _CXX_FLAGS(|_DEBUG|_RELEASE) @@ -35,38 +35,14 @@ # to the corresponding DEAL_II_* variables # - MACRO(REGISTER_FEATURE _feature) - # variables for include directories: - FOREACH(_var ${_feature}_INCLUDE_DIRS ${_feature}_INCLUDE_PATH) - IF(DEFINED ${_var}) - INCLUDE_DIRECTORIES(${${_var}}) - IF(${_feature}_ADD_TO_USER_INCLUDE_DIRS) - LIST(APPEND DEAL_II_USER_INCLUDE_DIRS ${${_var}}) - ENDIF() - ENDIF() - ENDFOREACH() - - # variables for linker flags: - FOREACH(_var ${_feature}_LINKER_FLAGS ${_feature}_LINK_FLAGS) - IF(DEFINED ${_var}) - ADD_FLAGS(DEAL_II_LINKER_FLAGS "${${_var}}") - ENDIF() - ENDFOREACH() - - # variables for compiler flags: - FOREACH(_var ${_feature}_CXX_FLAGS ${_feature}_COMPILE_FLAGS) - IF(DEFINED ${_var}) - ADD_FLAGS(DEAL_II_CXX_FLAGS "${${_var}}") - ENDIF() - ENDFOREACH() IF(DEFINED ${_feature}_LIBRARIES) # # Add ${_feature}_LIBRARIES to - # DEAL_II_EXTERNAL_LIBRARIES - # DEAL_II_EXTERNAL_LIBRARIES_DEBUG - # DEAL_II_EXTERNAL_LIBRARIES_RELEASE + # DEAL_II_LIBRARIES + # DEAL_II_LIBRARIES_DEBUG + # DEAL_II_LIBRARIES_RELEASE # depending on the "optmized", "debug" or "general" keyword # SET(_toggle "general") @@ -77,14 +53,34 @@ MACRO(REGISTER_FEATURE _feature) SET(_toggle "${_tmp}") ELSE() IF("${_toggle}" STREQUAL "general") - LIST(APPEND DEAL_II_EXTERNAL_LIBRARIES ${_tmp}) + LIST(APPEND DEAL_II_LIBRARIES ${_tmp}) ELSEIF("${_toggle}" STREQUAL "debug") - LIST(APPEND DEAL_II_EXTERNAL_LIBRARIES_DEBUG ${_tmp}) + LIST(APPEND DEAL_II_LIBRARIES_DEBUG ${_tmp}) ELSEIF("${_toggle}" STREQUAL "optimized") - LIST(APPEND DEAL_II_EXTERNAL_LIBRARIES_RELEASE ${_tmp}) + LIST(APPEND DEAL_II_LIBRARIES_RELEASE ${_tmp}) ENDIF() ENDIF() ENDFOREACH() ENDIF() + FOREACH(_var + LIBRARIES_DEBUG LIBRARIES_RELEASE + INCLUDE_DIRS BUNDLED_INCLUDE_DIRS USER_INCLUDE_DIRS + DEFINITIONS DEFINITIONS_DEBUG DEFINITIONS_RELEASE + USER_DEFINITIONS USER_DEFINITIONS_DEBUG USER_DEFINITIONS_RELEASE + ) + IF(DEFINED ${_feature}_${_var}) + LIST(APPEND DEAL_II_${_var} ${${_feature}_${_var}}) + ENDIF() + ENDFOREACH() + + FOREACH(_var + CXX_FLAGS CXX_FLAGS_DEBUG CXX_FLAGS_RELEASE + LINKER_FLAGS LINKER_FLAGS_DEBUG LINKER_FLAGS_RELEASE + ) + IF(DEFINED ${_feature}_${_var}) + ADD_FLAGS(DEAL_II_${_var} "${${_feature}_${_var}}") + ENDIF() + ENDFOREACH() + ENDMACRO() diff --git a/deal.II/cmake/modules/FindDEALII_LAPACK.cmake b/deal.II/cmake/modules/FindDEALII_LAPACK.cmake index 378851f71c..b16cf25b13 100644 --- a/deal.II/cmake/modules/FindDEALII_LAPACK.cmake +++ b/deal.II/cmake/modules/FindDEALII_LAPACK.cmake @@ -50,18 +50,9 @@ FIND_PACKAGE(LAPACK) SET(CMAKE_PREFIX_PATH ${_cmake_prefix_path_backup}) MARK_AS_ADVANCED( - atlas_LIBRARY - atlcblas_LIBRARY - atllapack_LIBRARY - blas_LIBRARY - eigen_blas_LIBRARY - f77blas_LIBRARY - gslcblas_LIBRARY - lapack_LIBRARY - m_LIBRARY - ptf77blas_LIBRARY - ptlapack_LIBRARY - refblas_LIBRARY + atlas_LIBRARY atlcblas_LIBRARY atllapack_LIBRARY blas_LIBRARY + eigen_blas_LIBRARY f77blas_LIBRARY gslcblas_LIBRARY lapack_LIBRARY + m_LIBRARY ptf77blas_LIBRARY ptlapack_LIBRARY refblas_LIBRARY reflapack_LIBRARY ) @@ -94,28 +85,19 @@ IF(LAPACK_FOUND) # If CMAKE_Fortran_IMPLICIT_LINK_LIBRARIES is not available, do it # unconditionally for the most common case (gfortran). # - # Switch the library preference back to prefer dynamic libraries if - # DEAL_II_PREFER_STATIC_LIBS=TRUE but DEAL_II_STATIC_EXECUTABLE=FALSE. In - # this case system libraries should be linked dynamically. - # SET(_fortran_libs ${CMAKE_Fortran_IMPLICIT_LINK_LIBRARIES}) SET_IF_EMPTY(_fortran_libs gfortran m quadmath c) - SWITCH_LIBRARY_PREFERENCE() FOREACH(_lib ${_fortran_libs}) - FIND_LIBRARY(${_lib}_LIBRARY - NAMES ${_lib} - HINTS - ${CMAKE_Fortran_IMPLICIT_LINK_DIRECTORIES} - ${CMAKE_CXX_IMPLICIT_LINK_DIRECTORIES}) + FIND_SYSTEM_LIBRARY(${_lib}_LIBRARY NAMES ${_lib}) MARK_AS_ADVANCED(${_lib}_LIBRARY) IF(NOT ${_lib}_LIBRARY MATCHES "-NOTFOUND") LIST(APPEND BLAS_LIBRARIES ${${_lib}_LIBRARY}) LIST(APPEND LAPACK_LIBRARIES ${${_lib}_LIBRARY}) ENDIF() + ENDFOREACH() - SWITCH_LIBRARY_PREFERENCE() # # Filter out spurious "FALSE" in the library lists: diff --git a/deal.II/cmake/modules/FindPETSC.cmake b/deal.II/cmake/modules/FindPETSC.cmake index 1a4f3122c4..df83255e4d 100644 --- a/deal.II/cmake/modules/FindPETSC.cmake +++ b/deal.II/cmake/modules/FindPETSC.cmake @@ -123,13 +123,18 @@ IF(NOT PETSC_PETSCVARIABLES MATCHES "-NOTFOUND") # Link line: # - FILE(STRINGS "${PETSC_PETSCVARIABLES}" _external_link_line + FILE(STRINGS "${PETSC_PETSCVARIABLES}" PETSC_EXTERNAL_LINK_LINE REGEX "^PETSC_WITH_EXTERNAL_LIB =.*") - SEPARATE_ARGUMENTS(_external_link_line) + SEPARATE_ARGUMENTS(PETSC_EXTERNAL_LINK_LINE) + + IF(NOT "${PETSC_EXTERNAL_LINK_LINE}" STREQUAL "${PETSC_EXTERNAL_LINK_LINE_SAVED}") + SET(_new_petsc_external_link_line TRUE) + ENDIF() + SET(PETSC_EXTERNAL_LINK_LINE_SAVED "${PETSC_EXTERNAL_LINK_LINE}" CACHE INTERNAL "" FORCE) SET(_hints) SET(_petsc_libraries) - FOREACH(_token ${_external_link_line}}) + FOREACH(_token ${PETSC_EXTERNAL_LINK_LINE}}) IF(_token MATCHES "^-L") # Build up hints with the help of all tokens passed with -L: STRING(REGEX REPLACE "^-L" "" _token "${_token}") @@ -137,7 +142,17 @@ IF(NOT PETSC_PETSCVARIABLES MATCHES "-NOTFOUND") ELSEIF(_token MATCHES "^-l") # Search for every library that was specified with -l: STRING(REGEX REPLACE "^-l" "" _token "${_token}") - IF(NOT _token MATCHES "(petsc|stdc\\+\\+|gcc_s)") + + IF(_new_petsc_external_link_line) + UNSET(PETSC_LIBRARY_${_token} CACHE) + ENDIF() + + IF(_token MATCHES "^(c|quadmath|gfortran|m|rt|nsl|dl|pthread)$") + FIND_SYSTEM_LIBRARY(PETSC_LIBRARY_${_token} NAMES ${_token}) + IF(NOT PETSC_LIBRARY_${_token} MATCHES "-NOTFOUND") + LIST(APPEND _petsc_libraries ${PETSC_LIBRARY_${_token}}) + ENDIF() + ELSEIF(NOT _token MATCHES "(petsc|stdc\\+\\+|gcc_s)") FIND_LIBRARY(PETSC_LIBRARY_${_token} NAMES ${_token} HINTS ${_hints} @@ -145,19 +160,13 @@ IF(NOT PETSC_PETSCVARIABLES MATCHES "-NOTFOUND") IF(NOT PETSC_LIBRARY_${_token} MATCHES "-NOTFOUND") LIST(APPEND _petsc_libraries ${PETSC_LIBRARY_${_token}}) ENDIF() - # - # Remove from cache, so that updating PETSC search paths will - # find a (possibly) new link interface - # - UNSET(PETSC_LIBRARY_${_token} CACHE) ENDIF() + ENDIF() ENDFOREACH() ENDIF() - - FIND_PACKAGE_HANDLE_STANDARD_ARGS(PETSC DEFAULT_MSG PETSC_LIBRARY PETSC_INCLUDE_DIR_ARCH diff --git a/deal.II/cmake/modules/FindTRILINOS.cmake b/deal.II/cmake/modules/FindTRILINOS.cmake index 877e550f65..b6526cf4a3 100644 --- a/deal.II/cmake/modules/FindTRILINOS.cmake +++ b/deal.II/cmake/modules/FindTRILINOS.cmake @@ -51,10 +51,10 @@ FIND_PACKAGE(TRILINOS_CONFIG NO_SYSTEM_ENVIRONMENT_PATH ) -IF(NOT "${TRILINOS_CONFIG}" STREQUAL "${TRILINOS_CONFIG_SAVED}") +IF(NOT "${TRILINOS_CONFIG_DIR}" STREQUAL "${TRILINOS_CONFIG_DIR_SAVED}") SET(_new_trilinos_config TRUE) ENDIF() -SET(TRILINOS_CONFIG_SAVED "${TRILINOS_CONFIG}" CACHE INTERNAL "" FORCE) +SET(TRILINOS_CONFIG_DIR_SAVED "${TRILINOS_CONFIG_DIR}" CACHE INTERNAL "" FORCE) # @@ -204,17 +204,15 @@ IF(TRILINOS_FOUND) " TRILINOS_HAS_C99_TR1_WORKAROUND ) - RESET_CMAKE_REQUIRED() - MARK_AS_ADVANCED(TRILINOS_DIR) ELSE() SET(TRILINOS_LIBRARIES) SET(TRILINOS_INCLUDE_DIRS) - SET(TRILINOS_CONFIG_SAVED "" CACHE INTERNAL "" FORCE) + UNSET(TRILINOS_CONFIG_DIR_SAVED CACHE) SET(TRILINOS_DIR "" CACHE PATH "An optional hint to a Trilinos installation" diff --git a/deal.II/cmake/modules/FindUMFPACK.cmake b/deal.II/cmake/modules/FindUMFPACK.cmake index 71f9361e1a..b4048cf40d 100644 --- a/deal.II/cmake/modules/FindUMFPACK.cmake +++ b/deal.II/cmake/modules/FindUMFPACK.cmake @@ -105,6 +105,20 @@ FIND_UMFPACK_LIBRARY(CCOLAMD ccolamd) FIND_UMFPACK_LIBRARY(CAMD camd) FIND_UMFPACK_LIBRARY(SuiteSparse_config suitesparseconfig) +# +# Test whether libsuitesparseconfig.xxx can be used for shared library +# linkage. If not, exclude it from the command line. +# +LIST(APPEND CMAKE_REQUIRED_LIBRARIES + "-shared" + ${SuiteSparse_config_LIBRARY} + ) +CHECK_CXX_SOURCE_COMPILES("extern int SuiteSparse_version (int[3]); + void foo(int bar[3]) { SuiteSparse_version(bar);}" + LAPACK_SUITESPARSECONFIG_WITH_PIC + ) +RESET_CMAKE_REQUIRED() + IF(EXISTS ${UMFPACK_INCLUDE_DIR}/umfpack.h) FILE(STRINGS "${UMFPACK_INCLUDE_DIR}/umfpack.h" UMFPACK_VERSION_MAJOR_STRING REGEX "#define.*UMFPACK_MAIN_VERSION") @@ -161,8 +175,10 @@ IF(UMFPACK_FOUND) ${COLAMD_LIBRARY} ${CAMD_LIBRARY} ${AMD_LIBRARY} - ${SuiteSparse_config_LIBRARY} ) + IF(LAPACK_SUITESPARSECONFIG_WITH_PIC OR NOT BUILD_SHARED_LIBS) + LIST(APPEND UMFPACK_LIBRARIES ${SuiteSparse_config_LIBRARY}) + ENDIF() # # For good measure: @@ -179,9 +195,7 @@ IF(UMFPACK_FOUND) # lib does not record its dependence on librt.so as evidenced # by ldd :-( ): # - SWITCH_LIBRARY_PREFERENCE() - FIND_LIBRARY(rt_LIBRARY NAMES rt) - SWITCH_LIBRARY_PREFERENCE() + FIND_SYSTEM_LIBRARY(rt_LIBRARY NAMES rt) MARK_AS_ADVANCED(rt_LIBRARY) IF(NOT rt_LIBRARY MATCHES "-NOTFOUND") LIST(APPEND UMFPACK_LIBRARIES ${rt_LIBRARY}) diff --git a/deal.II/cmake/setup_compiler_flags.cmake b/deal.II/cmake/setup_compiler_flags.cmake index d8eb42447c..0514c8f624 100644 --- a/deal.II/cmake/setup_compiler_flags.cmake +++ b/deal.II/cmake/setup_compiler_flags.cmake @@ -66,11 +66,13 @@ # Check the user provided CXX flags: # -IF( NOT "${DEAL_II_CXX_FLAGS_SAVED}" STREQUAL "${CACHED_DEAL_II_CXX_FLAGS_SAVED}" - OR NOT "${DEAL_II_LINKER_FLAGS_SAVED}" STREQUAL "${CACHED_DEAL_II_LINKER_FLAGS_SAVED}") +IF(NOT "${DEAL_II_CXX_FLAGS_SAVED}" STREQUAL "${CACHED_DEAL_II_CXX_FLAGS_SAVED}" + OR NOT "${DEAL_II_LINKER_FLAGS_SAVED}" STREQUAL "${CACHED_DEAL_II_LINKER_FLAGS_SAVED}") MESSAGE(STATUS "") # Rerun this test if cxx flags changed: UNSET(DEAL_II_HAVE_USABLE_CXX_FLAGS CACHE) +ELSE() + SET(DEAL_II_HAVE_USABLE_CXX_FLAGS TRUE CACHE INTERNAL "") ENDIF() SET(CACHED_DEAL_II_CXX_FLAGS_SAVED "${DEAL_II_CXX_FLAGS_SAVED}" CACHE INTERNAL "" FORCE) SET(CACHED_DEAL_II_LINKER_FLAGS_SAVED "${DEAL_II_LINKER_FLAGS_SAVED}" CACHE INTERNAL "" FORCE) diff --git a/deal.II/cmake/setup_finalize.cmake b/deal.II/cmake/setup_finalize.cmake index 4baa99b615..22e0d65c08 100644 --- a/deal.II/cmake/setup_finalize.cmake +++ b/deal.II/cmake/setup_finalize.cmake @@ -1,7 +1,7 @@ ## --------------------------------------------------------------------- ## $Id$ ## -## Copyright (C) 2012 - 2013 by the deal.II authors +## Copyright (C) 2012 - 2014 by the deal.II authors ## ## This file is part of the deal.II library. ## @@ -38,7 +38,7 @@ ENDFOREACH() # # Sanity check: The variables defined in DEAL_II_REMOVED_FLAGS must not be -# used during the comfiguration stage: +# used during the configuration stage: # FOREACH(_flag ${DEAL_II_REMOVED_FLAGS}) IF(NOT "${_flag}" STREQUAL "") @@ -52,18 +52,48 @@ FOREACH(_flag ${DEAL_II_REMOVED_FLAGS}) ENDFOREACH() # -# Deduplicate entries in DEAL_II_USER_INCLUDE_DIRS +# Deduplicate entries in *_INCLUDE_DIRS and *_LIBRARIES # -REMOVE_DUPLICATES(DEAL_II_USER_INCLUDE_DIRS) +FOREACH(_feature DEAL_II ${DEAL_II_FEATURES}) + FOREACH(_suffix INCLUDE_DIRS USER_INCLUDE_DIRS BUNDLED_INCLUDE_DIRS) + REMOVE_DUPLICATES(${_feature}_${_suffix}) + ENDFOREACH() + FOREACH(_suffix LIBRARIES LIBRARIES_RELEASE LIBRARIES_DEBUG) + REMOVE_DUPLICATES(${_feature}_${_suffix} REVERSE) + ENDFOREACH() +ENDFOREACH() # -# Deduplicate entries in DEAL_II_EXTERNAL_LIBRARIES(_...) -# in reverse order: +# Save base configuration into variables BASE_* for later use in +# setup_write_config.cmake: # -REMOVE_DUPLICATES(DEAL_II_EXTERNAL_LIBRARIES REVERSE) +FOREACH(_suffix + CXX_FLAGS CXX_FLAGS_RELEASE CXX_FLAGS_DEBUG + DEFINITIONS DEFINITIONS_RELEASE DEFINITIONS_DEBUG + USER_DEFINITIONS USER_DEFINITIONS_RELEASE USER_DEFINITIONS_DEBUG + LINKER_FLAGS LINKER_FLAGS_RELEASE LINKER_FLAGS_DEBUG + INCLUDE_DIRS USER_INCLUDE_DIRS BUNDLED_INCLUDE_DIRS + LIBRARIES LIBRARIES_RELEASE LIBRARIES_DEBUG + ) + SET(BASE_${_suffix} ${DEAL_II_${_suffix}}) +ENDFOREACH() -FOREACH(_build ${DEAL_II_BUILD_TYPES}) - REMOVE_DUPLICATES(DEAL_II_EXTERNAL_LIBRARIES_${_build} REVERSE) +# +# Register features: +# +FOREACH(_feature ${DEAL_II_FEATURES}) + FILTER_SYSTEM_LIBRARIES(${_feature}) + REGISTER_FEATURE(${_feature}) +ENDFOREACH() + +# +# Deduplicate entries one more time :-] +# +FOREACH(_suffix INCLUDE_DIRS USER_INCLUDE_DIRS BUNDLED_INCLUDE_DIRS) + REMOVE_DUPLICATES(DEAL_II_${_suffix}) +ENDFOREACH() +FOREACH(_suffix LIBRARIES LIBRARIES_RELEASE LIBRARIES_DEBUG) + REMOVE_DUPLICATES(DEAL_II_${_suffix} REVERSE) ENDFOREACH() # @@ -78,15 +108,10 @@ FOREACH(_build ${DEAL_II_BUILD_TYPES}) ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/deal_ii_objects_${_build_lowercase} ) ENDFOREACH() -FILE(WRITE - ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/deal_ii_source_includes - "" - ) # # Cleanup deal.IITargets.cmake in the build directory: # -FILE(WRITE +FILE(REMOVE ${CMAKE_BINARY_DIR}/${DEAL_II_PROJECT_CONFIG_RELDIR}/${DEAL_II_PROJECT_CONFIG_NAME}Targets.cmake - "" ) diff --git a/deal.II/cmake/setup_sanity_checks.cmake b/deal.II/cmake/setup_sanity_checks.cmake new file mode 100644 index 0000000000..f8091b7507 --- /dev/null +++ b/deal.II/cmake/setup_sanity_checks.cmake @@ -0,0 +1,72 @@ +## --------------------------------------------------------------------- +## $Id$ +## +## Copyright (C) 2014 by the deal.II authors +## +## This file is part of the deal.II library. +## +## The deal.II library is free software; you can use it, redistribute +## it, and/or modify it under the terms of the GNU Lesser General +## Public License as published by the Free Software Foundation; either +## version 2.1 of the License, or (at your option) any later version. +## The full text of the license can be found in the file LICENSE at +## the top level of the deal.II distribution. +## +## --------------------------------------------------------------------- + + +######################################################################## +# # +# Sanity checks: # +# # +######################################################################## + +# +# A quick test whether we're able to successfully link with the given +# compiler and linker flags and the given library link interface: +# + +MESSAGE(STATUS "") +MESSAGE(STATUS "Sanity checks.") + +FOREACH(_build ${DEAL_II_BUILD_TYPES}) + + FOREACH(_var + CXX_FLAGS CXX_FLAGS_${_build} + LINKER_FLAGS LINKER_FLAGS_${_build} + LIBRARIES LIBRARIES_${_build} + ) + IF(NOT "${DEAL_II_${_var}}" STREQUAL "${CACHED_DEAL_II_${_var}_${_build}}") + UNSET(DEAL_II_SANITY_CHECK_${_build} CACHE) + SET(CACHED_DEAL_II_${_var}_${_build} "${DEAL_II_${_var}}" CACHE INTERNAL "" FORCE) + ENDIF() + ENDFOREACH() + + RESET_CMAKE_REQUIRED() + ADD_FLAGS(CMAKE_REQUIRED_FLAGS + "${DEAL_II_CXX_FLAGS} ${DEAL_II_CXX_FLAGS_${_build}}" + ) + LIST(APPEND CMAKE_REQUIRED_LIBRARIES + "${DEAL_II_LINKER_FLAGS} ${DEAL_II_CXX_LINKER_${_build}}" + ) + LIST(APPEND CMAKE_REQUIRED_LIBRARIES + ${DEAL_II_LIBRARIES} + ${DEAL_II_LIBRARIES_${_build}} + ) + CHECK_CXX_SOURCE_COMPILES("int main(){ return 0; }" + DEAL_II_SANITY_CHECK_${_build} + ) + RESET_CMAKE_REQUIRED() + + IF(NOT DEAL_II_SANITY_CHECK_${_build}) + UNSET(DEAL_II_SANITY_CHECK_${_build} CACHE) + MESSAGE(FATAL_ERROR " + Configuration error: Cannot compile and link with the current set of + compiler flags, linker flags and libraries! + + Please check the test output given at the end of + CMakeFiles/CMakeError.log and consult detailed.log for the current + configuration.\n\n" + ) + ENDIF() +ENDFOREACH() diff --git a/deal.II/cmake/setup_write_config.cmake b/deal.II/cmake/setup_write_config.cmake index f3062a3907..1afca5ff20 100644 --- a/deal.II/cmake/setup_write_config.cmake +++ b/deal.II/cmake/setup_write_config.cmake @@ -1,7 +1,7 @@ ## --------------------------------------------------------------------- ## $Id$ ## -## Copyright (C) 2012 - 2013 by the deal.II authors +## Copyright (C) 2014 by the deal.II authors ## ## This file is part of the deal.II library. ## @@ -76,31 +76,51 @@ ENDIF() _both("#\n") _detailed( -"# Compiler flags used for this build: -# DEAL_II_CXX_FLAGS: ${DEAL_II_CXX_FLAGS} +"# Base configuration (prior to feature configuration): +# DEAL_II_CXX_FLAGS: ${BASE_CXX_FLAGS} " ) IF(CMAKE_BUILD_TYPE MATCHES "Release") - _detailed("# DEAL_II_CXX_FLAGS_RELEASE: ${DEAL_II_CXX_FLAGS_RELEASE}\n") + _detailed("# DEAL_II_CXX_FLAGS_RELEASE: ${BASE_CXX_FLAGS_RELEASE}\n") ENDIF() IF(CMAKE_BUILD_TYPE MATCHES "Debug") - _detailed("# DEAL_II_CXX_FLAGS_DEBUG: ${DEAL_II_CXX_FLAGS_DEBUG}\n") + _detailed("# DEAL_II_CXX_FLAGS_DEBUG: ${BASE_CXX_FLAGS_DEBUG}\n") ENDIF() -_detailed("# DEAL_II_LINKER_FLAGS: ${DEAL_II_LINKER_FLAGS}\n") +_detailed("# DEAL_II_LINKER_FLAGS: ${BASE_LINKER_FLAGS}\n") IF(CMAKE_BUILD_TYPE MATCHES "Release") - _detailed("# DEAL_II_LINKER_FLAGS_RELEASE: ${DEAL_II_LINKER_FLAGS_RELEASE}\n") + _detailed("# DEAL_II_LINKER_FLAGS_RELEASE: ${BASE_LINKER_FLAGS_RELEASE}\n") ENDIF() IF(CMAKE_BUILD_TYPE MATCHES "Debug") - _detailed("# DEAL_II_LINKER_FLAGS_DEBUG: ${DEAL_II_LINKER_FLAGS_DEBUG}\n") + _detailed("# DEAL_II_LINKER_FLAGS_DEBUG: ${BASE_LINKER_FLAGS_DEBUG}\n") ENDIF() -_detailed("# DEAL_II_DEFINITIONS: ${DEAL_II_DEFINITIONS}\n") +_detailed("# DEAL_II_DEFINITIONS: ${BASE_DEFINITIONS}\n") IF(CMAKE_BUILD_TYPE MATCHES "Release") - _detailed("# DEAL_II_DEFINITIONS_RELEASE: ${DEAL_II_DEFINITIONS_RELEASE}\n") + _detailed("# DEAL_II_DEFINITIONS_RELEASE: ${BASE_DEFINITIONS_RELEASE}\n") ENDIF() IF(CMAKE_BUILD_TYPE MATCHES "Debug") - _detailed("# DEAL_II_DEFINITIONS_DEBUG: ${DEAL_II_DEFINITIONS_DEBUG}\n") + _detailed("# DEAL_II_DEFINITIONS_DEBUG: ${BASE_DEFINITIONS_DEBUG}\n") +ENDIF() + +_detailed("# DEAL_II_USER_DEFINITIONS: ${BASE_DEFINITIONS}\n") +IF(CMAKE_BUILD_TYPE MATCHES "Release") + _detailed("# DEAL_II_USER_DEFINITIONS_REL: ${BASE_DEFINITIONS_RELEASE}\n") +ENDIF() +IF(CMAKE_BUILD_TYPE MATCHES "Debug") + _detailed("# DEAL_II_USER_DEFINITIONS_DEB: ${BASE_DEFINITIONS_DEBUG}\n") +ENDIF() + +_detailed("# DEAL_II_INCLUDE_DIRS ${BASE_INCLUDE_DIRS}\n") +_detailed("# DEAL_II_USER_INCLUDE_DIRS: ${BASE_USER_INCLUDE_DIRS}\n") +_detailed("# DEAL_II_BUNDLED_INCLUDE_DIRS: ${BASE_BUNDLED_INCLUDE_DIRS}\n") + +_detailed("# DEAL_II_LIBRARIES: ${BASE_LIBRARIES}\n") +IF(CMAKE_BUILD_TYPE MATCHES "Release") + _detailed("# DEAL_II_LIBRARIES_RELEASE: ${BASE_LIBRARIES_RELEASE}\n") +ENDIF() +IF(CMAKE_BUILD_TYPE MATCHES "Debug") + _detailed("# DEAL_II_LIBRARIES_DEBUG: ${BASE_LIBRARIES_DEBUG}\n") ENDIF() _detailed("#\n") @@ -134,50 +154,14 @@ ENDFOREACH() FOREACH(_var ${_features}) IF(${${_var}}) - # FEATURE is enabled + + # + # The feature is enabled: + # STRING(REGEX REPLACE "^DEAL_II_WITH_" "" _feature ${_var}) IF(FEATURE_${_feature}_EXTERNAL_CONFIGURED) _both("# ${_var} set up with external dependencies\n") - - # - # Print out version number: - # - IF(DEFINED ${_feature}_VERSION) - _detailed("# ${_feature}_VERSION = ${${_feature}_VERSION}\n") - ENDIF() - - # - # Special version numbers: - # - IF(_feature MATCHES "THREADS" AND DEFINED TBB_VERSION) - _detailed("# TBB_VERSION = ${TBB_VERSION}\n") - ENDIF() - IF(_feature MATCHES "MPI" AND DEFINED OMPI_VERSION) - _detailed("# OMPI_VERSION = ${OMPI_VERSION}\n") - ENDIF() - - # - # Print out ${_feature}_DIR: - # - IF(NOT "${${_feature}_DIR}" STREQUAL "") - _detailed("# ${_feature}_DIR = ${${_feature}_DIR}\n") - ENDIF() - - # - # Print the feature configuration: - # - FOREACH(_var2 - CXX_COMPILER C_COMPILER Fortran_COMPILER LIBRARIES INCLUDE_DIRS - USER_INCLUDE_DIRS DEFINITIONS USER_DEFINITIONS CXX_FLAGS - LINKER_FLAGS - ) - IF(DEFINED ${_feature}_${_var2}) - _detailed("# ${_feature}_${_var2} = ${${_feature}_${_var2}}\n") - ENDIF() - ENDFOREACH() - ELSEIF(FEATURE_${_feature}_BUNDLED_CONFIGURED) - IF(DEAL_II_FORCE_BUNDLED_${_feature}) _both("# ${_var} set up with bundled packages (forced)\n") ELSE() @@ -186,6 +170,47 @@ FOREACH(_var ${_features}) ELSE() _both("# ${_var} = ${${_var}}\n") ENDIF() + + # + # Print out version number: + # + IF(DEFINED ${_feature}_VERSION) + _detailed("# ${_feature}_VERSION = ${${_feature}_VERSION}\n") + ENDIF() + + # + # Special version numbers: + # + IF(_feature MATCHES "THREADS" AND DEFINED TBB_VERSION) + _detailed("# TBB_VERSION = ${TBB_VERSION}\n") + ENDIF() + IF(_feature MATCHES "MPI" AND DEFINED OMPI_VERSION) + _detailed("# OMPI_VERSION = ${OMPI_VERSION}\n") + ENDIF() + + # + # Print out ${_feature}_DIR: + # + IF(NOT "${${_feature}_DIR}" STREQUAL "") + _detailed("# ${_feature}_DIR = ${${_feature}_DIR}\n") + ENDIF() + + # + # Print the feature configuration: + # + FOREACH(_var2 + C_COMPILER CXX_COMPILER Fortran_COMPILER + CXX_FLAGS CXX_FLAGS_RELEASE CXX_FLAGS_DEBUG + DEFINITIONS DEFINITIONS_RELEASE DEFINITIONS_DEBUG + USER_DEFINITIONS USER_DEFINITIONS_RELEASE USER_DEFINITIONS_DEBUG + LINKER_FLAGS LINKER_FLAGS_RELEASE LINKER_FLAGS_DEBUG + INCLUDE_DIRS USER_INCLUDE_DIRS BUNDLED_INCLUDE_DIRS + LIBRARIES LIBRARIES_RELEASE LIBRARIES_DEBUG + ) + IF(DEFINED ${_feature}_${_var2}) + _detailed("# ${_feature}_${_var2} = ${${_feature}_${_var2}}\n") + ENDIF() + ENDFOREACH() ELSE() # FEATURE is disabled _both("# ( ${_var} = ${${_var}} )\n") diff --git a/deal.II/doc/developers/cmake-internals.html b/deal.II/doc/developers/cmake-internals.html index 3517b168bb..48146dc0c2 100644 --- a/deal.II/doc/developers/cmake-internals.html +++ b/deal.II/doc/developers/cmake-internals.html @@ -343,18 +343,19 @@ RESET_CMAKE_REQUIRED() FATAL_ERROR must be avoided (the only exception is the REQUIRED keyword).
  • - If successful, the following uncached variables might be set: - + If the feature is successfully found, a subset of the following + uncached variables might be set: 
     FEATURE_FOUND
-FEATURE_LIBRARIES
+FEATURE_LIBRARIES (with optimized, debug, release keywords)
+FEATURE_LIBRARIES(_DEBUG|_RELEASE)
 FEATURE_INCLUDE_DIRS
-FEATURE_LINKER_FLAGS
+FEATURE_LINKER_FLAGS(|_DEBUG|_RELEASE)
+FEATURE_CXX_FLAGS(|_DEBUG|_RELEASE)
+FEATURE_DEFINITIONS(|_DEBUG|_RELEASE)
 
 FEATURE_VERSION
-FEATURE_VERSION_MAJOR
-FEATURE_VERSION_MINOR
-FEATURE_VERSION_SUBMINOR
+FEATURE_VERSION(_MAJOR|_MINOR|_SUBMINOR)
    There are obviously valid exceptions from this rule, though. @@ -363,6 +364,11 @@ There are obviously valid exceptions from this rule, though. "global" variables prefixed by FEATURE_ may be altered. Do not set DEAL_II_* or CMAKE_* variables directly! + +
  • + The find module must define a macro FEATURE_CLEAR that + unsets all cached variables, so that a subsequent call to the find + module starts a completely fresh features search.
  • A hint with FEATURE_DIR can be set up for convenience. It is best to start the Find module by @@ -400,11 +406,15 @@ SET(FEATURE_DIR "" CACHE PATH "An optional hint to a FEATURE directory") module is used to determine whether an external dependency can be resolved or not. Depending on the current state of DEAL_II_WITH_<FEATURE> (see - here) the variables + here) the + configuration variables 
     FEATURE_LIBRARIES
-FEATURE_INCLUDE_DIRS
-FEATURE_LINKER_FLAGS
+FEATURE_LIBRARIES(|_DEBUG|_RELEASE)
+FEATURE_(|USER_|BUNDLED_)INCLUDE_DIRS
+FEATURE_LINKER_FLAGS(|_DEBUG|_RELEASE)
+FEATURE_CXX_FLAGS(|_DEBUG|_RELEASE)
+FEATURE_DEFINITIONS(|_DEBUG|_RELEASE)
    are appended to the set of global variables and DEAL_II_WITH_<FEATURE> is set to @@ -458,7 +468,7 @@ FEATURE_<FEATURE>_ERROR_MESSAGE() (macro)
  • - In ./bundled/CMakeLists.txt: + In ./bundled/configure_bundled.cmake: 
     FEATURE_<FEATURE>_HAVE_BUNDLED         (a boolean)
   - which should either be set to TRUE if all necessary libraries of the
@@ -492,6 +502,15 @@ DEAL_II_FORCE_BUNDLED_<FEATURE>        (an option)
   LIST(APPEND ...), flags with ADD_FLAGS(...)
   (or if it is necessary to guard them with
   ENABLE_IF_SUPPORTED(...).)
+
    
+
    
+  Feature configuration must not be added directly to this variables but
+    to corresponding <FEATURE>_* variables, instead.
+  Feature configuration variables get appended to the below list of global
+  configuration variables automatically.
+
    
+
+
   
      
     
    • 
       The general (internal) logic for variables applies:
@@ -503,27 +522,32 @@ DEAL_II_FORCE_BUNDLED_<FEATURE>        (an option)
       
    
 
     
  • 
-      For internal use, for setting necessary linker flags for the deal.II library:
+      For internal and external use, used to keep track of external
+      libraries, the deal.II library and user
+      programs have to be linked against:
       
      
-        
    •  DEAL_II_LINKER_FLAGS
-        
    •  DEAL_II_LINKER_FLAGS_DEBUG
-        
    •  DEAL_II_LINKER_FLAGS_RELEASE
+        
    •  DEAL_II_LIBRARIES
+        
    •  DEAL_II_LIBRARIES_DEBUG
+        
    •  DEAL_II_LIBRARIES_RELEASE
       
    
 
     
  • 
-      For internal use, for setting necessary compiler flags, e.g.
-      -std=c++11 (if available):
+      For internal use, for setting necessary include dirs for the compilation of the
+      deal.II library:
       
      
-        
    •  DEAL_II_CXX_FLAGS
-        
    •  DEAL_II_CXX_FLAGS_DEBUG
-        
    •  DEAL_II_CXX_FLAGS_RELEASE
+        
    •  DEAL_II_INCLUDE_DIRS
       
    
-
     
  • 
-      For internal use, for setting necessary include dirs for the compilation of the
-      deal.II library:
+      Used to keep track of external include dirs, necessary for the
+      compilation of user programs:
       
      
-        
    •  INCLUDE_DIRECTORIES(...)
+        
    •  DEAL_II_USER_INCLUDE_DIRS
+      
    
+    
  • 
+      Include dirs from bundled packages necessary for the compilation fo
+      the library and user projects out of the build directory:
+      
      
+        
    •  DEAL_II_BUNDLED_INCLUDE_DIRS
       
    
 
     
  • 
@@ -535,17 +559,6 @@ DEAL_II_FORCE_BUNDLED_<FEATURE>        (an option)
         
  •  DEAL_II_DEFINITIONS_DEBUG
         
  •  DEAL_II_DEFINITIONS_RELEASE
       
-
-    
  • 
-      For internal and external use, used to keep track of external
-      libraries, the deal.II library and user
-      programs have to be linked against:
-      
      
-        
    •  DEAL_II_EXTERNAL_LIBRARIES
-        
    •  DEAL_II_EXTERNAL_LIBRARIES_DEBUG
-        
    •  DEAL_II_EXTERNAL_LIBRARIES_RELEASE
-      
    
-
     
  • 
       For external use, used to keep track of external preprocessor
       definitions, necessary for the compilation of user programs:
@@ -556,11 +569,22 @@ DEAL_II_FORCE_BUNDLED_<FEATURE>        (an option)
       
 
     
  • 
-      Used to keep track of external include dirs, necessary for the
-      compilation of user programs:
+      For internal and external use, for setting necessary compiler flags,
+      e.g. -std=c++11 (if available):
       
      
-        
    •  DEAL_II_USER_INCLUDE_DIRS
+        
    •  DEAL_II_CXX_FLAGS
+        
    •  DEAL_II_CXX_FLAGS_DEBUG
+        
    •  DEAL_II_CXX_FLAGS_RELEASE
       
    
+
+    
  • 
+      For internal use, for setting necessary linker flags for the deal.II library:
+      
      
+        
    •  DEAL_II_LINKER_FLAGS
+        
    •  DEAL_II_LINKER_FLAGS_DEBUG
+        
    •  DEAL_II_LINKER_FLAGS_RELEASE
+      
    
+
   
 
    
 
diff --git a/deal.II/doc/doxygen/headers/glossary.h b/deal.II/doc/doxygen/headers/glossary.h
index 2e3fda1ce7..a110179809 100644
--- a/deal.II/doc/doxygen/headers/glossary.h
+++ b/deal.II/doc/doxygen/headers/glossary.h
@@ -632,7 +632,7 @@
  * is a vector of expension coefficients. Because we don't know their values
  * yet (we will compute them as the solution of a linear or nonlinear system),
  * they are called "unknowns" or "degrees of freedom". The second meaning of
- * the term con be explained as follows: A mathematical description of finite
+ * the term can be explained as follows: A mathematical description of finite
  * element problem is often to say that we are looking for a finite
  * dimensional function $u_h \in V_h$ that satisfies some set of equations
  * (e.g. $a(u_h,\varphi_h)=(f,\varphi_h)$ for all test functions $\varphi_h\in
diff --git a/deal.II/doc/news/changes.h b/deal.II/doc/news/changes.h
index 73d5cb20e9..6a14027983 100644
--- a/deal.II/doc/news/changes.h
+++ b/deal.II/doc/news/changes.h
@@ -15,7 +15,7 @@
 // ---------------------------------------------------------------------
 
 /**
-// * @page changes_after_8_1 Changes after Version 8.1
+@page changes_after_8_1 Changes after Version 8.1
 
 
    
 This is the list of changes made after the release of
@@ -40,6 +40,28 @@ inconvenience this causes.
 
    
 
 
      
+  
    1.  Changed: The various classes generating graphical output, such
+  as DataOut or DataOutStack, are all derived from a common interface
+  class DataOutInterface which, in turn was derived from DataOutBase
+  through private inheritance. Because we frequently also
+  access the (public) members of this private base class this has tripped
+  up most every compiler we know of at one point or another. Furthermore,
+  because DataOutBase was a class that only defined static member functions
+  and had not member variables, there was really no reason for this
+  construct.
+  
      
+  For these reasons, DataOutBase is now just a regular namespace and the
+  inheritance is gone. For the most part, this should not lead to any
+  incompatibilities except in cases where you accessed members of
+  DataOutBase through their derived classes. For example, it was possible
+  to write DataOut@<2@>::Patch@<2,2@> even though the
+  Patch class is actually declared in DataOutBase. Since
+  the inheritance is now gone, this is no longer possible and one
+  actually has to write DataOutBase::Patch instead. Using this form
+  turns out to be compatible also with older versions of deal.II.
+  
      
+  (Wolfgang Bangerth, 2014/02/01)
+  
      2. 
 
    
 
 
@@ -102,8 +124,60 @@ inconvenience this causes.
 
    Specific improvements
    
 
 
      
+  
    1. Changed: DerivativeApproximation used to be a class that only had
+  static members. It is now a namespace.
+  
      
+  (Wolfgang Bangerth, 2014/02/08)
+
+  
    2. New: ThreadLocalStorage::clear() clears out all objects allocated on the
+  current and all other threads.
+  
      
+  (Wolfgang Bangerth, 2014/02/06)
+
+  
    3. Fixed: A configuration error on Debian Testing where accidentally a
+  non-pic libSuiteSparse_config.a was picked up when building a shared
+  library up resulting in a link error.
+  
      
+  (Matthias Maier, 2014/02/04)
+
+  
    4.  Changed: GridTools::transform() can now deal with meshes with hanging nodes.
+  
      
+  (Timo Heister, 2014/02/04)
+  
      5. 
+
+  
    5. Fixed: Calling FEValuesViews::Vector::get_function_curls() computed
+  wrong results in some cases (see https://code.google.com/p/dealii/issues/detail?id=182).
+  This is now fixed.
+  
      
+  (Christoph Heiniger, Wolfgang Bangerth, 2014/02/03)
+
+  
    6. Added: The class LAPACKFullMatrix now implements interfaces to
+  matrix-matrix multiplication. Also, LAPACKFullMatrix::apply_lu_factorization
+  now also operates on multiple right hand sides in form of another
+  LAPACKFullMatrix.
+  
      
+  (Martin Kronbichler, 2014/02/03)
+
+  
    7. Added: A sanity check for the full link interface at configure time.
+  Hopefully this prevents some people from compiling the whole library just
+  to hit a link error.
+  
      
+  (Matthias Maier, 2014/02/01)
+
+  
    8. Fixed: The build system does no longer record full paths to system
+  libraries but uses the appropriate short names instead.
+  
      
+  (Matthias Maier, 2014/02/01)
+
+  
    9. Reworked: External feature setup. Disabling a feature now cleans up
+  associated internal, cached variables. A per-feature linkage test now spots
+  common linking inconsistencies early in the configuration stage (and not
+  just after a complete compilation).
+  
      
+  (Matthias Maier, 2014/02/01)
+
   
    10. New/fixed: The ParameterHandler::print_parameters_section
-  method not worked for XML output. There is now a flag
+  method did not work for XML output. There is now a flag
   include_top_level_elements which prints all higher
   subsection elements, default is false.
   For XML output setting this flag to true is required
diff --git a/deal.II/doc/publications/index.html b/deal.II/doc/publications/index.html
index f33462423a..3dc872d59a 100644
--- a/deal.II/doc/publications/index.html
+++ b/deal.II/doc/publications/index.html
@@ -315,6 +315,15 @@ Pressurized Fractures
 	  
      
 	  Comput. Methods Appl. Mech. Engrg., vol. 271, pp. 69-85, 2014.
         
      11. 
+
+	
    11.  J. Willems
+ 	  
      
+	  Robust Multilevel Methods for General Symmetric Positive Definite Operators
+	  
+	  
      
+	  SIAM J. Numer. Anal.  52  (2014),  no. 1, 103-124.
+        
      12. 
+
       
    
 
 
@@ -417,7 +426,7 @@ Pressurized Fractures
 	  
    
 	  Adaptive Finite Element Methods for Elliptic Problems with Discontinuous Coefficients
 	  
    
-	  SIAM J. Numer. Anal.  51  (2013),  no. 6, 3106--3134.
+	  SIAM J. Numer. Anal.  51  (2013),  no. 6, 3106-3134.
 	
    • 
 
 	
  •  A. Bonito, R. Glowinski
@@ -454,7 +463,7 @@ Pressurized Fractures
 	  
    
 	  Time-discrete higher order ALE formulations: Stability
 	  
    
-	  SIAM J. Numer. Anal., 51(1), 577--608, 2013.
+	  SIAM J. Numer. Anal., 51(1), 577-608, 2013.
 	
    • 
 
 	
  •  A. Bonito, J. E. Pasciak
diff --git a/deal.II/examples/step-13/step-13.cc b/deal.II/examples/step-13/step-13.cc
index cd1f9525b7..189f1f7077 100644
--- a/deal.II/examples/step-13/step-13.cc
+++ b/deal.II/examples/step-13/step-13.cc
@@ -1,7 +1,7 @@
 /* ---------------------------------------------------------------------
  * $Id$
  *
- * Copyright (C) 2001 - 2013 by the deal.II authors
+ * Copyright (C) 2001 - 2014 by the deal.II authors
  *
  * This file is part of the deal.II library.
  *
@@ -343,15 +343,14 @@ namespace Step13
     // program we shall generate output (from this we will then also generate
     // the suffix of the filename to which we write).
     //
-    // Regarding the output format, the DataOutInterface class
-    // (which is a base class of DataOut through which we will
-    // access its fields) provides an enumeration field
-    // OutputFormat, which lists names for all supported output
+    // Regarding the output format, the DataOutBase namespace
+    // provides an enumeration field
+    // DataOutBase::OutputFormat which lists names for all supported output
     // formats. At the time of writing of this program, the supported graphics
     // formats are represented by the enum values ucd,
     // gnuplot, povray, eps,
     // gmv, tecplot, tecplot_binary,
-    // dx, and vtk, but this list will certainly
+    // dx, vtk, etc, but this list will certainly
     // grow over time. Now, within various functions of that base class, you
     // can use values of this type to get information about these graphics
     // formats (for example the default suffix used for files of each format),
@@ -372,21 +371,21 @@ namespace Step13
     class SolutionOutput : public EvaluationBase
     {
     public:
-      SolutionOutput (const std::string                         &output_name_base,
-                      const typename DataOut::OutputFormat  output_format);
+      SolutionOutput (const std::string               &output_name_base,
+                      const DataOutBase::OutputFormat  output_format);
 
       virtual void operator () (const DoFHandler &dof_handler,
                                 const Vector  &solution) const;
     private:
-      const std::string                         output_name_base;
-      const typename DataOut::OutputFormat output_format;
+      const std::string               output_name_base;
+      const DataOutBase::OutputFormat output_format;
     };
 
 
     template 
     SolutionOutput::
-    SolutionOutput (const std::string                         &output_name_base,
-                    const typename DataOut::OutputFormat  output_format)
+    SolutionOutput (const std::string               &output_name_base,
+                    const DataOutBase::OutputFormat  output_format)
       :
       output_name_base (output_name_base),
       output_format (output_format)
@@ -396,7 +395,7 @@ namespace Step13
     // After the description above, the function generating the actual output
     // is now relatively straightforward. The only particularly interesting
     // feature over previous example programs is the use of the
-    // DataOut::default_suffix function, returning the usual
+    // DataOutBase::default_suffix function, returning the usual
     // suffix for files of a given format (e.g. ".eps" for encapsulated
     // postscript files, ".gnuplot" for Gnuplot files), and of the generic
     // DataOut::write function with a second argument, which
@@ -1489,7 +1488,7 @@ namespace Step13
     // Also generate an evaluator which writes out the solution:
     Evaluation::SolutionOutput
     postprocessor2 (std::string("solution-")+solver_name,
-                    DataOut::gnuplot);
+                    DataOutBase::gnuplot);
 
     // Take these two evaluation objects and put them in a list...
     std::list *> postprocessor_list;
diff --git a/deal.II/examples/step-14/step-14.cc b/deal.II/examples/step-14/step-14.cc
index 23590f9d8b..bcb7d493ed 100644
--- a/deal.II/examples/step-14/step-14.cc
+++ b/deal.II/examples/step-14/step-14.cc
@@ -1,7 +1,7 @@
 /* ---------------------------------------------------------------------
  * $Id$
  *
- * Copyright (C) 2002 - 2013 by the deal.II authors
+ * Copyright (C) 2002 - 2014 by the deal.II authors
  *
  * This file is part of the deal.II library.
  *
@@ -875,7 +875,7 @@ namespace Step14
                << std::ends;
 
       std::ofstream out (filename.str().c_str());
-      data_out.write (out, DataOut::gnuplot);
+      data_out.write (out, DataOutBase::gnuplot);
     }
 
 
@@ -2399,7 +2399,7 @@ namespace Step14
                << std::ends;
 
       std::ofstream out (filename.str().c_str());
-      data_out.write (out, DataOut::gnuplot);
+      data_out.write (out, DataOutBase::gnuplot);
     }
 
 
diff --git a/deal.II/examples/step-2/doc/intro.dox b/deal.II/examples/step-2/doc/intro.dox
index 3c2412609a..61b5a33244 100644
--- a/deal.II/examples/step-2/doc/intro.dox
+++ b/deal.II/examples/step-2/doc/intro.dox
@@ -16,7 +16,7 @@ function, in the form $u_h(\mathbf x) = \sum_{j=0}^{N-1} U_j \varphi_j(\mathbf
 x)$. Here, $U_j$ is a vector of expansion coefficients. Because we don't know
 their values yet (we will compute them as the solution of a linear or
 nonlinear system), they are called "unknowns" or "degrees of freedom". The
-second meaning of the term con be explained as follows: A mathematical
+second meaning of the term can be explained as follows: A mathematical
 description of finite element problem is often to say that we are looking for
 a finite dimensional function $u_h \in V_h$ that satisfies some set of equations
 (e.g. $a(u_h,\varphi_h)=(f,\varphi_h)$ for all test functions $\varphi_h\in
diff --git a/deal.II/examples/step-6/step-6.cc b/deal.II/examples/step-6/step-6.cc
index e3fca00b1e..52dda1eb45 100644
--- a/deal.II/examples/step-6/step-6.cc
+++ b/deal.II/examples/step-6/step-6.cc
@@ -273,7 +273,7 @@ Step6::~Step6 ()
 // The next function is setting up all the variables that describe the linear
 // finite element problem, such as the DoF handler, the matrices, and
 // vectors. The difference to what we did in step-5 is only that we now also
-// have to take care of handing node constraints. These constraints are
+// have to take care of hanging node constraints. These constraints are
 // handled almost transparently by the library, i.e. you only need to know
 // that they exist and how to get them, but you do not have to know how they
 // are formed or what exactly is done with them.
diff --git a/deal.II/include/deal.II/algorithms/newton.templates.h b/deal.II/include/deal.II/algorithms/newton.templates.h
index b1380d6e4e..16c6b74483 100644
--- a/deal.II/include/deal.II/algorithms/newton.templates.h
+++ b/deal.II/include/deal.II/algorithms/newton.templates.h
@@ -80,7 +80,17 @@ namespace Algorithms
     inverse_derivative->notify(e);
   }
 
-
+  
+  template 
+  double
+  Newton::threshold(const double thr)
+  {
+    const double t = assemble_threshold;
+    assemble_threshold = thr;
+    return t;
+  }
+  
+  
   template 
   void
   Newton::operator() (NamedData &out, const NamedData &in)
diff --git a/deal.II/include/deal.II/base/data_out_base.h b/deal.II/include/deal.II/base/data_out_base.h
index 0d9ee2bbf3..ea0a249a98 100644
--- a/deal.II/include/deal.II/base/data_out_base.h
+++ b/deal.II/include/deal.II/base/data_out_base.h
@@ -44,7 +44,6 @@ DEAL_II_NAMESPACE_OPEN
 
 class ParameterHandler;
 class XDMFEntry;
-class DataOutFilter;
 
 /**
  * This is a base class for output of data on meshes of very general
@@ -142,11 +141,9 @@ class DataOutFilter;
  *
  * 
    DataOutBaseInterface
    
  *
- * This class has an interface that is not usually called by a user
- * directly; also, it consists of static functions
- * only. Usually, derived classes will inherit this class
- * protected to hide this interface to the users of thes
- * classes.
+ * The members of this namespace are not usually called from user code
+ * directly. Rather, classes that use the functions declared here
+ * are typically derived from DataOutInterface.
  *
  * The interface of this class basically consists of the declaration of a data
  * type describing a patch and a bunch of functions taking a list of patches
@@ -216,9 +213,8 @@ class DataOutFilter;
  * @ingroup output
  * @author Wolfgang Bangerth, Guido Kanschat 1999, 2000, 2001, 2002, 2005, 2006.
  */
-class DataOutBase
+namespace DataOutBase
 {
-public:
   /**
    * Data structure describing a patch of data in dim space
    * dimensions.
@@ -1108,7 +1104,7 @@ public:
      * understand.
      */
     static const unsigned int format_version = 3;
-    
+
   private:
     /**
      * Dummy entry to suppress compiler warnings when copying an empty
@@ -1461,11 +1457,11 @@ public:
    * contrib/dx.
    */
   template 
-  static void write_dx (const std::vector > &patches,
-                        const std::vector          &data_names,
-                        const std::vector > &vector_data_ranges,
-                        const DXFlags                           &flags,
-                        std::ostream                            &out);
+  void write_dx (const std::vector > &patches,
+                 const std::vector          &data_names,
+                 const std::vector > &vector_data_ranges,
+                 const DXFlags                           &flags,
+                 std::ostream                            &out);
 
   /**
    * Write the given list of patches to the output stream in eps format.
@@ -1513,11 +1509,11 @@ public:
    * class. See there for more and detailed information.
    */
   template 
-  static void write_eps (const std::vector > &patches,
-                         const std::vector          &data_names,
-                         const std::vector > &vector_data_ranges,
-                         const EpsFlags                          &flags,
-                         std::ostream                            &out);
+  void write_eps (const std::vector > &patches,
+                  const std::vector          &data_names,
+                  const std::vector > &vector_data_ranges,
+                  const EpsFlags                          &flags,
+                  std::ostream                            &out);
 
   /**
    * Write the given list of patches to the output stream in
@@ -1530,11 +1526,11 @@ public:
    * space is interpolated to (bi-,tri-)linear elements.
    */
   template 
-  static void write_gmv (const std::vector > &patches,
-                         const std::vector          &data_names,
-                         const std::vector > &vector_data_ranges,
-                         const GmvFlags                          &flags,
-                         std::ostream                            &out);
+  void write_gmv (const std::vector > &patches,
+                  const std::vector          &data_names,
+                  const std::vector > &vector_data_ranges,
+                  const GmvFlags                          &flags,
+                  std::ostream                            &out);
 
   /**
    * Write the given list of patches to the output stream in gnuplot
@@ -1597,11 +1593,11 @@ public:
    * cut-surface are plotted.
    */
   template 
-  static void write_gnuplot (const std::vector > &patches,
-                             const std::vector          &data_names,
-                             const std::vector > &vector_data_ranges,
-                             const GnuplotFlags                      &flags,
-                             std::ostream                            &out);
+  void write_gnuplot (const std::vector > &patches,
+                      const std::vector          &data_names,
+                      const std::vector > &vector_data_ranges,
+                      const GnuplotFlags                      &flags,
+                      std::ostream                            &out);
 
   /**
    * Write the given list of patches to the output stream for the
@@ -1651,11 +1647,11 @@ public:
    * included in the povray options.
    */
   template 
-  static void write_povray (const std::vector > &patches,
-                            const std::vector          &data_names,
-                            const std::vector > &vector_data_ranges,
-                            const PovrayFlags                       &flags,
-                            std::ostream                            &out);
+  void write_povray (const std::vector > &patches,
+                     const std::vector          &data_names,
+                     const std::vector > &vector_data_ranges,
+                     const PovrayFlags                       &flags,
+                     std::ostream                            &out);
 
   /**
    * Write the given list of patches to the output stream in
@@ -1665,11 +1661,11 @@ public:
    * manuals.
    */
   template 
-  static void write_tecplot (const std::vector > &patches,
-                             const std::vector          &data_names,
-                             const std::vector > &vector_data_ranges,
-                             const TecplotFlags                      &flags,
-                             std::ostream                            &out);
+  void write_tecplot (const std::vector > &patches,
+                      const std::vector          &data_names,
+                      const std::vector > &vector_data_ranges,
+                      const TecplotFlags                      &flags,
+                      std::ostream                            &out);
 
   /**
    * Write the given list of patches to the output stream in
@@ -1693,7 +1689,7 @@ public:
    * manuals.
    */
   template 
-  static void write_tecplot_binary (
+  void write_tecplot_binary (
     const std::vector > &patches,
     const std::vector          &data_names,
     const std::vector > &vector_data_ranges,
@@ -1716,11 +1712,11 @@ public:
    * patch to the same value.
    */
   template 
-  static void write_ucd (const std::vector > &patches,
-                         const std::vector          &data_names,
-                         const std::vector > &vector_data_ranges,
-                         const UcdFlags                          &flags,
-                         std::ostream                            &out);
+  void write_ucd (const std::vector > &patches,
+                  const std::vector          &data_names,
+                  const std::vector > &vector_data_ranges,
+                  const UcdFlags                          &flags,
+                  std::ostream                            &out);
 
   /**
    * Write the given list of patches to the output stream in VTK
@@ -1742,11 +1738,11 @@ public:
    * latter file format instead, by using the write_vtu() function.
    */
   template 
-  static void write_vtk (const std::vector > &patches,
-                         const std::vector          &data_names,
-                         const std::vector > &vector_data_ranges,
-                         const VtkFlags                          &flags,
-                         std::ostream                            &out);
+  void write_vtk (const std::vector > &patches,
+                  const std::vector          &data_names,
+                  const std::vector > &vector_data_ranges,
+                  const VtkFlags                          &flags,
+                  std::ostream                            &out);
 
 
   /**
@@ -1773,11 +1769,11 @@ public:
    * The use of this function is explained in step-40.
    */
   template 
-  static void write_vtu (const std::vector > &patches,
-                         const std::vector          &data_names,
-                         const std::vector > &vector_data_ranges,
-                         const VtkFlags                          &flags,
-                         std::ostream                            &out);
+  void write_vtu (const std::vector > &patches,
+                  const std::vector          &data_names,
+                  const std::vector > &vector_data_ranges,
+                  const VtkFlags                          &flags,
+                  std::ostream                            &out);
 
   /**
    * This writes the header for the xml based vtu file format. This
@@ -1785,8 +1781,8 @@ public:
    * DataOutInterface::write_vtu_footer() and DataOutInterface::write_vtu_main()
    * by DataOutBase::write_vtu().
    */
-  static void write_vtu_header (std::ostream &out,
-                                const VtkFlags &flags);
+  void write_vtu_header (std::ostream &out,
+                         const VtkFlags &flags);
 
   /**
    * This writes the footer for the xml based vtu file format. This
@@ -1794,7 +1790,7 @@ public:
    * DataOutInterface::write_vtu_header() and DataOutInterface::write_vtu_main()
    * by DataOutBase::write_vtu().
    */
-  static void write_vtu_footer (std::ostream &out);
+  void write_vtu_footer (std::ostream &out);
 
   /**
    * This writes the main part for the xml based vtu file format. This
@@ -1803,11 +1799,11 @@ public:
    * by DataOutBase::write_vtu().
    */
   template 
-  static void write_vtu_main (const std::vector > &patches,
-                              const std::vector          &data_names,
-                              const std::vector > &vector_data_ranges,
-                              const VtkFlags                          &flags,
-                              std::ostream                            &out);
+  void write_vtu_main (const std::vector > &patches,
+                       const std::vector          &data_names,
+                       const std::vector > &vector_data_ranges,
+                       const VtkFlags                          &flags,
+                       std::ostream                            &out);
 
   /**
    * Write the given list of patches to the output stream in SVG format.
@@ -1827,15 +1823,15 @@ public:
    * the data values at the vertices taken from the specified data
    * vector. A colorbar can be drawn to encode the coloring.
    *
-   * @note Yet only implemented for two dimensions with an additional
-   * dimension reserved for data information.
+   * @note This function is so far only implemented for two dimensions
+   * with an additional dimension reserved for data information.
    */
-  template 
-  static void write_svg (const std::vector > &patches,
-                         const std::vector          &data_names,
-                         const std::vector > &vector_data_ranges,
-                         const SvgFlags                          &flags,
-                         std::ostream                            &out);
+  template 
+  void write_svg (const std::vector > &patches,
+                  const std::vector          &data_names,
+                  const std::vector > &vector_data_ranges,
+                  const SvgFlags                          &flags,
+                  std::ostream                            &out);
 
   /**
    * Write the given list of patches to the output stream in deal.II
@@ -1878,7 +1874,7 @@ public:
    * the ending .d2.
    */
   template 
-  static void write_deal_II_intermediate (
+  void write_deal_II_intermediate (
     const std::vector > &patches,
     const std::vector          &data_names,
     const std::vector > &vector_data_ranges,
@@ -1890,10 +1886,10 @@ public:
    * the mesh and solution values.
    */
   template 
-  static void write_hdf5_parallel (const std::vector > &patches,
-                                   const DataOutFilter &data_filter,
-                                   const std::string &filename,
-                                   MPI_Comm comm);
+  void write_hdf5_parallel (const std::vector > &patches,
+                            const DataOutFilter &data_filter,
+                            const std::string &filename,
+                            MPI_Comm comm);
 
   /**
    * Write the data in data_filter to HDF5 file(s). If write_mesh_file
@@ -1903,12 +1899,12 @@ public:
    * contain both mesh data and solution values.
    */
   template 
-  static void write_hdf5_parallel (const std::vector > &patches,
-                                   const DataOutFilter &data_filter,
-                                   const bool write_mesh_file,
-                                   const std::string &mesh_filename,
-                                   const std::string &solution_filename,
-                                   MPI_Comm comm);
+  void write_hdf5_parallel (const std::vector > &patches,
+                            const DataOutFilter &data_filter,
+                            const bool write_mesh_file,
+                            const std::string &mesh_filename,
+                            const std::string &solution_filename,
+                            MPI_Comm comm);
 
   /**
    * DataOutFilter is an intermediate data format that reduces the amount of
@@ -1917,10 +1913,10 @@ public:
    * see, for example, DataOutBase::write_hdf5_parallel().
    */
   template 
-  static void write_filtered_data (const std::vector > &patches,
-                                   const std::vector          &data_names,
-                                   const std::vector > &vector_data_ranges,
-                                   DataOutFilter &filtered_data);
+  void write_filtered_data (const std::vector > &patches,
+                            const std::vector          &data_names,
+                            const std::vector > &vector_data_ranges,
+                            DataOutFilter &filtered_data);
 
   /**
    * Given an input stream that contains data written by
@@ -1934,7 +1930,6 @@ public:
    * to either reset the stream to its previous position, or close and
    * reopen it.
    */
-  static
   std::pair
   determine_intermediate_format_dimensions (std::istream &input);
 
@@ -1943,9 +1938,7 @@ public:
    * string. If the string does not match any known format, an
    * exception is thrown.
    *
-   * Since this function does not need data from this object, it is
-   * static and can thus be called without creating an object of this
-   * class. Its main purpose is to allow a program to use any
+   * The main purpose of this function is to allow a program to use any
    * implemented output format without the need to extend the
    * program's parser each time a new format is implemented.
    *
@@ -1953,14 +1946,14 @@ public:
    * it to the ParameterHandler class, use the function
    * get_output_format_names().
    */
-  static OutputFormat parse_output_format (const std::string &format_name);
+  OutputFormat parse_output_format (const std::string &format_name);
 
   /**
    * Return a list of implemented output formats. The different names
    * are separated by vertical bar signs (`|') as used by the
    * ParameterHandler classes.
    */
-  static std::string get_output_format_names ();
+  std::string get_output_format_names ();
 
   /**
    * Provide a function which tells us which suffix a file with a
@@ -1981,17 +1974,7 @@ public:
    * 
  •  deal_II_intermediate: .d2.
    * 
    */
-  static std::string default_suffix (const OutputFormat output_format);
-
-  /**
-   * Determine an estimate for the memory consumption (in bytes) of
-   * this object. Since sometimes the size of objects can not be
-   * determined exactly (for example: what is the memory consumption
-   * of an STL std::map type with a certain number of
-   * elements?), this is only an estimate. however often quite close
-   * to the true value.
-   */
-  static std::size_t memory_consumption ();
+  std::string default_suffix (const OutputFormat output_format);
 
   /** @addtogroup Exceptions
    * @{ */
@@ -2020,151 +2003,13 @@ public:
                   << " for output");
 
   //@}
-private:
-  /**
-   * Write the coordinates of nodes in the desired format.
-   */
-  template 
-  static void write_nodes (const std::vector > &patches,
-                           STREAM &out);
-
-  /**
-   * Write the node numbers of a cell in the desired format.
-   */
-  template 
-  static void write_cells (const std::vector > &patches,
-                           STREAM &out);
-
-  /**
-   * Write data in the desired format.
-   */
-  template 
-  static void write_data (const std::vector > &patches,
-                          const unsigned int n_data_sets,
-                          const bool double_precision,
-                          STREAM &out);
-
-
-  /**
-   * This function projects a three-dimensional point (Point<3> point)
-   * onto a two-dimensional image plane, specified by the position of
-   * the camera viewing system (Point<3> camera_position), camera
-   * direction (Point<3> camera_position), camera horizontal (Point<3>
-   * camera_horizontal, necessary for the correct alignment of the
-   * later images), and the focus of the camera (float camera_focus).
-   *
-   * For SVG output.
-   */
-  static Point<2> svg_project_point(Point<3> point,
-                                    Point<3> camera_position,
-                                    Point<3> camera_direction,
-                                    Point<3> camera_horizontal,
-                                    float camera_focus);
-  /**
-   * Function to compute the gradient parameters for a triangle with
-   * given values for the vertices.
-   *
-   * Used for svg output.
-   */
-  static Point<6> svg_get_gradient_parameters(Point<3> points[]);
-
-  /**
-   * Class holding the data of one cell of a patch in two space
-   * dimensions for output. It is the projection of a cell in
-   * three-dimensional space (two coordinates, one height value) to
-   * the direction of sight.
-   */
-  class SvgCell
-  {
-  public:
-
-    // Center of the cell (three-dimensional)
-    Point<3> center;
-
-    /**
-     * Vector of vertices of this cell (three-dimensional)
-     */
-    Point<3> vertices[4];
-
-    /**
-     * Depth into the picture, which is defined as the distance from
-     * an observer at an the origin in direction of the line of sight.
-     */
-    float depth;
-
-    /**
-     * Vector of vertices of this cell (projected, two-dimensional).
-     */
-    Point<2> projected_vertices[4];
-
-    // Center of the cell (projected, two-dimensional)
-    Point<2> projected_center;
-
-    /**
-     * Comparison operator for sorting.
-     */
-    bool operator < (const SvgCell &) const;
-  };
-
-
-  /**
-   * Class holding the data of one cell of a patch in two space
-   * dimensions for output. It is the projection of a cell in
-   * three-dimensional space (two coordinates, one height value) to
-   * the direction of sight.
-   */
-  class EpsCell2d
-  {
-  public:
-
-    /**
-     * Vector of vertices of this cell.
-     */
-    Point<2> vertices[4];
-
-    /**
-     * Data value from which the actual colors will be computed by the
-     * colorization function stated in the EpsFlags class.
-     */
-    float color_value;
-
-    /**
-     * Depth into the picture, which is defined as the distance from
-     * an observer at an the origin in direction of the line of sight.
-     */
-    float depth;
-
-    /**
-     * Comparison operator for sorting.
-     */
-    bool operator < (const EpsCell2d &) const;
-  };
-
-
-  /**
-   * This is a helper function for the write_gmv() function. There,
-   * the data in the patches needs to be copied around as output is
-   * one variable globally at a time, rather than all data on each
-   * vertex at a time. This copying around can be done detached from
-   * the main thread, and is thus moved into this separate function.
-   *
-   * Note that because of the similarity of the formats, this function
-   * is also used by the Vtk and Tecplot output functions.
-   */
-  template 
-  static void
-  write_gmv_reorder_data_vectors (const std::vector > &patches,
-                                  Table<2,double>                         &data_vectors);
-
-
-
-};
+}
 
 
 
 
 /**
- * This class is the interface to the DataOutBase class, as already its name
+ * This class is the interface to the functions in the DataOutBase namespace, as already its name
  * might suggest. It does not offer much functionality apart from a way to
  * access the implemented formats and a way to dynamically dispatch what output
  * format to chose.
@@ -2278,36 +2123,9 @@ private:
  * @author Wolfgang Bangerth, 1999
  */
 template 
-class DataOutInterface : private DataOutBase
+class DataOutInterface
 {
 public:
-  /*
-   * Import a few names that were
-   * previously in this class and have then
-   * moved to the base class. Since the
-   * base class is inherited from
-   * privately, we need to re-import these
-   * symbols to make sure that references
-   * to DataOutInterface::XXX
-   * remain valid.
-   */
-  using DataOutBase::OutputFormat;
-  using DataOutBase::default_format;
-  using DataOutBase::dx;
-  using DataOutBase::gnuplot;
-  using DataOutBase::povray;
-  using DataOutBase::eps;
-  using DataOutBase::tecplot;
-  using DataOutBase::tecplot_binary;
-  using DataOutBase::vtk;
-  using DataOutBase::vtu;
-  using DataOutBase::deal_II_intermediate;
-  using DataOutBase::parse_output_format;
-  using DataOutBase::get_output_format_names;
-  using DataOutBase::determine_intermediate_format_dimensions;
-
-  using DataOutBase::Patch;
-  
   /**
    * Constructor.
    */
@@ -2630,7 +2448,7 @@ public:
    * the mesh and solution data were written to a single file. See
    * write_xdmf_file() for an example of usage.
    */
-  XDMFEntry create_xdmf_entry (const DataOutFilter &data_filter,
+  XDMFEntry create_xdmf_entry (const DataOutBase::DataOutFilter &data_filter,
                                const std::string &h5_filename,
                                const double cur_time,
                                MPI_Comm comm) const;
@@ -2640,7 +2458,7 @@ public:
    * the mesh and solution data were written to separate files. See
    * write_xdmf_file() for an example of usage.
    */
-  XDMFEntry create_xdmf_entry (const DataOutFilter &data_filter,
+  XDMFEntry create_xdmf_entry (const DataOutBase::DataOutFilter &data_filter,
                                const std::string &h5_mesh_filename,
                                const std::string &h5_solution_filename,
                                const double cur_time,
@@ -2674,7 +2492,8 @@ public:
    * single HDF5 file containing both the mesh and solution values.
   @deprecated: use write_hdf5_parallel(DataOutFilter, ...) instead
    */
-  void write_hdf5_parallel (const std::string &filename, MPI_Comm comm) const DEAL_II_DEPRECATED;
+  void write_hdf5_parallel (const std::string &filename,
+                            MPI_Comm comm) const DEAL_II_DEPRECATED;
 
   /**
    * Write the data in data_filter to a single HDF5 file containing both
@@ -2689,7 +2508,8 @@ public:
    * data_out.write_hdf5_parallel(data_filter, "solution.h5", MPI_COMM_WORLD);
    * @endcode
    */
-  void write_hdf5_parallel (const DataOutFilter &data_filter, const std::string &filename, MPI_Comm comm) const;
+  void write_hdf5_parallel (const DataOutBase::DataOutFilter &data_filter,
+                            const std::string &filename, MPI_Comm comm) const;
 
   /**
    * Write the data in data_filter to HDF5 file(s). If write_mesh_file
@@ -2698,7 +2518,8 @@ public:
    * is true and the filenames are the same, the resulting file will
    * contain both mesh data and solution values.
    */
-  void write_hdf5_parallel (const DataOutFilter &data_filter, const bool write_mesh_file, const std::string &mesh_filename, const std::string &solution_filename, MPI_Comm comm) const;
+  void write_hdf5_parallel (const DataOutBase::DataOutFilter &data_filter,
+                            const bool write_mesh_file, const std::string &mesh_filename, const std::string &solution_filename, MPI_Comm comm) const;
 
   /**
    * DataOutFilter is an intermediate data format that reduces the amount of
@@ -2706,7 +2527,7 @@ public:
    * can then later be used again to write data in a concrete file format;
    * see, for example, DataOutBase::write_hdf5_parallel().
    */
-  void write_filtered_data (DataOutFilter &filtered_data) const;
+  void write_filtered_data (DataOutBase::DataOutFilter &filtered_data) const;
 
 
   /**
@@ -2724,64 +2545,64 @@ public:
    * format is default_format.
    */
   void write (std::ostream       &out,
-              const OutputFormat  output_format = default_format) const;
+              const DataOutBase::OutputFormat  output_format = DataOutBase::default_format) const;
 
   /**
    * Set the default format. The value set here is used anytime,
    * output for format default_format is requested.
    */
-  void set_default_format (const OutputFormat default_format);
+  void set_default_format (const DataOutBase::OutputFormat default_format);
 
   /**
    * Set the flags to be used for output in OpenDX format.
    */
-  void set_flags (const DXFlags &dx_flags);
+  void set_flags (const DataOutBase::DXFlags &dx_flags);
 
   /**
    * Set the flags to be used for output in UCD format.
    */
-  void set_flags (const UcdFlags &ucd_flags);
+  void set_flags (const DataOutBase::UcdFlags &ucd_flags);
 
   /**
    * Set the flags to be used for output in GNUPLOT format.
    */
-  void set_flags (const GnuplotFlags &gnuplot_flags);
+  void set_flags (const DataOutBase::GnuplotFlags &gnuplot_flags);
 
   /**
    * Set the flags to be used for output in POVRAY format.
    */
-  void set_flags (const PovrayFlags &povray_flags);
+  void set_flags (const DataOutBase::PovrayFlags &povray_flags);
 
   /**
    * Set the flags to be used for output in EPS output.
    */
-  void set_flags (const EpsFlags &eps_flags);
+  void set_flags (const DataOutBase::EpsFlags &eps_flags);
 
   /**
    * Set the flags to be used for output in GMV format.
    */
-  void set_flags (const GmvFlags &gmv_flags);
+  void set_flags (const DataOutBase::GmvFlags &gmv_flags);
 
   /**
    * Set the flags to be used for output in Tecplot format.
    */
-  void set_flags (const TecplotFlags &tecplot_flags);
+  void set_flags (const DataOutBase::TecplotFlags &tecplot_flags);
 
   /**
    * Set the flags to be used for output in VTK format.
    */
-  void set_flags (const VtkFlags &vtk_flags);
+  void set_flags (const DataOutBase::VtkFlags &vtk_flags);
 
   /**
    * Set the flags to be used for output in SVG format.
    */
-  void set_flags (const SvgFlags &svg_flags);
+  void set_flags (const DataOutBase::SvgFlags &svg_flags);
 
   /**
    * Set the flags to be used for output in deal.II intermediate
    * format.
    */
-  void set_flags (const Deal_II_IntermediateFlags &deal_II_intermediate_flags);
+  void set_flags (const DataOutBase::Deal_II_IntermediateFlags &deal_II_intermediate_flags);
 
   /**
    * A function that returns the same string as the respective
@@ -2792,7 +2613,7 @@ public:
    * calling this function.
    */
   std::string
-  default_suffix (const OutputFormat output_format = default_format) const;
+  default_suffix (const DataOutBase::OutputFormat output_format = DataOutBase::default_format) const;
 
   /**
    * Declare parameters for all output formats by declaring
@@ -2840,7 +2661,7 @@ protected:
    * functions to know what they shall print.
    */
   virtual
-  const std::vector > &
+  const std::vector > &
   get_patches () const = 0;
 
   /**
@@ -2887,73 +2708,73 @@ private:
    * default_format is requested. It can be changed by the
    * set_format function or in a parameter file.
    */
-  OutputFormat default_fmt;
+  DataOutBase::OutputFormat default_fmt;
 
   /**
    * Flags to be used upon output of OpenDX data. Can be changed by
    * using the set_flags function.
    */
-  DXFlags     dx_flags;
+  DataOutBase::DXFlags     dx_flags;
 
   /**
    * Flags to be used upon output of UCD data. Can be changed by using
    * the set_flags function.
    */
-  UcdFlags     ucd_flags;
+  DataOutBase::UcdFlags     ucd_flags;
 
   /**
    * Flags to be used upon output of GNUPLOT data. Can be changed by
    * using the set_flags function.
    */
-  GnuplotFlags gnuplot_flags;
+  DataOutBase::GnuplotFlags gnuplot_flags;
 
   /**
    * Flags to be used upon output of POVRAY data. Can be changed by
    * using the set_flags function.
    */
-  PovrayFlags povray_flags;
+  DataOutBase::PovrayFlags povray_flags;
 
   /**
    * Flags to be used upon output of EPS data in one space
    * dimension. Can be changed by using the set_flags
    * function.
    */
-  EpsFlags     eps_flags;
+  DataOutBase::EpsFlags     eps_flags;
 
   /**
    * Flags to be used upon output of gmv data in one space
    * dimension. Can be changed by using the set_flags
    * function.
    */
-  GmvFlags     gmv_flags;
+  DataOutBase::GmvFlags     gmv_flags;
 
   /**
    * Flags to be used upon output of Tecplot data in one space
    * dimension. Can be changed by using the set_flags
    * function.
    */
-  TecplotFlags tecplot_flags;
+  DataOutBase::TecplotFlags tecplot_flags;
 
   /**
    * Flags to be used upon output of vtk data in one space
    * dimension. Can be changed by using the set_flags
    * function.
    */
-  VtkFlags     vtk_flags;
+  DataOutBase::VtkFlags     vtk_flags;
 
   /**
    * Flags to be used upon output of svg data in one space
    * dimension. Can be changed by using the set_flags
    * function.
    */
-  SvgFlags     svg_flags;
+  DataOutBase::SvgFlags     svg_flags;
 
   /**
    * Flags to be used upon output of deal.II intermediate data in one
    * space dimension. Can be changed by using the set_flags
    * function.
    */
-  Deal_II_IntermediateFlags     deal_II_intermediate_flags;
+  DataOutBase::Deal_II_IntermediateFlags     deal_II_intermediate_flags;
 };
 
 
@@ -3077,7 +2898,7 @@ protected:
    * It returns the patches as read the last time a stream was given
    * to the read() function.
    */
-  virtual const std::vector > &
+  virtual const std::vector > &
   get_patches () const;
 
   /**
@@ -3117,7 +2938,7 @@ private:
    * Arrays holding the set of patches as well as the names of output
    * variables, all of which we read from an input stream.
    */
-  std::vector > patches;
+  std::vector > patches;
   std::vector dataset_names;
 
   /**
@@ -3200,45 +3021,47 @@ public:
 
 /* -------------------- inline functions ------------------- */
 
-inline
-bool
-DataOutBase::EpsFlags::RgbValues::is_grey () const
+namespace DataOutBase
 {
-  return (red == green) && (red == blue);
-}
-
+  inline
+  bool
+  EpsFlags::RgbValues::is_grey () const
+  {
+    return (red == green) && (red == blue);
+  }
 
-/* -------------------- template functions ------------------- */
 
-/**
- * Output operator for an object of type
- * DataOutBase::Patch. This operator dumps the intermediate
- * graphics format represented by the patch data structure. It may
- * later be converted into regular formats for a number of graphics
- * programs.
- *
- * @author Wolfgang Bangerth, 2005
- */
-template 
-std::ostream &
-operator << (std::ostream                           &out,
-             const DataOutBase::Patch &patch);
+  /* -------------------- template functions ------------------- */
 
+  /**
+   * Output operator for an object of type
+   * DataOutBase::Patch. This operator dumps the intermediate
+   * graphics format represented by the patch data structure. It may
+   * later be converted into regular formats for a number of graphics
+   * programs.
+   *
+   * @author Wolfgang Bangerth, 2005
+   */
+  template 
+  std::ostream &
+  operator << (std::ostream                           &out,
+               const Patch &patch);
 
 
-/**
- * Input operator for an object of type
- * DataOutBase::Patch. This operator reads the intermediate
- * graphics format represented by the patch data structure, using the
- * format in which it was written using the operator<<.
- *
- * @author Wolfgang Bangerth, 2005
- */
-template 
-std::istream &
-operator >> (std::istream                     &in,
-             DataOutBase::Patch &patch);
 
+  /**
+   * Input operator for an object of type
+   * DataOutBase::Patch. This operator reads the intermediate
+   * graphics format represented by the patch data structure, using the
+   * format in which it was written using the operator<<.
+   *
+   * @author Wolfgang Bangerth, 2005
+   */
+  template 
+  std::istream &
+  operator >> (std::istream                     &in,
+               Patch &patch);
+}
 
 
 DEAL_II_NAMESPACE_CLOSE
diff --git a/deal.II/include/deal.II/base/function.h b/deal.II/include/deal.II/base/function.h
index 616f6de210..19ddcd716d 100644
--- a/deal.II/include/deal.II/base/function.h
+++ b/deal.II/include/deal.II/base/function.h
@@ -193,7 +193,7 @@ public:
    * values already has the right size, i.e.  the same size as the
    * points array.
    *
-   * Be default, this function repeatedly calls value() for each point
+   * By default, this function repeatedly calls value() for each point
    * separately, to fill the output array.
    */
   virtual void value_list (const std::vector > &points,
@@ -207,7 +207,7 @@ public:
    * all elements be vectors with the same number of components as this
    * function has.
    *
-   * Be default, this function repeatedly calls vector_value() for each
+   * By default, this function repeatedly calls vector_value() for each
    * point separately, to fill the output array.
    */
   virtual void vector_value_list (const std::vector > &points,
diff --git a/deal.II/include/deal.II/base/function_parser.h b/deal.II/include/deal.II/base/function_parser.h
index 7f1429eae4..eab0bbea85 100644
--- a/deal.II/include/deal.II/base/function_parser.h
+++ b/deal.II/include/deal.II/base/function_parser.h
@@ -94,7 +94,7 @@ template  class Vector;
   // Define the expressions of the individual components of a
   // vector valued function with two components:
   std::vector expressions(1);
-  expressions[0] = "x cm + y m + PI cm;
+  expressions[0] = "x cm + y m + PI cm";
 
   // Generate an empty function for these two components.
   FunctionParser<2> vector_function;
diff --git a/deal.II/include/deal.II/base/smartpointer.h b/deal.II/include/deal.II/base/smartpointer.h
index f61e2b3681..d2435f1883 100644
--- a/deal.II/include/deal.II/base/smartpointer.h
+++ b/deal.II/include/deal.II/base/smartpointer.h
@@ -472,7 +472,15 @@ SmartPointer::memory_consumption () const
 
 
 
-
+// The following function is not strictly necessary but is an optimization
+// for places where you call swap(p1,p2) with SmartPointer objects p1, p2.
+// Unfortunately, MS Visual Studio (at least up to the 2013 edition) trips
+// over it when calling std::swap(v1,v2) where v1,v2 are std::vectors of
+// SmartPointer objects: it can't determine whether it should call std::swap
+// or dealii::swap on the individual elements (see bug #184 on our Google Code
+// site. Consequently, just take this function out of the competition for this
+// compiler.
+#ifndef _MSC_VER
 /**
  * Global function to swap the contents of two smart pointers. As both
  * objects to which the pointers point retain to be subscribed to, we
@@ -484,7 +492,7 @@ void swap (SmartPointer &t1, SmartPointer &t2)
 {
   t1.swap (t2);
 }
-
+#endif
 
 
 /**
diff --git a/deal.II/include/deal.II/base/thread_local_storage.h b/deal.II/include/deal.II/base/thread_local_storage.h
index dccaa2f61f..70d71b75ed 100644
--- a/deal.II/include/deal.II/base/thread_local_storage.h
+++ b/deal.II/include/deal.II/base/thread_local_storage.h
@@ -1,7 +1,7 @@
 // ---------------------------------------------------------------------
 // $Id$
 //
-// Copyright (C) 2011 - 2013 by the deal.II authors
+// Copyright (C) 2011 - 2014 by the deal.II authors
 //
 // This file is part of the deal.II library.
 //
@@ -84,7 +84,7 @@ namespace Threads
     /**
      * Copy constructor. Initialize each thread local object
      * with the corresponding object of the given object.
-     **/
+     */
     ThreadLocalStorage (const ThreadLocalStorage &t);
 
     /**
@@ -132,17 +132,37 @@ namespace Threads
     ThreadLocalStorage &operator = (const T &t);
 
     /**
-     * Returns a reference to the internal implementation.
+     * Remove the thread-local objects stored for all threads that have
+     * created one with this object (i.e., that have called get()
+     * at least once on this thread. This includes the current thread. If you
+     * call get() subsequently on this or any other thread, new objects will
+     * again be created.
+     *
+     * If deal.II has been configured to not use multithreading, then this function
+     * does not do anything at all. Note that this of course has different semantics
+     * as in the multithreading context the objects are deleted and created again
+     * (possible by copying from a sample object, if the appropriate constructor
+     * of this class was called), whereas in the multithreaded context the object
+     * is simply not touched at all. At the same time, the purpose of this function
+     * is to release memory other threads may have allocated for their own thread
+     * local objects after which every use of this object will require some kind
+     * of initialization. This is necessary both in the multithreaded or
+     * non-multithreaded case.
+     */
+    void clear ();
+
+    /**
+     * Returns a reference to the internal Threading Building Blocks
+     * implementation. This function is really only useful if deal.II
+     * has been configured with multithreading and has no useful
+     * purpose otherwise.
      */
 #ifdef DEAL_II_WITH_THREADS
     tbb::enumerable_thread_specific &
 #else
     T &
 #endif
-    get_implementation()
-    {
-      return data;
-    }
+    get_implementation();
 
   private:
 #ifdef DEAL_II_WITH_THREADS
@@ -225,6 +245,31 @@ namespace Threads
     get() = t;
     return *this;
   }
+
+
+  template 
+  inline
+#ifdef DEAL_II_WITH_THREADS
+  tbb::enumerable_thread_specific &
+#else
+  T &
+#endif
+  ThreadLocalStorage::get_implementation()
+  {
+    return data;
+  }
+
+
+
+  template 
+  inline
+  void
+  ThreadLocalStorage::clear ()
+  {
+#ifdef DEAL_II_WITH_THREADS
+    data.clear ();
+#endif
+  }
 }   // end of implementation of namespace Threads
 
 /**
diff --git a/deal.II/include/deal.II/dofs/dof_accessor.h b/deal.II/include/deal.II/dofs/dof_accessor.h
index 038443436e..1c56c862d5 100644
--- a/deal.II/include/deal.II/dofs/dof_accessor.h
+++ b/deal.II/include/deal.II/dofs/dof_accessor.h
@@ -1208,6 +1208,14 @@ public:
    */
   typedef DH Container;
 
+  /**
+   * A type for an iterator over the faces of a cell. This is
+   * what the face() function returns.
+   */
+  typedef
+  TriaIterator >
+  face_iterator;
+
   /**
    * @name Constructors and initialization
    */
@@ -1284,10 +1292,10 @@ public:
   /**
    * Return an iterator to the @p ith face of this cell.
    *
-   * This function is not implemented in 1D, and maps to
-   * DoFAccessor::line in 2D.
+   * This function is not implemented in 1D, and returns
+   * DoFAccessor::line in 2D and DoFAccessor::quad in 3d.
    */
-  TriaIterator >
+  face_iterator
   face (const unsigned int i) const;
 
   /**
@@ -1748,12 +1756,12 @@ private:
 };
 
 
-template 
+template 
 inline
 bool
-DoFAccessor::is_level_cell()
+DoFAccessor::is_level_cell()
 {
-  return lda;
+  return level_dof_access;
 }
 
 
diff --git a/deal.II/include/deal.II/dofs/dof_accessor.templates.h b/deal.II/include/deal.II/dofs/dof_accessor.templates.h
index 9b689af2ab..ec4b975442 100644
--- a/deal.II/include/deal.II/dofs/dof_accessor.templates.h
+++ b/deal.II/include/deal.II/dofs/dof_accessor.templates.h
@@ -38,18 +38,18 @@ DEAL_II_NAMESPACE_OPEN
 /*------------------------- Functions: DoFAccessor ---------------------------*/
 
 
-template 
+template 
 inline
-DoFAccessor::DoFAccessor ()
+DoFAccessor::DoFAccessor ()
 {
   Assert (false, ExcInvalidObject());
 }
 
 
 
-template 
+template 
 inline
-DoFAccessor::DoFAccessor (
+DoFAccessor::DoFAccessor (
   const Triangulation *tria,
   const int                 level,
   const int                 index,
@@ -64,19 +64,19 @@ DoFAccessor::DoFAccessor (
 
 
 
-template 
+template 
 template 
-DoFAccessor::DoFAccessor (const InvalidAccessor &)
+DoFAccessor::DoFAccessor (const InvalidAccessor &)
 {
   Assert (false, ExcInvalidObject());
 }
 
 
 
-template 
-template 
+template 
+template 
 inline
-DoFAccessor::DoFAccessor (const DoFAccessor &other)
+DoFAccessor::DoFAccessor (const DoFAccessor &other)
   : BaseClass(other),
     dof_handler(0)
 {
@@ -90,10 +90,10 @@ DoFAccessor::DoFAccessor (const DoFAccessor &
 
 
 
-template 
-template 
+template 
+template 
 inline
-DoFAccessor::DoFAccessor (const DoFAccessor &other)
+DoFAccessor::DoFAccessor (const DoFAccessor &other)
   : BaseClass(other),
     dof_handler(const_cast(other.dof_handler))
 {
@@ -101,10 +101,10 @@ DoFAccessor::DoFAccessor (const DoFAccessor
+template 
 inline
 void
-DoFAccessor::set_dof_handler (DH *dh)
+DoFAccessor::set_dof_handler (DH *dh)
 {
   Assert (dh != 0, ExcInvalidObject());
   this->dof_handler = dh;
@@ -112,20 +112,20 @@ DoFAccessor::set_dof_handler (DH *dh)
 
 
 
-template 
+template 
 inline
 const DH &
-DoFAccessor::get_dof_handler () const
+DoFAccessor::get_dof_handler () const
 {
   return *this->dof_handler;
 }
 
 
 
-template 
+template 
 inline
 void
-DoFAccessor::copy_from (
+DoFAccessor::copy_from (
   const TriaAccessorBase &da)
 {
   Assert (this->dof_handler != 0, ExcInvalidObject());
@@ -134,11 +134,11 @@ DoFAccessor::copy_from (
 
 
 
-template 
-template 
+template 
+template 
 inline
 void
-DoFAccessor::copy_from (const DoFAccessor &a)
+DoFAccessor::copy_from (const DoFAccessor &a)
 {
   BaseClass::copy_from (a);
   set_dof_handler (a.dof_handler);
@@ -146,11 +146,11 @@ DoFAccessor::copy_from (const DoFAccessor &
 
 
 
-template 
-template 
+template 
+template 
 inline
 bool
-DoFAccessor::operator == (const DoFAccessor &a) const
+DoFAccessor::operator == (const DoFAccessor &a) const
 {
   Assert (structdim == dim2, ExcCantCompareIterators());
   Assert (this->dof_handler == a.dof_handler, ExcCantCompareIterators());
@@ -159,11 +159,11 @@ DoFAccessor::operator == (const DoFAccessor &a)
 
 
 
-template 
-template 
+template 
+template 
 inline
 bool
-DoFAccessor::operator != (const DoFAccessor &a) const
+DoFAccessor::operator != (const DoFAccessor &a) const
 {
   Assert (structdim == dim2, ExcCantCompareIterators());
   Assert (this->dof_handler == a.dof_handler, ExcCantCompareIterators());
@@ -172,10 +172,10 @@ DoFAccessor::operator != (const DoFAccessor &a)
 
 
 
-template 
+template 
 inline
-TriaIterator >
-DoFAccessor::child (const unsigned int i) const
+TriaIterator >
+DoFAccessor::child (const unsigned int i) const
 {
   Assert (static_cast(this->level()) < this->dof_handler->levels.size(),
           ExcMessage ("DoFHandler not initialized"));
@@ -183,15 +183,15 @@ DoFAccessor::child (const unsigned int i) const
   TriaIterator >
   t = TriaAccessor::child(i);
 
-  TriaIterator > q (*t, this->dof_handler);
+  TriaIterator > q (*t, this->dof_handler);
   return q;
 }
 
 
-template 
+template 
 inline
-TriaIterator >
-DoFAccessor::parent () const
+TriaIterator >
+DoFAccessor::parent () const
 {
   Assert (static_cast(this->level()) < this->dof_handler->levels.size(),
           ExcMessage ("DoFHandler not initialized"));
@@ -206,7 +206,7 @@ DoFAccessor::parent () const
   else
     previous_level = 0;
 
-  TriaIterator > q (this->tria,
+  TriaIterator > q (this->tria,
                                                   previous_level,
                                                   this->parent_index (),
                                                   this->dof_handler);
@@ -1421,9 +1421,9 @@ namespace internal
           }
       }
 
-      template
+      template
       static
-      void set_mg_dof_indices (const dealii::DoFAccessor<1,DH,lda> &,
+      void set_mg_dof_indices (const dealii::DoFAccessor<1,DH,level_dof_access> &,
                                const int,
                                const std::vector &,
                                const unsigned int)
@@ -1433,9 +1433,9 @@ namespace internal
 
 
 
-      template
+      template
       static
-      void set_mg_dof_indices (dealii::DoFAccessor<2, DH,lda> &accessor,
+      void set_mg_dof_indices (dealii::DoFAccessor<2, DH,level_dof_access> &accessor,
                                const int level,
                                const std::vector &dof_indices,
                                const unsigned int fe_index)
@@ -1459,9 +1459,9 @@ namespace internal
 
 
 
-      template
+      template
       static
-      void set_mg_dof_indices (const dealii::DoFAccessor<3, DH,lda> &,
+      void set_mg_dof_indices (const dealii::DoFAccessor<3, DH,level_dof_access> &,
                                const int,
                                const std::vector &,
                                const unsigned int)
@@ -1475,10 +1475,10 @@ namespace internal
 
 
 
-template 
+template 
 inline
 types::global_dof_index
-DoFAccessor::dof_index (const unsigned int i,
+DoFAccessor::dof_index (const unsigned int i,
                                     const unsigned int fe_index) const
 {
   // access the respective DoF
@@ -1491,20 +1491,20 @@ DoFAccessor::dof_index (const unsigned int i,
 }
 
 
-template
+template
 inline
 types::global_dof_index
-DoFAccessor::mg_dof_index (const int level,
+DoFAccessor::mg_dof_index (const int level,
                                               const unsigned int i) const
 {
   return this->dof_handler->template get_dof_index (level, this->present_index, 0, i);
 }
 
 
-template 
+template 
 inline
 void
-DoFAccessor::set_dof_index (const unsigned int i,
+DoFAccessor::set_dof_index (const unsigned int i,
                                         const types::global_dof_index index,
                                         const unsigned int fe_index) const
 {
@@ -1520,10 +1520,10 @@ DoFAccessor::set_dof_index (const unsigned int i,
 
 
 
-template 
+template 
 inline
 unsigned int
-DoFAccessor::n_active_fe_indices () const
+DoFAccessor::n_active_fe_indices () const
 {
   // access the respective DoF
   return
@@ -1536,10 +1536,10 @@ DoFAccessor::n_active_fe_indices () const
 
 
 
-template 
+template 
 inline
 unsigned int
-DoFAccessor::nth_active_fe_index (const unsigned int n) const
+DoFAccessor::nth_active_fe_index (const unsigned int n) const
 {
   // access the respective DoF
   return
@@ -1553,10 +1553,10 @@ DoFAccessor::nth_active_fe_index (const unsigned int n) const
 
 
 
-template 
+template 
 inline
 bool
-DoFAccessor::fe_index_is_active (const unsigned int fe_index) const
+DoFAccessor::fe_index_is_active (const unsigned int fe_index) const
 {
   // access the respective DoF
   return
@@ -1570,10 +1570,10 @@ DoFAccessor::fe_index_is_active (const unsigned int fe_index) const
 
 
 
-template 
+template 
 inline
 types::global_dof_index
-DoFAccessor::vertex_dof_index (const unsigned int vertex,
+DoFAccessor::vertex_dof_index (const unsigned int vertex,
                                                   const unsigned int i,
                                                   const unsigned int fe_index) const
 {
@@ -1586,10 +1586,10 @@ DoFAccessor::vertex_dof_index (const unsigned int vertex,
 }
 
 
-template
+template
 inline
 types::global_dof_index
-DoFAccessor::mg_vertex_dof_index (const int level,
+DoFAccessor::mg_vertex_dof_index (const int level,
                                                      const unsigned int vertex,
                                                      const unsigned int i,
                                                      const unsigned int fe_index) const
@@ -1602,10 +1602,10 @@ DoFAccessor::mg_vertex_dof_index (const int level,
 }
 
 
-template 
+template 
 inline
 void
-DoFAccessor::set_vertex_dof_index (const unsigned int vertex,
+DoFAccessor::set_vertex_dof_index (const unsigned int vertex,
                                                       const unsigned int i,
                                                       const types::global_dof_index index,
                                                       const unsigned int fe_index) const
@@ -1619,10 +1619,10 @@ DoFAccessor::set_vertex_dof_index (const unsigned int vertex,
 }
 
 
-template
+template
 inline
 void
-DoFAccessor::set_mg_vertex_dof_index (const int level,
+DoFAccessor::set_mg_vertex_dof_index (const int level,
                                                          const unsigned int vertex,
                                                          const unsigned int i,
                                                          const types::global_dof_index index,
@@ -1636,10 +1636,10 @@ DoFAccessor::set_mg_vertex_dof_index (const int level,
 }
 
 
-template
+template
 inline
 void
-DoFAccessor::set_mg_dof_index (const int level,
+DoFAccessor::set_mg_dof_index (const int level,
                                                   const unsigned int i,
                                                   const types::global_dof_index index) const
 {
@@ -1674,10 +1674,10 @@ namespace internal
 }
 
 
-template 
+template 
 inline
 const FiniteElement &
-DoFAccessor::get_fe (const unsigned int fe_index) const
+DoFAccessor::get_fe (const unsigned int fe_index) const
 {
   Assert (fe_index_is_active (fe_index) == true,
           ExcMessage ("This function can only be called for active fe indices"));
@@ -1691,8 +1691,8 @@ namespace internal
 {
   namespace DoFAccessor
   {
-    template 
-    void get_dof_indices (const dealii::DoFAccessor<1,DH,lda>   &accessor,
+    template 
+    void get_dof_indices (const dealii::DoFAccessor<1,DH,level_dof_access>   &accessor,
                           std::vector &dof_indices,
                           const unsigned int         fe_index)
     {
@@ -1708,8 +1708,8 @@ namespace internal
 
 
 
-    template 
-    void get_dof_indices (const dealii::DoFAccessor<2,DH,lda>   &accessor,
+    template 
+    void get_dof_indices (const dealii::DoFAccessor<2,DH,level_dof_access>   &accessor,
                           std::vector &dof_indices,
                           const unsigned int         fe_index)
     {
@@ -1743,8 +1743,8 @@ namespace internal
 
 
 
-    template 
-    void get_dof_indices (const dealii::DoFAccessor<3,DH,lda>   &accessor,
+    template 
+    void get_dof_indices (const dealii::DoFAccessor<3,DH,level_dof_access>   &accessor,
                           std::vector &dof_indices,
                           const unsigned int         fe_index)
     {
@@ -1799,8 +1799,8 @@ namespace internal
 
 
 
-    template
-    void get_mg_dof_indices (const dealii::DoFAccessor<1, DH,lda> &accessor,
+    template
+    void get_mg_dof_indices (const dealii::DoFAccessor<1, DH,level_dof_access> &accessor,
                              const int level,
                              std::vector &dof_indices,
                              const unsigned int fe_index)
@@ -1825,8 +1825,8 @@ namespace internal
 
 
 
-    template
-    void get_mg_dof_indices (const dealii::DoFAccessor<2, DH,lda> &accessor,
+    template
+    void get_mg_dof_indices (const dealii::DoFAccessor<2, DH,level_dof_access> &accessor,
                              const int level,
                              std::vector &dof_indices,
                              const unsigned int fe_index)
@@ -1854,8 +1854,8 @@ namespace internal
 
 
 
-    template
-    void get_mg_dof_indices (const dealii::DoFAccessor<3, DH,lda> &accessor,
+    template
+    void get_mg_dof_indices (const dealii::DoFAccessor<3, DH,level_dof_access> &accessor,
                              const int level,
                              std::vector &dof_indices,
                              const unsigned int fe_index)
@@ -1890,10 +1890,10 @@ namespace internal
 }
 
 
-template 
+template 
 inline
 void
-DoFAccessor::get_dof_indices (std::vector &dof_indices,
+DoFAccessor::get_dof_indices (std::vector &dof_indices,
                                                 const unsigned int         fe_index) const
 {
   Assert (this->dof_handler != 0, ExcNotInitialized());
@@ -1953,9 +1953,9 @@ DoFAccessor::get_dof_indices (std::vector
+template
 inline
-void DoFAccessor::get_mg_dof_indices (const int level,
+void DoFAccessor::get_mg_dof_indices (const int level,
                                                          std::vector &dof_indices,
                                                          const unsigned int fe_index) const
 {
@@ -2005,9 +2005,9 @@ void DoFAccessor::get_mg_dof_indices (const int level,
 }
 
 
-template
+template
 inline
-void DoFAccessor::set_mg_dof_indices (const int level,
+void DoFAccessor::set_mg_dof_indices (const int level,
                                                          const std::vector &dof_indices,
                                                          const unsigned int fe_index)
 {
@@ -2061,9 +2061,9 @@ namespace internal
 {
   namespace DoFAccessor
   {
-    template 
+    template 
     inline
-    typename dealii::internal::DoFHandler::Iterators::quad_iterator
+    typename dealii::internal::DoFHandler::Iterators::quad_iterator
     get_quad(const dealii::Triangulation *tria,
              unsigned int index,
              DH *dof_handler)
@@ -2071,57 +2071,57 @@ namespace internal
     }
 
 
-    template
+    template
     inline
-    typename dealii::internal::DoFHandler::Iterators, lda>::quad_iterator
+    typename dealii::internal::DoFHandler::Iterators, level_dof_access>::quad_iterator
     get_quad(const dealii::Triangulation<2,2> *,
              unsigned int,
              dealii::DoFHandler<2,2> *)
     {
       Assert(false, ExcNotImplemented());
-      return typename dealii::internal::DoFHandler::Iterators, lda>::line_iterator();
+      return typename dealii::internal::DoFHandler::Iterators, level_dof_access>::line_iterator();
     }
 
-    template
+    template
     inline
-    typename dealii::internal::DoFHandler::Iterators, lda>::quad_iterator
+    typename dealii::internal::DoFHandler::Iterators, level_dof_access>::quad_iterator
     get_quad(const dealii::Triangulation<2,3> *,
              unsigned int,
              dealii::DoFHandler<2,3> *)
     {
       Assert(false, ExcNotImplemented());
-      return typename dealii::internal::DoFHandler::Iterators, lda>::line_iterator();
+      return typename dealii::internal::DoFHandler::Iterators, level_dof_access>::line_iterator();
     }
 
-    template
+    template
     inline
-    typename dealii::internal::DoFHandler::Iterators, lda>::quad_iterator
+    typename dealii::internal::DoFHandler::Iterators, level_dof_access>::quad_iterator
     get_quad(const dealii::Triangulation<2,2> *,
              unsigned int,
              dealii::hp::DoFHandler<2,2> *)
     {
       Assert(false, ExcNotImplemented());
-      return typename dealii::internal::DoFHandler::Iterators, lda>::line_iterator();
+      return typename dealii::internal::DoFHandler::Iterators, level_dof_access>::line_iterator();
     }
 
-    template
+    template
     inline
-    typename dealii::internal::DoFHandler::Iterators, lda>::quad_iterator
+    typename dealii::internal::DoFHandler::Iterators, level_dof_access>::quad_iterator
     get_quad(const dealii::Triangulation<2,3> *,
              unsigned int,
              dealii::hp::DoFHandler<2,3> *)
     {
       Assert(false, ExcNotImplemented());
-      return typename dealii::internal::DoFHandler::Iterators, lda>::line_iterator();
+      return typename dealii::internal::DoFHandler::Iterators, level_dof_access>::line_iterator();
     }
   }
 }
 
 
-template 
+template 
 inline
-typename dealii::internal::DoFHandler::Iterators::line_iterator
-DoFAccessor::line (const unsigned int i) const
+typename dealii::internal::DoFHandler::Iterators::line_iterator
+DoFAccessor::line (const unsigned int i) const
 {
   // if we are asking for a particular line and this object refers to
   // a line, then the only valid index is i==0 and we should return
@@ -2131,7 +2131,7 @@ DoFAccessor::line (const unsigned int i) const
       Assert (i==0, ExcMessage ("You can only ask for line zero if the "
                                 "current object is a line itself."));
       return
-        typename dealii::internal::DoFHandler::Iterators::cell_iterator
+        typename dealii::internal::DoFHandler::Iterators::cell_iterator
         (&this->get_triangulation(),
          this->level(),
          this->index(),
@@ -2143,7 +2143,7 @@ DoFAccessor::line (const unsigned int i) const
   Assert (DH::dimension > 1, ExcImpossibleInDim(DH::dimension));
 
   // checking of 'i' happens in line_index(i)
-  return typename dealii::internal::DoFHandler::Iterators::line_iterator
+  return typename dealii::internal::DoFHandler::Iterators::line_iterator
          (this->tria,
           0,  // only sub-objects are allowed, which have no level
           this->line_index(i),
@@ -2151,10 +2151,10 @@ DoFAccessor::line (const unsigned int i) const
 }
 
 
-template 
+template 
 inline
-typename dealii::internal::DoFHandler::Iterators::quad_iterator
-DoFAccessor::quad (const unsigned int i) const
+typename dealii::internal::DoFHandler::Iterators::quad_iterator
+DoFAccessor::quad (const unsigned int i) const
 {
   // if we are asking for a
   // particular quad and this object
@@ -2178,7 +2178,7 @@ DoFAccessor::quad (const unsigned int i) const
   Assert (DH::dimension > 2, ExcImpossibleInDim(DH::dimension));
 
   // checking of 'i' happens in quad_index(i)
-  return typename dealii::internal::DoFHandler::Iterators::quad_iterator
+  return typename dealii::internal::DoFHandler::Iterators::quad_iterator
          (this->tria,
           0,  // only sub-objects are allowed, which have no level
           this->quad_index(i),
@@ -2189,18 +2189,18 @@ DoFAccessor::quad (const unsigned int i) const
 /*------------------------- Functions: DoFAccessor<0,1,spacedim> ---------------------------*/
 
 
-template