From e0d262214717a8c8c286f389175dbe58f8f554fc Mon Sep 17 00:00:00 2001 From: peterrum Date: Wed, 10 Mar 2021 13:29:57 +0100 Subject: [PATCH] Add .bib file --- 9.3/paper.bib | 1080 +++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 1080 insertions(+) create mode 100644 9.3/paper.bib diff --git a/9.3/paper.bib b/9.3/paper.bib new file mode 100644 index 0000000..cb2873f --- /dev/null +++ b/9.3/paper.bib @@ -0,0 +1,1080 @@ +%% do not edit this file, edit in the deal.II main repository, copy here, but +%% keep this note in here for the next one. + +%% The deal.II paper + +@Article{BangerthHartmannKanschat2007, + title = {deal.{II} --- a General Purpose Object Oriented Finite Element Library}, + author = {Bangerth, W. and Hartmann, R. and Kanschat, G.}, + journal = {{ACM} Trans. Math. Softw.}, + volume = {33}, + number = {4}, + year = {2007}, + doi = {10.1145/1268776.1268779} +} + +@Article{dealII2020design, + title = {The {deal.II} finite element library: {D}esign, features, and + insights}, + author = {Daniel Arndt and Wolfgang Bangerth and Denis Davydov and Timo + Heister and Luca Heltai and Martin Kronbichler and Matthias Maier + and Jean-Paul Pelteret and Bruno Turcksin and David Wells}, + journal = {Computers \& Mathematics with Applications}, + volume = {in press}, + year = {2020}, + DOI = {10.1016/j.camwa.2020.02.022}, +} + +@Misc{changes84, + Title = {List of Changes}, + Note = {\url{https://www.dealii.org/developer/doxygen/deal.II/changes_between_8_3_and_8_4.html}}, + Url = {https://www.dealii.org/developer/doxygen/deal.II/changes_between_8_3_and_8_4.html} +} + +@Misc{changes85, + Title = {List of Changes}, + Note = {\url{https://www.dealii.org/developer/doxygen/deal.II/changes_between_8_4_2_and_8_5_0.html}}, + Url = {https://www.dealii.org/developer/doxygen/deal.II/changes_between_8_4_2_and_8_5_0.html} +} + +@Misc{changes90, + key={List of Changes}, + Title = {List of Changes for 9.0}, + Note = {\url{https://www.dealii.org/developer/doxygen/deal.II/changes_between_8_5_and_9_0.html}}, + Url = {https://www.dealii.org/developer/doxygen/deal.II/changes_between_8_5_0_and_9_0.html} +} + +@Misc{changes91, + key={List of Changes}, + Title = {List of Changes for 9.1}, + Note = {\url{https://www.dealii.org/developer/doxygen/deal.II/changes_between_9_0_1_and_9_1_0.html}}, + Url = {https://www.dealii.org/developer/doxygen/deal.II/changes_between_9_0_1_and_9_1_0.html} +} + +@Misc{changes92, + key={List of Changes}, + Title = {List of Changes for 9.2}, + Note = {\url{https://www.dealii.org/developer/doxygen/deal.II/changes_between_9_1_1_and_9_2_0.html}}, + Url = {https://www.dealii.org/developer/doxygen/deal.II/changes_between_9_1_1_and_9_2_0.html} +} + +@article{dealII80, + title = {The \texttt{deal.II} Library, Version 8.0}, + author = {W. Bangerth and T. Heister and L. Heltai and G. Kanschat + and M. Kronbichler and M. Maier and B. Turcksin and T. D. Young}, + journal = {arXiv preprint \url{http://arxiv.org/abs/1312.2266v3}}, + year = {2013}, +} + +@article{dealII81, + title = {The \texttt{deal.II} Library, Version 8.1}, + author = {W. Bangerth and T. Heister and L. Heltai and G. Kanschat + and M. Kronbichler and M. Maier and B. Turcksin and T. D. Young}, + journal = {arXiv preprint \url{http://arxiv.org/abs/1312.2266v4}}, + year = {2013}, +} + +@article{dealII82, + title = {The \texttt{deal.II} Library, Version 8.2}, + author = {W. Bangerth and T. Heister and L. Heltai + and G. Kanschat and M. Kronbichler + and M. Maier and B. Turcksin + and T. D. Young}, + journal = {Archive of Numerical Software}, + volume = 3, + year = {2015}, +} + +@article{dealII83, + title = {The \texttt{deal.II} Library, Version 8.3}, + author = {W. Bangerth and T. Heister and L. Heltai + and G. Kanschat and M. Kronbichler + and M. Maier and B. Turcksin}, + journal = {Archive of Numerical Software}, + volume = {4}, + number = {100}, + year = {2016}, + pages = {1--11}, + issn = {2197-8263}, + doi = {10.11588/ans.2016.100.23122}, +} + + @article{dealII85, + title = {The \texttt{deal.II} Library, Version 8.5}, + author = {D. Arndt and W. Bangerth and D. Davydov and T. Heister and + L. Heltai and M. Kronbichler and M. Maier and J.-P. Pelteret + and B. Turcksin and D. Wells}, + journal = {Journal of Numerical Mathematics}, + year = {2017}, + volume = 25, + number = 3, + pages = {137--146}, + Doi = {10.1515/jnma-2016-1045} + } + +@article{dealII84, + title = {The \texttt{deal.II} Library, Version 8.4}, + author = {W. Bangerth and D. Davydov and T. Heister and + L. Heltai and G. Kanschat and M. Kronbichler and M. Maier + and B. Turcksin and D. Wells}, + journal = {Journal of Numerical Mathematics}, + year = {2016}, + volume = {24}, + number = {3}, + pages = {135--141}, + doi = {10.1515/jnma-2016-1045} + } + + + +@article{dealII90, +title = {The \texttt{deal.II} Library, Version 9.0}, +author = {G. Alzetta and D. Arndt and W. Bangerth and V. Boddu and + B. Brands and D. Davydov and R. Gassmoeller and T. Heister and + L. Heltai and K. Kormann and M. Kronbichler and M. Maier and + J.-P. Pelteret and B. Turcksin and D. Wells}, +journal = {J. Numer. Math.}, +volume = "26", +number = "4", +pages = "173--184", +year = 2018, +doi = "10.1515/jnma-2018-0054" +} + + +@article{dealII91, + doi = {10.1515/jnma-2019-0064}, + url = {https://doi.org/10.1515/jnma-2019-0064}, + year = {2019}, + month = dec, + publisher = {Walter de Gruyter {GmbH}}, + volume = {27}, + number = {4}, + pages = {203--213}, + author = {Daniel Arndt and Wolfgang Bangerth and Thomas C. Clevenger and Denis Davydov and Marc Fehling and Daniel Garcia-Sanchez and Graham Harper and Timo Heister and Luca Heltai and Martin Kronbichler and Ross Maguire Kynch and Matthias Maier and Jean-Paul Pelteret and Bruno Turcksin and David Wells}, + title = {The deal.{II} library, Version 9.1}, + journal = {Journal of Numerical Mathematics} +} + + +%% The deal.II web page and online reference. +%% Please cite specific versions only if you really need to + +@Manual{DealIIReference, + title = {{\tt deal.{I}{I}} Differential Equations Analysis Library, + Technical Reference}, + author = {W. Bangerth and T. Heister and G. Kanschat}, + note = {\texttt{http://www.dealii.org}}, + url = {http://www.dealii.org} +} + +@Manual{DealIIReference600, + title = {{\tt deal.{I}{I}} Differential Equations Analysis Library, + Technical Reference}, + author = {W. Bangerth and G. Kanschat}, + note = {\texttt{http://www.dealii.org}}, + url = {http://www.dealii.org/6.0.0}, + year = 2007 +} + +@Manual{DealIIReference610, + title = {{\tt deal.{I}{I}} Differential Equations Analysis Library, + Technical Reference}, + author = {W. Bangerth and G. Kanschat}, + note = {\texttt{http://www.dealii.org}}, + url = {http://www.dealii.org/6.1.0}, + year = 2008 +} + +@Manual{DealIIReference621, + title = {{\tt deal.{I}{I}} Differential Equations Analysis Library, + Technical Reference}, + author = {W. Bangerth and G. Kanschat}, + note = {\texttt{http://www.dealii.org}}, + url = {http://www.dealii.org/6.2.1}, + year = 2009 +} + +@Manual{DealIIReference631, + title = {{\tt deal.{I}{I}} Differential Equations Analysis Library, + Technical Reference}, + author = {W. Bangerth and G. Kanschat}, + note = {\texttt{http://www.dealii.org}}, + url = {http://www.dealii.org/6.3.1}, + year = 2010 +} + +@Manual{DealIIReference700, + title = {{\tt deal.{I}{I}} Differential Equations Analysis Library, + Technical Reference}, + author = {W. Bangerth and G. Kanschat}, + note = {\texttt{http://www.dealii.org}}, + url = {http://www.dealii.org/7.0.0}, + year = 2011 +} + +@Manual{DealIIReference710, + title = {{\tt deal.{I}{I}} Differential Equations Analysis Library, + Technical Reference}, + author = {W. Bangerth and G. Kanschat}, + note = {\texttt{http://www.dealii.org}}, + url = {http://www.dealii.org/7.1.0}, + year = 2011 +} + +%% Additional papers on deal.II and special aspects + +@TechReport{BangerthKanschat1999, + title = {Concepts for Object-Oriented Finite Element Software -- the \texttt{deal.II} library}, + address = {Heidelberg}, + author = {Bangerth, W. and Kanschat, G.}, + institution = {SFB~359}, + number = {1999-43}, + type = {Preprint}, + year = {1999}, + url = {http://www.dealii.org/developer/reports/deal-paper.pdf} +} + + +@article{SartoriGiulianiBardelloni-2018-a, + Author = {Sartori, Alberto and Giuliani, Nicola and Bardelloni, Mauro and Heltai, Luca}, + Journal = {SoftwareX}, + Pages = {318--327}, + Title = {{deal2lkit: A toolkit library for high performance programming in deal.II}}, + Volume = {7}, + Year = {2018}} + + +@Article{BangerthKayserHerold2007, + author = {W. Bangerth and O. Kayser-Herold}, + title = {Data Structures and Requirements for $hp$ Finite Element + Software}, + journal = {ACM Trans. Math. Softw.}, + year = 2009, + volume = 36, + number = 1, + pages = {4/1--4/31} +} + +@Article{JanssenKanschat2011, + author = {Janssen, B. and Kanschat, G.}, + title = {Adaptive multilevel methods with local smoothing for + {${H}^1$}- and {$H^{\text{curl}}$}-conforming high order + finite element methods}, + journal = {SIAM J. Sci. Comput.}, + year = 2011, + volume = 33, + number = 4, + pages = {2095--2114}, + doi = {10.1137/090778523} +} + +@Article{Kanschat2004, + title = {Multi-level methods for discontinuous {G}alerkin {FEM} on locally refined meshes}, + author = {Kanschat, G.}, + journal = {Comput. \& Struct.}, + number = {28}, + pages = {2437--2445}, + volume = {82}, + year = {2004}, + doi = {10.1016/j.compstruc.2004.04.015} +} + +@Article{BangerthBursteddeHeisterKronbichler11, + author = {W. Bangerth and C. Burstedde and T. Heister + and M. Kronbichler}, + title = {Algorithms and data structures for massively parallel generic + adaptive finite element codes}, + journal = {ACM Trans. Math. Softw.}, + year = 2011, + volume = 38, + pages = {14/1--28}} + + +@Article{KronbichlerKormann2012, + author = {M. Kronbichler and K. Kormann}, + title = {A generic interface for parallel cell-based finite element operator application}, + journal = {Comput. Fluids}, + year = 2012, + volume = 63, + pages = {135--147}} + +@Article{KronbichlerWall2018, + author = {Kronbichler, M. and Wall, W. A.}, + title = {A performance comparison of continuous and discontinuous {G}alerkin + methods with fast multigrid solvers}, + journal = {SIAM J. Sci. Comput.}, + pages = {A3423--A3448}, + volume = 40, + number = 5, + year = 2018, + doi = {10.1137/16M110455X}} + +@Article{KronbichlerKormann2019, + author = {M. Kronbichler and K. Kormann}, + title = {Fast matrix-free evaluation of discontinuous {G}alerkin finite element operators}, + journal = {ACM Trans. Math. Soft.}, + volume = 45, + number = 3, + pages = {29:1--29:40}, + year = 2019, + doi = {10.1145/3325864}} + +@Article{KronbichlerLjungkvist2019, + author = {Kronbichler, M. and Ljungkvist, K.}, + title = {Multigrid for Matrix-Free High-Order Finite Element Computations on Graphics Processors}, + journal = {ACM Trans. Parallel Comput.}, + volume = {6}, + number = {1}, + pages = {2/1--32}, + year = 2019} + +@inproceedings{Arndt2020sppexa, +author = {Daniel Arndt and Niklas Fehn and Guido Kanschat and Katharina Kormann and Martin Kronbichler and Peter Munch and Wolfgang A. Wall and Julius Witte}, +title = {{ExaDG} -- High-Order Discontinuous {G}alerkin for the Exa-Scale}, +booktitle="Software for Exascale Computing -- SPPEXA 2016--2019", +series={Lecture Notes in Computational Science and Engineering 136}, +year="2020", +publisher="Springer International Publishing", +address="Cham", +editor="Bungartz, Hans-Joachim +and Nagel, Wolfgang E. +and Reiz, Severin +and Uekermann, Benjamin +and Neumann, Philipp", +doi = {10.1007/978-3-030-47956-5_8} +} + + +@techreport{DeSimoneHeltaiManigrasso2009, + Author = {A. DeSimone and L. Heltai and C. Manigrasso}, + Institution = {SISSA}, + Number = {42/2009/M}, + Title = {Tools for the Solution of {PDEs} Defined on Curved Manifolds with deal.{II}}, + Year = {2009}} + +@techreport{HeltaiMola2015, + Author = {L. Heltai and A. Mola}, + Institution = {SISSA}, + Title = {{Towards the Integration of CAD and FEM using open source libraries: a +Collection of deal.II Manifold Wrappers for the OpenCASCADE Library}}, + Year = 2015, + Note = {Submitted}} + +@techreport{HeltaiBangerthKronbichlerMola2019, + author = {Heltai, L. and Bangerth, W. and Kronbichler, M. and Mola, A.}, + title = {Using exact geometry information in finite element computations}, + institution = {arXiv:1910.09824}, + year = 2019} +} + +@article{trilinos64, + author = {C. Jhurani and + T. M. Austin and + M. A. Heroux and + J. M. Willenbring}, + title = {Supporting 64-bit global indices in {E}petra and other {T}rilinos + packages -- {T}echniques used and lessons learned}, + journal = {arXiv}, + volume = {1307.6638}, + year = {2013}, + ee = {http://arxiv.org/abs/1307.6638}, + bibsource = {DBLP, http://dblp.uni-trier.de} +} + + +@Article{BH13, + author = {Wolfgang Bangerth and Timo Heister}, + title = {What makes computational open source software libraries successful?}, + journal = {Computational Science \& Discovery}, + year = 2013, + volume = 6, + pages = {015010/1--18}} + + +@Article{FHB13, + author = {J. Frohne and T. Heister and W. Bangerth}, + title = {Efficient numerical methods for the large-scale, parallel + solution of elastoplastic contact problems}, + journal = {submitted}, + year = 2013} + +@Article{TKB16, + author = {B. Turcksin and M. Kronbichler and W. Bangerth}, + title = {\textit{WorkStream} -- a design pattern for multicore-enabled finite element computations}, + journal = {ACM Transactions on Mathematical Software}, + year = 2016, + volume = 43, + number = 1, + pages = {2/1--2/29} +} + +@Misc{cpp11, + key = {C++11}, + author = {International Standards Organization}, + title = {{ISO/IEC} 14882:2011: The {C}++11 Programming Language Standard}, + howpublished = {\url{http://www.iso.org/iso/iso_catalogue/catalogue_tc/catalogue_detail.htm?csnumber=50372}}, + year = 2011} + +@Article{trilinos, + author = {M. A. Heroux and R. A. Bartlett and V. E. Howle and R. J. Hoekstra and J. J. Hu + and T. G. Kolda and R. B. Lehoucq and K. R. Long and R. P. Pawlowski and + E. T. Phipps and A. G. Salinger and H. K. Thornquist and R. S. Tuminaro and + J. M. Willenbring and A. Williams and K. S. Stanley}, + title = {An overview of the {T}rilinos project}, + journal = {ACM Trans. Math. Softw.}, + year = 2005, + volume = 31, + pages = {397--423}} + +@Misc{trilinos-web-page, + Author = "M. A. Heroux and others", + Title = "{Trilinos} web page", + Note = "\url{http://trilinos.org}", + Year = "2018"} + +# From http://www.mcs.anl.gov/petsc/documentation/referencing.html +@Misc{petsc-web-page, + author = {S. Balay and S. Abhyankar and M.~F. Adams and J. Brown and P. Brune + and K. Buschelman and L. Dalcin and V. Eijkhout and W.~D. Gropp + and D. Karpeyev and D. Kaushik and M.~G. Knepley + and D. May and L. Curfman McInnes and R. Mills and T. Munson + and K. Rupp and P. Sanan B.~F. Smith and S. Zampini + and H. Zhang and H. Zhang}, + title = {{PETS}c {W}eb page}, + url = {http://www.mcs.anl.gov/petsc}, + howpublished = {\url{http://www.mcs.anl.gov/petsc}}, + year = {2018} + } + +@TechReport{petsc-user-ref, + author = {S. Balay and S. Abhyankar and M.~F. Adams and J. Brown and P. Brune + and K. Buschelman and L. Dalcin and V. Eijkhout and W.~D. Gropp + and D. Karpeyev and D. Kaushik and M.~G. Knepley + and D. May and L. Curfman McInnes and R. Mills and T. Munson + and K. Rupp and P. Sanan B.~F. Smith and S. Zampini + and H. Zhang and H. Zhang}, + title = {{PETS}c Users Manual}, + institution = {Argonne National Laboratory}, + year = 2018, + number = {ANL-95/11 - Revision 3.9}, + url = {http://www.mcs.anl.gov/petsc} + } + + +@Article{umfpack, + author = {T. A. Davis}, + title = {Algorithm 832: {UMFPACK V4.3}---an unsymmetric-pattern multifrontal method}, + journal = {ACM Trans. Math. Softw.}, + year = 2004, + volume = 30, + pages = {196--199}} + +@Book{Rei07, + author = {J. Reinders}, + title = {Intel Threading Building Blocks}, + publisher = {O'Reilly}, + year = 2007} + +@Article{p4est, + author = {C. Burstedde and L. C. Wilcox and O. Ghattas}, + title = {\texttt{p4est}: {S}calable algorithms for parallel + adaptive mesh refinement on forests of octrees}, + journal = {SIAM J. Sci. Comput.}, + volume = 33, + number = 3, + pages = {1103-1133}, + year = 2011} + +@Article{Burstedde2018, + author = {C. Burstedde}, + title = {Parallel tree algorithms for {AMR} and non-standard data access}, + journal = {arXiv e-prints}, + keywords = {Computer Science - Distributed, Parallel, and Cluster Computing, 65D18, 65M50, 65Y05, 68W10}, + year = 2018, + month = {Mar}, + eid = {arXiv:1803.08432}, + pages = {arXiv:1803.08432}, + archivePrefix = {arXiv}, + eprint = {1803.08432}, + primaryClass = {cs.DC}, + adsurl = {https://ui.adsabs.harvard.edu/abs/2018arXiv180308432B}, + adsnote = {Provided by the SAO/NASA Astrophysics Data System} +} + +@Book{arpack, + author = {R. B. Lehoucq and D. C. Sorensen and C. Yang}, + title = {{ARPACK} users' guide: solution of large-scale eigenvalue problems with implicitly restarted Arnoldi methods}, + publisher = {SIAM, Philadelphia}, + year = 1998} + +@Misc{mumps-web-page, + key = {MUMPS}, + title = {{MUMPS: a MUltifrontal Massively Parallel sparse direct Solver}}, + note = {\url{http://graal.ens-lyon.fr/MUMPS/}}} + + +@Article{ADE00, + author = {P.R. Amestoy and I.S. Duff and J.-Y. L'Excellent}, + title = {Multifrontal parallel distributed symmetric and unsymmetric solvers}, + journal = {Comput. Methods in Appl. Mech. Eng.}, + year = 2000, + volume = 184, + pages = {501--520}} + + +@article{MUMPS:1, + author = {P. R. Amestoy and I. S. Duff and J. Koster and J.-Y. L'Excellent}, + title = {A Fully Asynchronous Multifrontal Solver Using Distributed Dynamic Scheduling}, + journal = {SIAM Journal on Matrix Analysis and Applications}, + volume = {23}, + number = {1}, + year = {2001}, + pages = {15-41} + } + + +@article{MUMPS:2, + author = {P. R. Amestoy and A. Guermouche and J.-Y. L'Excellent and S. Pralet}, + title = {Hybrid scheduling for the parallel solution of linear systems}, + journal = {Parallel Computing}, + volume = {32}, + number = {2}, + year = {2006}, + pages = {136-156} +} + +@Misc{ginkgo-web-page, + key = {ginkgo}, + title = {Ginkgo: high-performance linear algebra library for manycore + systems}, + note ={\url{https://github.com/ginkgo-project/ginkgo}} +} + +@Misc{opencascade-web-page, + key = {OpenCASCADE}, + title = {{OpenCASCADE: Open CASCADE Technology, 3D modeling \& numerical simulation}}, + note = {\url{http://www.opencascade.org/}}} + + +@Misc{muparser-web-page, + key = {muparse}, + title = {{muparser: Fast Math Parser Library}}, + note = {\url{http://muparser.beltoforion.de/}}} + +@Misc{symengine-web-page, + key = {symengine}, + title = {{SymEngine: fast symbolic manipulation library, written in C++}}, + note = {\url{https://github.com/symengine/symengine}, \url{http://sympy.org/}}} + +@Misc{hdf5, + author = {{The HDF Group}}, + title = "{Hierarchical Data Format, version 5}", + year = {1997-2018}, + note = {\url{http://www.hdfgroup.org/HDF5/}} +} + +@article{karypis1998fast, + title={A fast and high quality multilevel scheme for partitioning irregular graphs}, + author={Karypis, G. and Kumar, V.}, + journal={SIAM J. Sci. Comput.}, + volume={20}, + number={1}, + pages={359--392}, + year={1998}, + publisher={SIAM} +} +@article{rew1990netcdf, + title={{NetCDF}: an interface for scientific data access}, + author={Rew, R. and Davis, G.}, + journal={Computer Graphics and Applications, IEEE}, + volume={10}, + number={4}, + pages={76--82}, + year={1990}, + publisher={IEEE} +} +@Article{Hernandez:2005:SSF, + author = "V. Hernandez and J. E. Roman and V. Vidal", + title = "{SLEPc}: A Scalable and Flexible Toolkit for the Solution of Eigenvalue + Problems", + journal = "{ACM} Trans. Math. Software", + volume = "31", + number = "3", + pages = "351--362", + year = "2005" +} + +@article{Lachat1976, +author = {Lachat, J. C. and Watson, J. 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