From 86cfa804de5060dd3bf247b45f6d8cd9ccc93f69 Mon Sep 17 00:00:00 2001 From: Melanie Gerault Date: Thu, 8 Aug 2019 15:48:19 -0600 Subject: [PATCH] Add GridGenerator::eccentric_hyper_shell Add an eccentric hyper shell geometry that is formed by two spheres with different center points. --- doc/news/changes/minor/20190808MelanieGerault | 3 + include/deal.II/grid/grid_generator.h | 34 + source/grid/grid_generator.cc | 55 +- source/grid/grid_generator.inst.in | 8 + .../grid_generator_eccentric_hyper_shell.cc | 69 + ...rid_generator_eccentric_hyper_shell.output | 2589 +++++++++++++++++ 6 files changed, 2756 insertions(+), 2 deletions(-) create mode 100644 doc/news/changes/minor/20190808MelanieGerault create mode 100644 tests/grid/grid_generator_eccentric_hyper_shell.cc create mode 100644 tests/grid/grid_generator_eccentric_hyper_shell.output diff --git a/doc/news/changes/minor/20190808MelanieGerault b/doc/news/changes/minor/20190808MelanieGerault new file mode 100644 index 0000000000..d4db19c146 --- /dev/null +++ b/doc/news/changes/minor/20190808MelanieGerault @@ -0,0 +1,3 @@ +Added: GridGenerator::eccentric_hyper_shell() a volume contained between two circles or spheres centered around two different points. +
+(Melanie Gerault, 2019/08/08) diff --git a/include/deal.II/grid/grid_generator.h b/include/deal.II/grid/grid_generator.h index fe2dc76497..6612b08df4 100644 --- a/include/deal.II/grid/grid_generator.h +++ b/include/deal.II/grid/grid_generator.h @@ -957,6 +957,40 @@ namespace GridGenerator const unsigned int n_cells = 0, bool colorize = false); + /** + * Produce an eccentric hyper-shell, the region between two spheres centered + * on two distinct center points. One has to specify the inner_center + * and outer_center, with given inner_radius and + * outer_radius. The number n_cells indicates the number of + * cells of the resulting triangulation, i.e., how many cells form the ring + * (in 2d) or the shell (in 3d). + * + * By default, the outer boundary has the indicator 1 while the inner boundary + * has id 0. In 3d, this applies to both the faces and the edges of these + * boundaries. + * + * A SphericalManifold is attached to the outer boundary with an id of 1 while + * another SphericalManifold is attached to the inner boundary with an id of + * 0. A TransfiniteInterpolationManifold is attached to all other cells and + * faces of the triangulation with an id of 2. + * + * Here, the number n_cells of elements has the same meaning as in + * GridGenerator::hyper_shell. + * + * @note This function is declared to exist for triangulations of all space + * dimensions, but throws an error if called in 1d. + * + * @note The triangulation passed as argument needs to be empty when calling this function. + */ + template + void + eccentric_hyper_shell(Triangulation &triangulation, + const Point & inner_center, + const Point & outer_center, + const double inner_radius, + const double outer_radius, + const unsigned int n_cells); + /** * Produce a half hyper-shell, i.e. the space between two circles in two * space dimensions and the region between two spheres in 3d, with given diff --git a/source/grid/grid_generator.cc b/source/grid/grid_generator.cc index 283b553aa0..83ef28df08 100644 --- a/source/grid/grid_generator.cc +++ b/source/grid/grid_generator.cc @@ -146,7 +146,7 @@ namespace GridGenerator // data, we do this only based on // topology. - // For the mesh based on cube, + // For the mesh based on cube, // this is highly irregular for (Triangulation<2>::cell_iterator cell = tria.begin(); cell != tria.end(); @@ -2662,7 +2662,6 @@ namespace GridGenerator Assert(false, ExcNotImplemented()); } - template <> void cylinder_shell(Triangulation<1> &, const double, @@ -3005,6 +3004,58 @@ namespace GridGenerator } + + template + void + eccentric_hyper_shell(Triangulation &tria, + const Point & inner_center, + const Point & outer_center, + const double inner_radius, + const double outer_radius, + const unsigned int n_cells) + { + GridGenerator::hyper_shell( + tria, outer_center, inner_radius, outer_radius, n_cells, true); + + // check the consistency of the dimensions provided + Assert( + outer_radius - inner_radius > outer_center.distance(inner_center), + ExcInternalError( + "The inner radius is greater than or equal to the outer radius plus eccentricity.")); + + // shift nodes along the inner boundary according to the position of + // inner_circle + std::set *> vertices_to_move; + + for (const auto &face : tria.active_face_iterators()) + if (face->boundary_id() == 0) + for (unsigned int v = 0; v < GeometryInfo::vertices_per_face; ++v) + vertices_to_move.insert(&face->vertex(v)); + + const auto shift = inner_center - outer_center; + for (const auto &p : vertices_to_move) + (*p) += shift; + + // the original hyper_shell function assigns the same manifold id + // to all cells and faces. Set all manifolds ids to a different + // value (2), then use boundary ids to assign different manifolds to + // the inner (0) and outer manifolds (1). Use a transfinite manifold + // for all faces and cells aside from the boundaries. + tria.set_all_manifold_ids(2); + GridTools::copy_boundary_to_manifold_id(tria); + + SphericalManifold inner_manifold(inner_center); + SphericalManifold outer_manifold(outer_center); + + TransfiniteInterpolationManifold transfinite; + transfinite.initialize(tria); + + tria.set_manifold(0, inner_manifold); + tria.set_manifold(1, outer_manifold); + tria.set_manifold(2, transfinite); + } + + // Implementation for 2D only template <> void cylinder(Triangulation<2> &tria, diff --git a/source/grid/grid_generator.inst.in b/source/grid/grid_generator.inst.in index f07d7ab060..6488b904e1 100644 --- a/source/grid/grid_generator.inst.in +++ b/source/grid/grid_generator.inst.in @@ -201,6 +201,14 @@ for (deal_II_dimension : DIMENSIONS) const unsigned int, const bool); + template void + eccentric_hyper_shell(Triangulation &, + const Point &, + const Point &, + const double, + const double, + const unsigned int); + \} } diff --git a/tests/grid/grid_generator_eccentric_hyper_shell.cc b/tests/grid/grid_generator_eccentric_hyper_shell.cc new file mode 100644 index 0000000000..8c82facf92 --- /dev/null +++ b/tests/grid/grid_generator_eccentric_hyper_shell.cc @@ -0,0 +1,69 @@ +// --------------------------------------------------------------------- +// +// Copyright (C) 2005 - 2019 by the deal.II authors +// +// This file is part of the deal.II library. +// +// The deal.II library is free software; you can use it, redistribute +// it, and/or modify it under the terms of the GNU Lesser General +// Public License as published by the Free Software Foundation; either +// version 2.1 of the License, or (at your option) any later version. +// The full text of the license can be found in the file LICENSE.md at +// the top level directory of deal.II. +// +// --------------------------------------------------------------------- + + + +// Test GridGenerator::eccentric_hyper_shell + +#include + +#include +#include +#include +#include +#include +#include +#include + +#include "../tests.h" + + + +template +void +test(std::ostream &out) +{ + Triangulation triangulation; + + const Point outer_center; + Point inner_center; + inner_center[0] = 0.2; + const double inner_radius = 0.5; + const double outer_radius = 1.0; + + GridGenerator::eccentric_hyper_shell(triangulation, + inner_center, + outer_center, + inner_radius, + outer_radius, + dim == 2 ? 10 : 12); + + triangulation.refine_global(1); + + GridOut go; + deallog.get_file_stream() << "Output mesh for dim = " << dim << std::endl + << std::endl; + go.write_gnuplot(triangulation, out); +} + + +int +main() +{ + initlog(); + + test<2>(deallog.get_file_stream()); + test<3>(deallog.get_file_stream()); +} diff --git a/tests/grid/grid_generator_eccentric_hyper_shell.output b/tests/grid/grid_generator_eccentric_hyper_shell.output new file mode 100644 index 0000000000..6da8447666 --- /dev/null +++ b/tests/grid/grid_generator_eccentric_hyper_shell.output @@ 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