From c23ad3d6b0f221d5cd560e5ba5fdffc4f9b8cccd Mon Sep 17 00:00:00 2001
From: maier environment, unify and cleanup
documentation
git-svn-id: https://svn.dealii.org/trunk@31825 0785d39b-7218-0410-832d-ea1e28bc413d
---
deal.II/doc/developers/cmake-internals.html | 789 +++++++++---------
deal.II/doc/developers/svn.html | 19 +-
deal.II/doc/developers/toc.html | 183 ++--
.../doc/developers/writing-documentation.html | 110 +--
deal.II/doc/documentation.html | 75 +-
deal.II/doc/navbar.html | 2 +-
deal.II/doc/screen.css | 156 ++--
deal.II/doc/users/cmake.html | 579 ++++++-------
deal.II/doc/users/cmakelists.html | 52 +-
deal.II/doc/users/doxygen.html | 4 +-
deal.II/doc/users/navbar.html | 2 +-
deal.II/doc/users/toc.html | 234 +++---
12 files changed, 1072 insertions(+), 1133 deletions(-)
diff --git a/deal.II/doc/developers/cmake-internals.html b/deal.II/doc/developers/cmake-internals.html
index 9d985da5e6..b2308511d2 100644
--- a/deal.II/doc/developers/cmake-internals.html
+++ b/deal.II/doc/developers/cmake-internals.html
@@ -160,52 +160,51 @@ SET_TARGET_PROPERTIES(${DEAL_II_BASE_NAME}${DEAL_II_${build}_SUFFIX}
flags or compiler support, please respect the following note
-
- #
- # (./cmake/setup_compiler_flags.cmake)
- #
- # ####################
- # # FAT NOTE: #
- # ####################
- #
- # All configuration in setup_compiler_flags.cmake and
- # setup_compiler_flags_
- - ./cmake/checks/check_01_compiler_features.cmake - - Search for support for compiler dependent features such as stack - trace support, demangler support, etc. - - ./cmake/checks/check_01_cpu_features.cmake - - Platform introspection for CPU features goes here and must be - guarded with DEAL_II_ALLOW_PLATFORM_INTROSPECTION +./cmake/checks/check_01_compiler_features.cmake + - Search for support for compiler dependent features such as stack + trace support, demangler support, etc. - ./cmake/checks/check_01_cxx_features.cmake - - Check for supported C++ language features such as sufficient C++11 - support +./cmake/checks/check_01_cpu_features.cmake + - Platform introspection for CPU features goes here and must be + guarded with DEAL_II_ALLOW_PLATFORM_INTROSPECTION - ./cmake/checks/check_01_system_features.cmake - - Checks for specific platform (Linux/Darwin/CYGWIN/Windows..) - features and support +./cmake/checks/check_01_cxx_features.cmake + - Check for supported C++ language features such as sufficient C++11 + support - ./cmake/checks/check_02_compiler_bugs.cmake - - Check for compiler bugs +./cmake/checks/check_01_system_features.cmake + - Checks for specific platform (Linux/Darwin/CYGWIN/Windows..) + features and support +./cmake/checks/check_02_compiler_bugs.cmake + - Check for compiler bugs
- - CHECK_CXX_SOURCE_COMPILES(source variable) - - Checks whether it is possible to compile _and_ link the code snippet - <source>. If successful, variable is set to 1. - - CHECK_CXX_SOURCE_RUNS(source variable) - - variable is set to 1 if <source> could be successfully compiled and - linked and the resulting program ran and exited without error. - Avoid this macro outside of a DEAL_II_ALLOW_PLATFORM_INTROSPECTION - guard. A sensible fallback should be provided if the check cannot - be run (e.g. when cross compiling). - - CHECK_CXX_COMPILER_BUG(source variable) - - Inverts the logic of CHECK_CXX_SOURCE_COMPILES(), i.e. variable is - set to 1 if it was not possible to compile and link <source>. - - CHECK_INCLUDE_FILE_CXX(header variable) - - Check whether it is possible to compile and link a dummy program - including <header>. - - CHECK_FUNCTION_EXISTS(function variable) - - Check for the existence of a function prototype with name - <function>. (Don't forget to specify the link libraries, see - below.) Use CHECK_CXX_SYMBOL_EXISTS to search for C++ function - definitions instead, if possible. - - CHECK_CXX_SYMBOL_EXISTS(symbol header_file variable) - - Check for the existence of a symbol definition in the header_file - as well as for the presence in the current link interface - (Don't forget to specify the link libraries, see below.) - - CHECK_CXX_COMPILER_FLAG(flag variable) - - Sets the variable to 1 if the compiler understands the flag. - +CHECK_CXX_SOURCE_COMPILES(source variable) + - Checks whether it is possible to compile _and_ link the code snippet + <source>. If successful, variable is set to 1. + +CHECK_CXX_SOURCE_RUNS(source variable) + - variable is set to 1 if <source> could be successfully compiled and + linked and the resulting program ran and exited without error. + Avoid this macro outside of a DEAL_II_ALLOW_PLATFORM_INTROSPECTION + guard. A sensible fallback should be provided if the check cannot + be run (e.g. when cross compiling). + +CHECK_CXX_COMPILER_BUG(source variable) + - Inverts the logic of CHECK_CXX_SOURCE_COMPILES(), i.e. variable is + set to 1 if it was not possible to compile and link <source>. + +CHECK_INCLUDE_FILE_CXX(header variable) + - Check whether it is possible to compile and link a dummy program + including <header>. + +CHECK_FUNCTION_EXISTS(function variable) + - Check for the existence of a function prototype with name + <function>. (Don't forget to specify the link libraries, see + below.) Use CHECK_CXX_SYMBOL_EXISTS to search for C++ function + definitions instead, if possible. + +CHECK_CXX_SYMBOL_EXISTS(symbol header_file variable) + - Check for the existence of a symbol definition in the header_file + as well as for the presence in the current link interface + (Don't forget to specify the link libraries, see below.) + +CHECK_CXX_COMPILER_FLAG(flag variable) + - Sets the variable to 1 if the compiler understands the flag.
CMAKE_REQUIRED_FLAGS
. There are two small macros
that do this job nicely:
-- - PUSH_TEST_FLAG("-Werror") - CHECK_CXX_SOURCE_COMPILES(...) - POP_TEST_FLAG() ++PUSH_TEST_FLAG("-Werror") +CHECK_CXX_SOURCE_COMPILES(...) +POP_TEST_FLAG()
CMAKE_REQUIRED_*
(including
CMAKE_REQUIRED_FLAGS
) to their default values:
-- - LIST(APPEND CMAKE_REQUIRED_INCLUDES <a list of includes>) - LIST(APPEND CMAKE_REQUIRED_LIBRARIES <a list of libraries>) - CHECK_CXX_SOURCE_COMPILES(...) - RESET_CMAKE_REQUIRED() ++LIST(APPEND CMAKE_REQUIRED_INCLUDES <a list of includes>) +LIST(APPEND CMAKE_REQUIRED_LIBRARIES <a list of libraries>) +CHECK_CXX_SOURCE_COMPILES(...) +RESET_CMAKE_REQUIRED()@@ -353,16 +346,15 @@ SET_TARGET_PROPERTIES(${DEAL_II_BASE_NAME}${DEAL_II_${build}_SUFFIX} If successful, the following uncached variables might be set:- - FEATURE_FOUND - FEATURE_LIBRARIES - FEATURE_INCLUDE_DIRS - FEATURE_LINKER_FLAGS - - FEATURE_VERSION - FEATURE_VERSION_MAJOR - FEATURE_VERSION_MINOR - FEATURE_VERSION_SUBMINOR +FEATURE_FOUND +FEATURE_LIBRARIES +FEATURE_INCLUDE_DIRS +FEATURE_LINKER_FLAGS + +FEATURE_VERSION +FEATURE_VERSION_MAJOR +FEATURE_VERSION_MINOR +FEATURE_VERSION_SUBMINORThere are obviously valid exceptions from this rule, though. @@ -375,321 +367,312 @@ There are obviously valid exceptions from this rule, though. A hint withFEATURE_DIR
can be set up for convenience. It is best to start theFind
module by -- - SET_IF_EMPTY(FEATURE_DIR "$ENV{FEATURE_DIR}") ++SET_IF_EMPTY(FEATURE_DIR "$ENV{FEATURE_DIR}")and useFEATURE_DIR
as a hint. If the external library could be found, hide it viaMARK_AS_ADVANCED
, if the external library could not be found, set a cache value: -- - SET(FEATURE_DIR "" CACHE PATH "An optional hint to a FEATURE directory") ++SET(FEATURE_DIR "" CACHE PATH "An optional hint to a FEATURE directory")- -- + +
./cmake/configure/configure_*.cmake
+
./cmake/configure/configure_*.cmake
The final step in the configuration phase is the setup of features (which refer to external or bundled libraries deal.II can optionally interface with.) -
-- At bare minimum
configure_<feature>.cmake
- file for a feature just consists of a call to the -CONFIGURE_FEATURE(<FEATURE>)
macro which is - implemented in -./cmake/macros/macro_configure_feature.cmake
. - In this case the correspondingFind<FEATURE>.cmake
- module is used to determine whether an external dependency can be - resolved or not. Depending on the current state of -DEAL_II_WITH_<FEATURE>
(see - here) the variables -- - FEATURE_LIBRARIES - FEATURE_INCLUDE_DIRS - FEATURE_LINKER_FLAGS -- are appended to the set of global variables - andDEAL_II_WITH_<FEATURE>
is set to -TRUE
. - - -- It is possible to override this default behaviour with the following - variables and macros (all of them are optional and will be replaced - by an appropriate default action if unset): +
+ At bare minimum
configure_<feature>.cmake
+ file for a feature just consists of a call to the +CONFIGURE_FEATURE(<FEATURE>)
macro which is + implemented in +./cmake/macros/macro_configure_feature.cmake
. + In this case the correspondingFind<FEATURE>.cmake
+ module is used to determine whether an external dependency can be + resolved or not. Depending on the current state of +DEAL_II_WITH_<FEATURE>
(see + here) the variables ++FEATURE_LIBRARIES +FEATURE_INCLUDE_DIRS +FEATURE_LINKER_FLAGS ++ are appended to the set of global variables + andDEAL_II_WITH_<FEATURE>
is set to +TRUE
. + + ++ It is possible to override this default behaviour with the following + variables and macros (all of them are optional and will be replaced + by an appropriate default action if unset): +
<FEATURE>
means all caps,
+ <feature>
means all lowercase
+
+ ./cmake/configure/configure_<feature>.cmake
:
++FEATURE_<FEATURE>_DEPENDS (a variable) + - a variable which contains an optional list of other features + this feature depends on (and which have to be enabled for this feature + to work.) The features must be given with the full option toggle: + DEAL_II_WITH_[...] + +FEATURE_<FEATURE>_FIND_EXTERNAL(var) (a macro) + - which should set var to TRUE if all dependencies for the feature are + fulfilled. In this case all necessary variables for + FEATURE_<FEATURE>_CONFIGURE_EXTERNAL must be set. + Otherwise var should remain unset. + If this macro is undefined, FIND_PACKAGE(<FEATURES>) is + called directly instead. + +FEATURE_<FEATURE>_CONFIGURE_EXTERNAL() (a macro) + - which should setup all necessary configuration for the feature with + external dependencies. If something goes wrong this macro must + issue a FATAL_ERROR. + If this macro is undefined, the information provided in + <FEATURES>_LIBRARIES, <FEATURES>_INCLUDE_DIRS and + <FEATURES>_LINKER_FLAGS is used for the build. + +FEATURE_<FEATURE>_CONFIGURE_BUNDLED() (a macro) + - which should setup all necessary configuration for the feature with + bundled source dependencies. If something goes wrong this macro must + issue a FATAL_ERROR. + +FEATURE_<FEATURE>_ERROR_MESSAGE() (macro) + - which should print a meaningful error message (with FATAL_ERROR) for + the case that no external library was found (and bundled is not + allowed to be used.) If not defined, a suitable default error message + will be printed. ++ +
./bundled/CMakeLists.txt
:
++FEATURE_<FEATURE>_HAVE_BUNDLED (a boolean) + - which should either be set to TRUE if all necessary libraries of the + features comes bundled with deal.II and hence can be supported + without external dependencies, or unset. + +DEAL_II_FORCE_BUNDLED_<FEATURE> (an option) + - If <feature> can be set up by bundled libraries, this + configuration option must be present to force a use of bundled + dependencies ++ +
FEATURE_<FEATURE>_BUNDLED_CONFIGURED
is set to
+ TRUE
the file ./bundled/CMakeLists.txt
+ must compile and install the bundled package appropriately.
+
+ The following list describes all global variables controlling the
+ build process and the visibility associated with it (internal use for
+ compiling deal.Ii, externally used variables will get exported in
+ deal.IIConfig.cmake). Lists should be manipulated with
+ LIST(APPEND ...)
, flags with ADD_FLAGS(...)
+ (or if it is necessary to guard them with
+ ENABLE_IF_SUPPORTED(...)
.)
+
<FEATURE>
means all caps,
- <feature>
means all lowercase
-
- ./cmake/configure/configure_<feature>.cmake
:
- - - FEATURE_<FEATURE>_DEPENDS (a variable) - - a variable which contains an optional list of other features - this feature depends on (and which have to be enabled for this feature - to work.) The features must be given with the full option toggle: - DEAL_II_WITH_[...] - - FEATURE_<FEATURE>_FIND_EXTERNAL(var) (a macro) - - which should set var to TRUE if all dependencies for the feature are - fulfilled. In this case all necessary variables for - FEATURE_<FEATURE>_CONFIGURE_EXTERNAL must be set. - Otherwise var should remain unset. - If this macro is undefined, FIND_PACKAGE(<FEATURES>) is - called directly instead. - - FEATURE_<FEATURE>_CONFIGURE_EXTERNAL() (a macro) - - which should setup all necessary configuration for the feature with - external dependencies. If something goes wrong this macro must - issue a FATAL_ERROR. - If this macro is undefined, the information provided in - <FEATURES>_LIBRARIES, <FEATURES>_INCLUDE_DIRS and - <FEATURES>_LINKER_FLAGS is used for the build. - - FEATURE_<FEATURE>_CONFIGURE_BUNDLED() (a macro) - - which should setup all necessary configuration for the feature with - bundled source dependencies. If something goes wrong this macro must - issue a FATAL_ERROR. - - FEATURE_<FEATURE>_ERROR_MESSAGE() (macro) - - which should print a meaningful error message (with FATAL_ERROR) for - the case that no external library was found (and bundled is not - allowed to be used.) If not defined, a suitable default error message - will be printed. -- -
./bundled/CMakeLists.txt
:
- - - FEATURE_<FEATURE>_HAVE_BUNDLED (a boolean) - - which should either be set to TRUE if all necessary libraries of the - features comes bundled with deal.II and hence can be supported - without external dependencies, or unset. - - DEAL_II_FORCE_BUNDLED_<FEATURE> (an option) - - If <feature> can be set up by bundled libraries, this - configuration option must be present to force a use of bundled - dependencies -- -
FEATURE_<FEATURE>_BUNDLED_CONFIGURED
is set to
- TRUE
the file ./bundled/CMakeLists.txt
- must compile and install the bundled package appropriately.
+ _DEBUG
or
+ _RELEASE
: Used for all targets
+ <...>_DEBUG
: additionally used for debug targets
+ <...>_RELEASE
: additionally used for release targets
DEAL_II_LINKER_FLAGS
+ DEAL_II_LINKER_FLAGS_DEBUG
+ DEAL_II_LINKER_FLAGS_RELEASE
+ -std=c++11
(if available):
+ CMAKE_CXX_FLAGS
+ DEAL_II_CXX_FLAGS_DEBUG
+ DEAL_II_CXX_FLAGS_RELEASE
+ INCLUDE_DIRECTORIES(...)
+ -D<...>
) for the compilation of the
+ deal.II library:
+ DEAL_II_DEFINITIONS
+ DEAL_II_DEFINITIONS_DEBUG
+ DEAL_II_DEFINITIONS_RELEASE
+
- The following list describes all global variables controlling the
- build process and the visibility associated with it (internal use for
- compiling deal.Ii, externally used variables will get exported in
- deal.IIConfig.cmake). Lists should be manipulated with
- LIST(APPEND ...)
, flags with ADD_FLAGS(...)
- (or if it is necessary to guard them with
- ENABLE_IF_SUPPORTED(...)
.)
+
_DEBUG
or
- _RELEASE
: Used for all targets
- <...>_DEBUG
: additionally used for debug targets
- <...>_RELEASE
: additionally used for release targets
- DEAL_II_LINKER_FLAGS
- DEAL_II_LINKER_FLAGS_DEBUG
- DEAL_II_LINKER_FLAGS_RELEASE
- -std=c++11
(if available):
- CMAKE_CXX_FLAGS
- DEAL_II_CXX_FLAGS_DEBUG
- DEAL_II_CXX_FLAGS_RELEASE
- INCLUDE_DIRECTORIES(...)
- -D<...>
) for the compilation of the
- deal.II library:
- DEAL_II_DEFINITIONS
- DEAL_II_DEFINITIONS_DEBUG
- DEAL_II_DEFINITIONS_RELEASE
- DEAL_II_EXTERNAL_LIBRARIES
- DEAL_II_EXTERNAL_LIBRARIES_DEBUG
- DEAL_II_EXTERNAL_LIBRARIES_RELEASE
- DEAL_II_USER_DEFINITIONS
- DEAL_II_USER_DEFINITIONS_DEBUG
- DEAL_II_USER_DEFINITIONS_RELEASE
- DEAL_II_USER_INCLUDE_DIRS
- DEAL_II_EXTERNAL_LIBRARIES
+ DEAL_II_EXTERNAL_LIBRARIES_DEBUG
+ DEAL_II_EXTERNAL_LIBRARIES_RELEASE
./include/deal.II/base/config.h.in
DEAL_II_USER_DEFINITIONS
+ DEAL_II_USER_DEFINITIONS_DEBUG
+ DEAL_II_USER_DEFINITIONS_RELEASE
+ config.h.in
should only contain a minimum of
- necessary compile definitions to avoid unnecessary recompilation if
- configuration changes.
- config.h.in
should have a
- prominent comment explaining it and should be grouped by file
- exporting the definition.
+ DEAL_II_USER_INCLUDE_DIRS
./include/deal.II/base/config.h.in
config.h.in
should only contain a minimum of
+ necessary compile definitions to avoid unnecessary recompilation if
+ configuration changes.
+ config.h.in
should have a
+ prominent comment explaining it and should be grouped by file
+ exporting the definition.
+ ./source/CMakeLists.txt
+ All parts of the library are organized into logical object libraries
+ with their respective sources lying under
+ ./source/<foo>
, or
+ ./bundled/<foo>/<...>
. The actual setup of
+ an object library happens within that subdirectories with the help of
+ two macros:
+
+# +# Glob for all header files associated with the object target: +# As this list is only for cosmetic reasons, so that associated header +# files show up in IDEs, we don't manage an explicit list (with the +# trade-off to have to run "make rebuild_cache" when a new header file +# emerges...) +# +FILE(GLOB _header + ${CMAKE_SOURCE_DIR}/include/deal.II/dofs/*.h + ) + +# +# A list of source files forming the object target: +# +SET(_src + ... + dof_tools.cc + ) + +# +# A list of instantiations that must be expanded: +# +SET(_inst + ... + dof_tools.inst.in + ) + +# +# The following macro will set up an obj_dofs.debug and +# obj_dofs.release target with appropriate compile flags and +# definitions for a simultaneous build of debug and release library. +# Furthermore, the object name will be stored in +# ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/deal_ii_objects_(debug/release) +# so that it is available in global scope. +# +# Header files and instatiation files (${_header}, ${_inst}) are added +# for cosmetic reasons, so that they show up in IDEs. +# +DEAL_II_ADD_LIBRARY(obj_dofs OBJECT ${_src} ${_header} ${_inst}) + +# +# This macro will set up an obj_dofs.inst target for expanding all +# files listed in ${inst_in_files}. Appropriate target dependencies +# will be added to obj_dofs.debug and obj_dofs.release. +# +EXPAND_INSTANTIATIONS(obj_dofs "${inst_in_files}") ++ + +
+ Later, all object targets are collected in
+ ./source/CMakeLists.txt
to define the actual debug and
+ releases libraries. For further details, see
+ ./source/CMakelists.txt
and
+ ./cmake/macros/macro_deal_ii_add_library.cmake
.
+
./cmake/config/CMakeLists.txt
+ The final bits of configuration happens in
+ ./cmake/config/CMakeLists.txt
where the templates for
+ the project configuration deal.IIConfig.cmake
and the
+ compatibility file Make.global_options
get expanded.
+ Furthermore, the configuration for the template expansion mechanism
+ resides under ./cmake/config/template_arguments.in
.
+
./source/CMakeLists.txt
- All parts of the library are organized into logical object libraries
- with their respective sources lying under
- ./source/<foo>
, or
- ./bundled/<foo>/<...>
. The actual setup of
- an object library happens within that subdirectories with the help of
- two macros:
-
- - # - # Glob for all header files associated with the object target: - # As this list is only for cosmetic reasons, so that associated header - # files show up in IDEs, we don't manage an explicit list (with the - # trade-off to have to run "make rebuild_cache" when a new header file - # emerges...) - # - FILE(GLOB _header - ${CMAKE_SOURCE_DIR}/include/deal.II/dofs/*.h - ) - - # - # A list of source files forming the object target: - # - SET(_src - ... - dof_tools.cc - ) - - # - # A list of instantiations that must be expanded: - # - SET(_inst - ... - dof_tools.inst.in - ) - - # - # The following macro will set up an obj_dofs.debug and - # obj_dofs.release target with appropriate compile flags and - # definitions for a simultaneous build of debug and release library. - # Furthermore, the object name will be stored in - # ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/deal_ii_objects_(debug/release) - # so that it is available in global scope. - # - # Header files and instatiation files (${_header}, ${_inst}) are added - # for cosmetic reasons, so that they show up in IDEs. - # - DEAL_II_ADD_LIBRARY(obj_dofs OBJECT ${_src} ${_header} ${_inst}) - - # - # This macro will set up an obj_dofs.inst target for expanding all - # files listed in ${inst_in_files}. Appropriate target dependencies - # will be added to obj_dofs.debug and obj_dofs.release. - # - EXPAND_INSTANTIATIONS(obj_dofs "${inst_in_files}") -- - -
- Later, all object targets are collected in
- ./source/CMakeLists.txt
to define the actual debug and
- releases libraries. For further details, see
- ./source/CMakelists.txt
and
- ./cmake/macros/macro_deal_ii_add_library.cmake
.
-
./cmake/config/CMakeLists.txt
- The final bits of configuration happens in
- ./cmake/config/CMakeLists.txt
where the templates for
- the project configuration deal.IIConfig.cmake
and the
- compatibility file Make.global_options
get expanded.
- Furthermore, the configuration for the template expansion mechanism
- resides under ./cmake/config/template_arguments.in
.
-